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1.
BMC Oral Health ; 24(1): 459, 2024 Apr 16.
Article in English | MEDLINE | ID: mdl-38627729

ABSTRACT

BACKGROUND: Dental caries in young children is a difficult global oral health problem. In the last decade, China has put a great deal of effort into reducing the prevalence of dental caries. This study, which is part of the China Population Chronic Disease and Nutrition Surveillance 2021, aimed to investigate the prevalence of dental caries among children aged 5 in Shanghai, China, and its associated factors. METHODS: A total of 1281 children aged 5 years from 6 districts in Shanghai were selected by a stratified sampling method. The survey consisted of an oral health questionnaire and an oral health examination. The questionnaire included questions on oral health knowledge, attitudes, and behaviours. The oral health examination used WHO standards. After screening, the data were input and analysed. Chi-square tests and logistic regression analyses were used to study the relevant factors affecting dental caries. RESULTS: The prevalence of dental caries among 1281 children was 51.0%, the dmft index score was 2.46, the Significant Caries Index (SiC) score was 6.39, and the SiC10 score was 10.35. Dental caries experience was related to the frequency of sweet drink consumption, the age of starting tooth brushing, eating habits after brushing, whether the children had received an oral examination provided by the government (p < 0.05), and the mother's education level but was not related to sex, the use of fluoride toothpaste, the frequency of brushing, whether the parents assisted brushing, or the frequency of flossing (p > 0.05). Logistic regression analysis showed that the region of residence, eating after brushing and the age of starting brushing were associated with dental caries. CONCLUSIONS: Dental caries remained prevalent among 5-year-old children in Shanghai, China. Prevention strategies that target the associated factors including region of residence, eating after brushing, and the age of starting brushing should be considered.


Subject(s)
Dental Caries , Humans , Child, Preschool , Dental Caries/epidemiology , Dental Caries/prevention & control , China/epidemiology , DMF Index , Cross-Sectional Studies , Oral Health , Prevalence
2.
Ann Hum Biol ; 50(1): 42-47, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36636013

ABSTRACT

BACKGROUND: Insertion/deletion polymorphism (InDel), as the third genetic marker, has been given a lot of attention by forensic geneticists since it has the advantages of extensive distributions in the human genome, small amplicon, and low mutation rate. However, the extant InDel panels were only viewed as supplemental tools for kinship analyses. In addition, these panels were not conductive to mixture deconvolution because InDels in these panels mainly displayed two alleles. AIMS: The purpose of this study is to investigate genetic distributions of a novel panel of InDels and STRs in the Guizhou Han population; assess the forensic application value of the panel; and conduct population genetic analyses of the Guizhou Han and other reference populations based on the overlapping loci. SUBJECTS AND METHODS: The bloodstain samples of 209 Guizhou Han were gathered and genotyped by the novel panel. Allelic frequencies and forensic parameters of two miniSTRs and 59 InDels in the panel were estimated. In addition, we assessed phylogenetic relationships among the Guizhou Han and other reference populations by principal component analysis, DA genetic distance, and neighbor-joining tree. RESULTS: A total of 139 alleles of 61 loci could be observed in the Guizhou Han population. Polymorphic information content values of 59 InDels were greater than 0.3 in the Guizhou Han population. The cumulative power of discrimination and probability of exclusion of two miniSTRs and 59 InDels in the Guizhou Han population were 0.999999999999999999999999997984 and 0.9999986, respectively. Principal component analysis of 14 populations showed that the Guizhou Han population located closer to Hunan Han and Southern Han Chinese (CHS) populations. Similar results were also discerned from DA genetic distances and the neighbor-joining tree. CONCLUSION: To sum up, the novel panel could be employed for forensic personal identification and paternity testing in the Guizhou Han population as a promising independent tool. Besides, the principal component analysis and phylogenetic tree of the Guizhou Han and other compared populations revealed that the Guizhou Han population possesses close genetic affinities with Hunan Han, CHS, and Han Chinese in Beijing (CHB) populations.


Subject(s)
Ethnicity , Polymorphism, Genetic , Humans , Phylogeny , Ethnicity/genetics , Gene Frequency , Genetics, Population , Forensic Genetics/methods , INDEL Mutation , China , Microsatellite Repeats
3.
Aging (Albany NY) ; 15(12): 5873-5886, 2023 06 26.
Article in English | MEDLINE | ID: mdl-37390335

ABSTRACT

Non-small cell lung cancer (NSCLC), representing about 85% of all lung cancer (LC) cases, is by far the most common form of LC. High-throughput technology largely expands our ability to analyze the transcriptome data and a plethora of cancer-driving genes has been identified, paving the path to immune therapy, where the effects of cancer-causing mutations are countered with microenvironment complexity. Given that competing endogenous RNAs (ceRNAs) participate in diverse cellular processes by a broad array of mechanisms in cancer, we scrutinized the immune microenvironment and ceRNA signatures in mutation-specific NSCLC by integrating TCGA-NSCLC and NSCLS-associated GEO datasets. The results suggested that RASA1mutation clusters in LUSC had a better prognosis and immunity. Immune cell infiltration analysis indicated that the cluster with RASA1 mutation had a significantly high level of NK T cells and a low level of memory effector T cells. Further analysis of immune-related ceRNAs in LUSC showed that hsa-miR-23a was significantly associated with survival in RASA1-mutation samples, indicating that there may be specific ceRNAs in mutation-specific subgroups in NSCLC. In conclusion, this study verified the presence of complexity and diversity of NSCLC gene mutations and highlighted the intricate links between gene mutation and tumor environment features.


Subject(s)
Carcinoma, Non-Small-Cell Lung , Lung Neoplasms , Humans , Carcinoma, Non-Small-Cell Lung/genetics , Lung Neoplasms/genetics , Mutation , Prognosis , Oncogenes , GTPase-Activating Proteins , Tumor Microenvironment/genetics , p120 GTPase Activating Protein
4.
PeerJ ; 11: e14964, 2023.
Article in English | MEDLINE | ID: mdl-36915656

ABSTRACT

Background: The insertion/deletion polymorphism (InDel), an ideal forensic genetic marker with a low spontaneous mutation rate and small amplification product fragments, is widely distributed in the genome, combining the advantages of STR and SNP genetic markers. The X-chromosome has high application value in complex paternity testing, and it is an excellent system for evaluating population admixture and studying evolutionary anthropology. However, further research is needed on the population genetics of X-chromosome InDels (X-InDels). Methods: In this article, a system composed of 38 X-InDel loci was utilized to analyse and evaluate the forensic parameters of the Guizhou Han population in order to explore its forensic application efficiency. Results: The results showed that expected heterozygosities spanned from 0.0189 to 0.5715, and the cumulative power of discrimination of the 32 X-InDels and three linkage blocks was 0.9999999954 and 0.999999999999741 for males and females, respectively. The combined mean exclusion chance of these loci for trios and duos is 0.999999 and 0.999747, respectively. Multiple methods like principal component analysis, Fst genetic distance, and phylogenetic reconstruction were employed for dissecting the genetic structure of the Guizhou Han population by comparing it with previously reported populations. As expected, the studied Han population displayed relatively close genetic affinities with the East Asian populations. At the same time, there were obvious genetic differentiations between the Guizhou Han population and other continental populations that were discerned, especially for the African populations. Conclusions: This study further verified the applicability of 38 X-InDels for human personal identification and kinship analyses of Han Chinese, and also showed the application potential of X-InDels in population genetics.


Subject(s)
Genetics, Population , Polymorphism, Genetic , Male , Female , Humans , Gene Frequency , Phylogeny , Polymorphism, Genetic/genetics , China
5.
Am J Transl Res ; 13(3): 1411-1421, 2021.
Article in English | MEDLINE | ID: mdl-33841666

ABSTRACT

Nampt consists of iNampt and eNampt, might contribute to modulating obesity-related malignancies and impairing response to chemotherapy in a range of cancers. This study explored the role of Nampt and adiposity in the progression and response to neo-adjuvant chemotherapy of esophageal squamous cell carcinoma (ESCC). Patients with ESCC were treated with 2 cycles of neo-adjuvant chemotherapy, then evaluated for surgery. Tumor regression grading (TRG) and prognosis of these patients were collected. Anthropometry was well utilized. Serum eNampt was determined by enzyme-linked immunosorbent assay, iNampt expression in tissues were assessed by PCR, western blot and immunohistochemistry. eNampt in sera elevated significantly in these over-weight or obese patients, and was positively associated with body mass index (BMI), waist circumference, visceral fat area (VFA), subcutaneous fat area (SFA) and total fat area (TFA) (P<0.05). iNampt expression in the mRNA and protein levels were up-regulated in ESCC compared to their adjacent non-tumor specimens (P<0.05). iNampt protein staining revealed mainly in the cytoplasm and nuclei, while it was not related to serum eNampt, BMI, waist circumference, VFA, SFA and TFA (P>0.05). Pre-treatment iNampt, BMI, SFA, TFA and age significantly correlated with neo-adjuvant chemotherapy response, and iNampt expression and age were independent predictors (P<0.05). Pre-treatment iNampt, ypT, ypN, ypTNM stage and TRG were associated with the survival of ESCCs, and ypN stage and TRG were independent prognostic factors (P<0.05). In conclusion, iNampt impaired ESCC response to neo-adjuvant chemotherapy independent of eNampt, targeting iNampt to increase ESCC response to neo-adjuvant chemotherapy would improve the prognosis of ESCCs.

6.
Oncotarget ; 8(33): 54518-54527, 2017 Aug 15.
Article in English | MEDLINE | ID: mdl-28903360

ABSTRACT

BACKGROUND: Coronary artery disease (CAD) is one of the most serious diseases all around the world. Previous studies have shown the function of CXCL12 in the process of atherosclerosis. The aim of this research is to examine whether variants of CXCL12 contribute to CAD. MATERIALS AND METHODS: To examine whether variants of CXCL12 contribute to CAD, we selected 6 single nucleotide polymorphisms (SNPs) of CXCL12, and genotyped by Sequenom MassARRAY technology in 597 CAD patients and 685 healthy control. Odds ratio (OR) and 95% confidence intervals (CIs) were calculated by unconditional logistic regression adjusted for age and gender. We also analysis the differences in continuous variables among the subjects with three genotypes of related genes were assessed using the ANOVA. RESULTS: We found significant differences in apoB concentrations with rs1065297 and rs10793538 different genotype. In the allele model, rs1065297, rs266089 and rs10793538 in CXCL12 gene associated with the risk of CAD. Stratified according to gender, rs266089 and rs2839693 in CXCL12 gene were associated with the risk of CAD in men, while rs1065297 and rs10793538 in CXCL12 gene were associated with the risk of CAD in women. Stratified according to age, rs197452 decreased the risk of CAD in less than 50 years old group. While in more than 50 years old group, not find significant results. Haplotype analysis shown that haplotype "TGCC" in the block increased CAD risk (OR=1.26, 95%CI: 1.00-1.58, p=0.046). CONCLUSION: This study provides an evidence for polymorphism of CXCL12 gene associated with CAD development in Chinese Han population.

7.
Oncotarget ; 7(40): 66100-66108, 2016 Oct 04.
Article in English | MEDLINE | ID: mdl-27623071

ABSTRACT

Susceptibility to tuberculosis (TB) is partially dependent on host genetic variability. SP110 and PMP22 are candidate genes identified in this study as associated with human susceptibility to TB. Here we performed an association analysis in a case-control study of a Tibetan population (217 cases and 383 controls). Using bioinformatics methods, we identified two SNPs in SP110 that may decrease susceptibility to TB (rs4327230, p<0.001, OR: 0.37, 95%CI: 0.25-0.55; rs2114591, p<0.001, OR: 0.59, 95%CI: 0.45-0.78), whereas one SNP in PMP22 appeared to increase TB risk (rs13422, p=0.003, OR: 1.45, 95%CI: 1.14-1.84). SNPs rs4327230 and rs2114591 remained significant after Bonferroni correction (p<0.00178). We found that the "GC" haplotype in SP110 was protective against TB, with a 64% reduction in disease risk. "CA" and "CG" in PMP22 were also associated with a protective effect. Our study indicates there is an association between specific gene polymorphisms and TB risk in a Tibetan population, and may help to identify those TB-affected individuals most susceptible to disease.


Subject(s)
Asian People/genetics , Minor Histocompatibility Antigens/genetics , Myelin Proteins/genetics , Nuclear Proteins/genetics , Polymorphism, Single Nucleotide , Tuberculosis/diagnosis , Adult , Biomarkers, Tumor/genetics , Case-Control Studies , China/epidemiology , Female , Follow-Up Studies , Genetic Association Studies , Genetic Predisposition to Disease , Genotype , Humans , Male , Mycobacterium tuberculosis/isolation & purification , Prognosis , Risk Factors , Tibet/epidemiology , Tuberculosis/epidemiology , Tuberculosis/etiology , Young Adult
8.
Oncotarget ; 7(52): 87473-87478, 2016 Dec 27.
Article in English | MEDLINE | ID: mdl-27974682

ABSTRACT

Single nucleotide polymorphisms (SNPs) in the telomere-associated gene ACYP2 are associated with increased lung cancer risk. We explored the correlation between ACYP2 SNPs and lung cancer susceptibility in the Chinese Han population. A total of 554 lung cancer patients and 603 healthy controls were included in this study. Thirteen SNPs in ACYP2 were selected. Odds ratios (ORs) and 95% confidence intervals (95% CIs) were calculated using unconditional logistic regression analysis. Multivariate logistic regression analysis was used assess the correlation between SNPs and lung cancer. We found that rs1682111 was associated with increased lung cancer risk in the recessive model (crude, OR=1.50, 95%CI: 1.04-2.16, p=0.029; adjusted for age, OR=1.55, 95%CI: 1.04-2.30, p=0.029), as was rs11896604 in the codominant model (crude, OR=0.65, 95%CI: 0.33-1.28, p=0.045; adjusted for age, OR=0.74, 95%CI: 0.36-1.53, p=0.049) and over-dominant model (crude, OR=1.30, 95%CI: 1.02-1.66, p=0.032; adjusted for age, OR=1.37, 95%CI: 1.05-1.78, p=0.020). Finally, rs843720 was associated with increased lung cancer risk in the recessive model (crude, OR=1.43, 95%CI: 1.02-2.02, p=0.040; adjusted for age, OR=1.48, 95%CI: 1.02-2.15, p=0.040). Thus three SNPs in ACYP2 (rs1682111, rs11896604 and rs843720) associate with lung cancer in the Chinese Han population.


Subject(s)
Acid Anhydride Hydrolases/genetics , Genetic Predisposition to Disease , Lung Neoplasms/genetics , Polymorphism, Single Nucleotide , Adult , Aged , Asian People/genetics , Female , Humans , Logistic Models , Lung Neoplasms/etiology , Male , Middle Aged , Risk
9.
Thorac Cancer ; 6(2): 220-3, 2015 Mar.
Article in English | MEDLINE | ID: mdl-26273362

ABSTRACT

Polymorphous low-grade adenocarcinoma (PLGA) is a low-grade malignant infiltrative tumor of the minor salivary glands. According to data from PubMed (National Center for Biotechnology), one case of PLGA involving the left main bronchus and one case involving the right main and upper lobar bronchi have previously been reported. Here, we describe the first case of PLGA originating in the trachea with metastasis to the right middle lobe bronchus, all initially misdiagnosed as adenoid cystic carcinoma (ACC). It is particularly important to distinguish this tumor from other types of salivary gland tumors, especially ACC. Complete surgical excision is the curative treatment of choice for PLGA.

10.
Huan Jing Ke Xue ; 23(6): 79-85, 2002 Nov.
Article in Zh | MEDLINE | ID: mdl-12619283

ABSTRACT

The contents of nitrogen, phosphorus and plankton in aquatic areas and non-sea-farming areas, which were found in Shantou, Huiyang, Zhuhai, Yangjiang and Zhanjiang in Guangdong Province respectively, were measured in 2000 in the summer with the aim of estimating the environmental problem of marine culture. The concentration of total nitrogen(TN), particle total nitrogen(PTN), total phosphorus(TP), particle total phosphorus(PTP) in aquatic areas, which were 0.506-1.244 mumol/L, 0.367-1.066 mumol/L, 0.112-0.232 mumol/L and 0.054-0.157 mumol/L respectively, were higher than non-sea-farming areas, but marine culture had no effect on the concentration of dissolvable total nitrogen(DTN) and dissolvable total phosphorus(DTP), TN:TP ratios and DTN:DTP ratios. The most phytoplankton in both aquatic areas and non-sea-farming areas was Chaetoceros, and that of zooplankton was Copepoda (including adult and larva). Marine culture affected the diversity of plankton and the population densities of some species, but not to the number of plankton kinds and the total individuals of all phytoplankton or all zooplankton.


Subject(s)
Aquaculture , Plankton/growth & development , Seawater/analysis , Animals , Nitrogen/analysis , Phosphorus/analysis
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