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1.
J Biomed Inform ; 125: 103972, 2022 01.
Article in English | MEDLINE | ID: mdl-34920125

ABSTRACT

Wound prognostic models not only provide an estimate of wound healing time to motivate patients to follow up their treatments but also can help clinicians to decide whether to use a standard care or adjuvant therapies and to assist them with designing clinical trials. However, collecting prognosis factors from Electronic Medical Records (EMR) of patients is challenging due to privacy, sensitivity, and confidentiality. In this study, we developed time series medical generative adversarial networks (GANs) to generate synthetic wound prognosis factors using very limited information collected during routine care in a specialized wound care facility. The generated prognosis variables are used in developing a predictive model for chronic wound healing trajectory. Our novel medical GAN can produce both continuous and categorical features from EMR. Moreover, we applied temporal information to our model by considering data collected from the weekly follow-ups of patients. Conditional training strategies were utilized to enhance training and generate classified data in terms of healing or non-healing. The ability of the proposed model to generate realistic EMR data was evaluated by TSTR (test on the synthetic, train on the real), discriminative accuracy, and visualization. We utilized samples generated by our proposed GAN in training a prognosis model to demonstrate its real-life application. Using the generated samples in training predictive models improved the classification accuracy by 6.66-10.01% compared to the previous EMR-GAN. Additionally, the suggested prognosis classifier has achieved the area under the curve (AUC) of 0.875, 0.810, and 0.647 when training the network using data from the first three visits, first two visits, and first visit, respectively. These results indicate a significant improvement in wound healing prediction compared to the previous prognosis models.


Subject(s)
Confidentiality , Electronic Health Records , Humans , Privacy , Prognosis , Time Factors
2.
BMC Neurosci ; 22(1): 47, 2021 08 02.
Article in English | MEDLINE | ID: mdl-34340655

ABSTRACT

INTRODUCTION: Stroke is one of the leading causes of substantial disability worldwide. Previous studies have shown brain functional and structural alterations in adults with stroke. However, few studies have examined the longitudinal reorganization in whole-brain structural networks in stroke. METHODS: Here, we applied graph theoretical analysis to investigate the longitudinal topological organization of white matter networks in 20 ischemic stroke patients with a one-month interval between two timepoints. Two sets of clinical scores, Fugl-Meyer motor assessment (FMA) and neurological deficit scores (NDS), were assessed for all patients on the day the image data were collected. RESULTS: The stroke patients exhibited significant increases in FMA scores and significant reductions in DNS between the two timepoints. All groups exhibited small-world organization (σ > 1) in the brain structural network, including a high clustering coefficient (γ > 1) and a low normalized characteristic path length (λ ≈ 1). However, compared to healthy controls, stroke patients showed significant decrease in nodal characteristics at the first timepoint, primarily in the right supplementary motor area, right middle temporal gyrus, right inferior parietal lobe, right postcentral gyrus and left posterior cingulate gyrus. Longitudinal results demonstrated that altered nodal characteristics were partially restored one month later. Additionally, significant correlations between the nodal characteristics of the right supplementary motor area and the clinical scale scores (FMA and NDS) were observed in stroke patients. Similar behavioral-neuroimaging correlations were found in the right inferior parietal lobe. CONCLUSION: Altered topological properties may be an effect of stroke, which can be modulated during recovery. The longitudinal results and the neuroimaging-behavioral relationship may provide information for understanding brain recovery from stroke. Future studies should detect whether observed changes in structural topological properties can predict the recovery of daily cognitive function in stroke.


Subject(s)
Brain Ischemia/diagnostic imaging , Brain/diagnostic imaging , Cognition , Ischemic Stroke/diagnostic imaging , Nerve Net/diagnostic imaging , Recovery of Function , Adult , Aged , Aged, 80 and over , Brain/physiology , Brain Ischemia/physiopathology , Cognition/physiology , Female , Humans , Ischemic Stroke/physiopathology , Longitudinal Studies , Male , Middle Aged , Nerve Net/physiology , Nomograms , Recovery of Function/physiology
3.
Optik (Stuttg) ; 127(15): 5783-5791, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27667860

ABSTRACT

Optical Coherence Tomography (OCT) is an emerging technique in the field of biomedical imaging, with applications in ophthalmology, dermatology, coronary imaging etc. OCT images usually suffer from a granular pattern, called speckle noise, which restricts the process of interpretation. Therefore the need for speckle noise reduction techniques is of high importance. To the best of our knowledge, use of Independent Component Analysis (ICA) techniques has never been explored for speckle reduction of OCT images. Here, a comparative study of several ICA techniques (InfoMax, JADE, FastICA and SOBI) is provided for noise reduction of retinal OCT images. Having multiple B-scans of the same location, the eye movements are compensated using a rigid registration technique. Then, different ICA techniques are applied to the aggregated set of B-scans for extracting the noise-free image. Signal-to-Noise-Ratio (SNR), Contrast-to-Noise-Ratio (CNR) and Equivalent-Number-of-Looks (ENL), as well as analysis on the computational complexity of the methods, are considered as metrics for comparison. The results show that use of ICA can be beneficial, especially in case of having fewer number of B-scans.

4.
Sci Rep ; 14(1): 7043, 2024 03 25.
Article in English | MEDLINE | ID: mdl-38528003

ABSTRACT

The global burden of acute and chronic wounds presents a compelling case for enhancing wound classification methods, a vital step in diagnosing and determining optimal treatments. Recognizing this need, we introduce an innovative multi-modal network based on a deep convolutional neural network for categorizing wounds into four categories: diabetic, pressure, surgical, and venous ulcers. Our multi-modal network uses wound images and their corresponding body locations for more precise classification. A unique aspect of our methodology is incorporating a body map system that facilitates accurate wound location tagging, improving upon traditional wound image classification techniques. A distinctive feature of our approach is the integration of models such as VGG16, ResNet152, and EfficientNet within a novel architecture. This architecture includes elements like spatial and channel-wise Squeeze-and-Excitation modules, Axial Attention, and an Adaptive Gated Multi-Layer Perceptron, providing a robust foundation for classification. Our multi-modal network was trained and evaluated on two distinct datasets comprising relevant images and corresponding location information. Notably, our proposed network outperformed traditional methods, reaching an accuracy range of 74.79-100% for Region of Interest (ROI) without location classifications, 73.98-100% for ROI with location classifications, and 78.10-100% for whole image classifications. This marks a significant enhancement over previously reported performance metrics in the literature. Our results indicate the potential of our multi-modal network as an effective decision-support tool for wound image classification, paving the way for its application in various clinical contexts.


Subject(s)
Accidental Injuries , Deep Learning , Neoplasms, Squamous Cell , Humans , Benchmarking , Neural Networks, Computer
5.
Biophys J ; 104(11): L22-4, 2013 Jun 04.
Article in English | MEDLINE | ID: mdl-23746531

ABSTRACT

We conducted super-resolution light microscopy (LM) imaging of the distribution of ryanodine receptors (RyRs) and caveolin-3 (CAV3) in mouse ventricular myocytes. Quantitative analysis of data at the surface sarcolemma showed that 4.8% of RyR labeling colocalized with CAV3 whereas 3.5% of CAV3 was in areas with RyR labeling. These values increased to 9.2 and 9.0%, respectively, in the interior of myocytes where CAV3 was widely expressed in the t-system but reduced in regions associated with junctional couplings. Electron microscopic (EM) tomography independently showed only few couplings with caveolae and little evidence for caveolar shapes on the t-system. Unexpectedly, both super-resolution LM and three-dimensional EM data (including serial block-face scanning EM) revealed significant increases in local t-system diameters in many regions associated with junctions. We suggest that this regional specialization helps reduce ionic accumulation and depletion in t-system lumen during excitation-contraction coupling to ensure effective local Ca²âº release. Our data demonstrate that super-resolution LM and volume EM techniques complementarily enhance information on subcellular structure at the nanoscale.


Subject(s)
Caveolin 3/chemistry , Caveolin 3/metabolism , Heart Ventricles/cytology , Myocytes, Cardiac/cytology , Nanostructures , Ryanodine Receptor Calcium Release Channel/chemistry , Ryanodine Receptor Calcium Release Channel/metabolism , Animals , Cytosol/metabolism , Mice , Microscopy, Fluorescence , Myocytes, Cardiac/metabolism , Protein Transport
6.
Zhen Ci Yan Jiu ; 48(5): 488-93, 2023 May 25.
Article in Zh | MEDLINE | ID: mdl-37247863

ABSTRACT

OBJECTIVE: To observe the effects of moxibustion on the contents of leukotriene B4 (LTB4), interleukin-17 (IL-17), tumor necrosis factor-α (TNF-α) and matrix metalloproteinase -9 (MMP-9) in serum, and explore the protection mechanisms of moxibustion in the patients with rheumatoid arthritis (RA). METHODS: A total of 64 patients with RA were randomly divided into treatment group (n=31) and control group (n=33). The patients in the control group were treated with conventional medication for consecutive 5 weeks. Based on the treatment in the control group, the patients in the treatment group were treated with moxibustion at bilateral Shenshu (BL23), Zusanli (ST36) and Ashi points, 3 times a week, for consecutive 5 weeks. Separately, the visual analogue scale (VAS) score, morning stiffness score, the number of tender joints, the number of swollen joints, the score of the disease activity score of 28 joints (DAS28) were observed; the contents of rheumatoid factor (RF), erythrocyte sedimentation rate (ESR) and C-reative protein (CRP) in serum were determined by biochemical method; and the contents of LTB4, IL-17, TNF-α and MMP-9 in serum were detected by using ELISA before and after treatment in the patients of both groups. RESULTS: After treatment, VAS score, morning stiffness score, the number of tender joints, the number of swollen joints, DAS28 score, the contents of serum RF in both groups, and contents of serum CRP, ESR, LTB4, IL-17, TNF-α and MMP-9 in the treatment group were significantly reduced when compared with those before treatment (P<0.01, P<0.05). After treatment, VAS score, morning stiffness score, the number of tender joints, the number of swollen joints, DAS28 score, and the levels of LTB4, IL-17 and MMP-9 in serum were obviously lower in the treatment group when compared with the control group (P<0.01, P<0.05). In the treatment group, the changes before and after treatment in the levels of LTB4, IL-17 and TNF-α were positively correlated with that of MMP-9 (P<0.05, r>0). CONCLUSION: Moxibustion at BL23 and ST36 combined with conventional medication significantly relieves joint pain and reduce disease activity in RA patients, which may be related to the modulation of LTB4, IL-17 and MMP-9 by moxibustion.


Subject(s)
Arthritis, Rheumatoid , Moxibustion , Humans , Leukotriene B4 , Interleukin-17/genetics , Tumor Necrosis Factor-alpha/genetics , Matrix Metalloproteinase 9/genetics , Arthritis, Rheumatoid/genetics , Arthritis, Rheumatoid/therapy
7.
J Physiol ; 590(18): 4403-22, 2012 Sep 15.
Article in English | MEDLINE | ID: mdl-22495592

ABSTRACT

Triggered release of Ca2+ from an individual sarcoplasmic reticulum (SR) Ca(2+) release unit (CRU) is the fundamental event of cardiac excitation­contraction coupling, and spontaneous release events (sparks) are the major contributor to diastolic Ca(2+) leak in cardiomyocytes. Previous model studies have predicted that the duration and magnitude of the spark is determined by the local CRU geometry, as well as the localization and density of Ca(2+) handling proteins. We have created a detailed computational model of a CRU, and developed novel tools to generate the computational geometry from electron tomographic images. Ca(2+) diffusion was modelled within the SR and the cytosol to examine the effects of localization and density of the Na(+)/Ca(2+) exchanger, sarco/endoplasmic reticulum Ca(2+)-ATPase 2 (SERCA), and calsequestrin on spark dynamics. We reconcile previous model predictions of approximately 90% local Ca(2+) depletion in junctional SR, with experimental reports of about 40%. This analysis supports the hypothesis that dye kinetics and optical averaging effects can have a significant impact on measures of spark dynamics. Our model also predicts that distributing calsequestrin within non-junctional Z-disc SR compartments, in addition to the junctional compartment, prolongs spark release time as reported by Fluo5. By pumping Ca(2+) back into the SR during a release, SERCA is able to prolong a Ca(2+) spark, and this may contribute to SERCA-dependent changes in Ca(2+) wave speed. Finally, we show that including the Na(+)/Ca(2+) exchanger inside the dyadic cleft does not alter local [Ca(2+)] during a spark.


Subject(s)
Calcium Signaling/physiology , Models, Cardiovascular , Animals , Calcium/physiology , Mice , Sarcoplasmic Reticulum/physiology , Sarcoplasmic Reticulum Calcium-Transporting ATPases/physiology
8.
Comput Aided Geom Des ; 29(9): 707-721, 2012 Dec 01.
Article in English | MEDLINE | ID: mdl-23144522

ABSTRACT

Despite its great success in improving the quality of a tetrahedral mesh, the original optimal Delaunay triangulation (ODT) is designed to move only inner vertices and thus cannot handle input meshes containing "bad" triangles on boundaries. In the current work, we present an integrated approach called boundary-optimized Delaunay triangulation (B-ODT) to smooth (improve) a tetrahedral mesh. In our method, both inner and boundary vertices are repositioned by analytically minimizing the error between a paraboloid function and its piecewise linear interpolation over the neighborhood of each vertex. In addition to the guaranteed volume-preserving property, the proposed algorithm can be readily adapted to preserve sharp features in the original mesh. A number of experiments are included to demonstrate the performance of our method.

9.
Acta Crystallogr Sect E Struct Rep Online ; 68(Pt 10): o2964, 2012 Oct 01.
Article in English | MEDLINE | ID: mdl-23125746

ABSTRACT

The asymmetric unit of the title compound, 2C(8)H(9)N(2) (+)·C(10)H(6)O(6)S(2) (2-), contains a 2-methyl-benzimidazolium cation and one half of a naphthalene-1,5-disulfonate anion. The formula unit is generated by an inversion center. In the crystal, N-H⋯O hydrogen bonds link the components into chains along [001]. In addition, weak C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions are observed. The methyl H atoms were refined as disordered over two sets of sites with equal occupancy.

10.
J Comput Sci Technol ; 27(1): 163-173, 2012 Jan 01.
Article in English | MEDLINE | ID: mdl-22328806

ABSTRACT

We propose in this paper a robust surface mesh denoising method that can effectively remove mesh noise while faithfully preserving sharp features. This method utilizes surface fitting and projection techniques. Sharp features are preserved in the surface fitting algorithm by considering an anisotropic neighborhood of each vertex detected by the normal-weighted distance. In addition, to handle the mesh with a high level of noise, we perform a pre-filtering of surface normals prior to the neighborhood searching. A number of experimental results and comparisons demonstrate the excellent performance of our method in preserving important surface geometries while filtering mesh noise.

11.
Front Aging Neurosci ; 14: 933567, 2022.
Article in English | MEDLINE | ID: mdl-36185473

ABSTRACT

Stroke can be viewed as an acute disruption of an individual's connectome caused by a focal or widespread loss of blood flow. Although individuals exhibit connectivity changes in multiple functional networks after stroke, the neural mechanisms that underlie the longitudinal reorganization of the connectivity patterns are still unclear. The study aimed to determine whether brain network connectivity patterns after stroke can predict longitudinal behavioral outcomes. Nineteen patients with stroke with subcortical lesions underwent two sessions of resting-state functional magnetic resonance imaging scanning at a 1-month interval. By independent component analysis, the functional connectivity within and between multiple brain networks (including the default mode network, the dorsal attention network, the limbic network, the visual network, and the frontoparietal network) was disrupted after stroke and partial recovery at the second time point. Additionally, regression analyses revealed that the connectivity between the limbic and dorsal attention networks at the first time point showed sufficient reliability in predicting the clinical scores (Fugl-Meyer Assessment and Neurological Deficit Scores) at the second time point. The overall findings suggest that functional coupling between the dorsal attention and limbic networks after stroke can be regarded as a biomarker to predict longitudinal clinical outcomes in motor function and the degree of neurological functional deficit. Overall, the present study provided a novel opportunity to improve prognostic ability after subcortical strokes.

12.
Front Neurol ; 13: 996621, 2022.
Article in English | MEDLINE | ID: mdl-36267883

ABSTRACT

Purpose: The purpose of the present study was to explore the longitudinal changes in functional homotopy in the default mode network (DMN) and motor network and its relationships with clinical characteristics in patients with stroke. Methods: Resting-state functional magnetic resonance imaging was performed in stroke patients with subcortical ischemic lesions and healthy controls. The voxel-mirrored homotopic connectivity (VMHC) method was used to examine the differences in functional homotopy in patients with stroke between the two time points. Support vector machine (SVM) and correlation analyses were also applied to investigate whether the detected significant changes in VMHC were the specific feature in patients with stroke. Results: The patients with stroke had significantly lower VMHC in the DMN and motor-related regions than the controls, including in the precuneus, parahippocampus, precentral gyrus, supplementary motor area, and middle frontal gyrus. Longitudinal analysis revealed that the impaired VMHC of the superior precuneus showed a significant increase at the second time point, which was no longer significantly different from the controls. Between the two time points, the changes in VMHC in the superior precuneus were significantly correlated with the changes in clinical scores. SVM analysis revealed that the VMHC of the superior precuneus could be used to correctly identify the patients with stroke from the controls with a statistically significant accuracy of 81.25% (P ≤ 0.003). Conclusions: Our findings indicated that the increased VMHC in the superior precuneus could be regarded as the neuroimaging manifestation of functional recovery. The significant correlation and the discriminative power in classification results might provide novel evidence to understand the neural mechanisms responsible for brain reorganization after stroke.

13.
Adv Wound Care (New Rochelle) ; 11(12): 687-709, 2022 12.
Article in English | MEDLINE | ID: mdl-34544270

ABSTRACT

Significance: Accurately predicting wound healing trajectories is difficult for wound care clinicians due to the complex and dynamic processes involved in wound healing. Wound care teams capture images of wounds during clinical visits generating big datasets over time. Developing novel artificial intelligence (AI) systems can help clinicians diagnose, assess the effectiveness of therapy, and predict healing outcomes. Recent Advances: Rapid developments in computer processing have enabled the development of AI-based systems that can improve the diagnosis and effectiveness of therapy in various clinical specializations. In the past decade, we have witnessed AI revolutionizing all types of medical imaging like X-ray, ultrasound, computed tomography, magnetic resonance imaging, etc., but AI-based systems remain to be developed clinically and computationally for high-quality wound care that can result in better patient outcomes. Critical Issues: In the current standard of care, collecting wound images on every clinical visit, interpreting and archiving the data are cumbersome and time consuming. Commercial platforms are developed to capture images, perform wound measurements, and provide clinicians with a workflow for diagnosis, but AI-based systems are still in their infancy. This systematic review summarizes the breadth and depth of the most recent and relevant work in intelligent image-based data analysis and system developments for wound assessment. Future Directions: With increasing availabilities of massive data (wound images, wound-specific electronic health records, etc.) as well as powerful computing resources, AI-based digital platforms will play a significant role in delivering data-driven care to people suffering from debilitating chronic wounds.


Subject(s)
Artificial Intelligence , Image Processing, Computer-Assisted , Electronic Health Records , Humans , Image Processing, Computer-Assisted/methods , Workflow
14.
Foods ; 11(21)2022 Nov 06.
Article in English | MEDLINE | ID: mdl-36360144

ABSTRACT

As a raw material for beer, barley seeds play a critical role in producing beers with various flavors. Unexcepted mixed varieties of barley seeds make malt quality uncontrollable and can even destroy beer flavors. To ensure the quality and flavor of malts and beers, beer brewers will strictly check the appropriate varieties of barley seeds during the malting process. There are wide varieties of barley seeds with small sizes and similar features. Professionals can visually distinguish these varieties, which can be tedious and time-consuming and have high misjudgment rates. However, biological testing requires professional equipment, reagents, and laboratories, which are expensive. This study aims to build an automatic artificial intelligence detection method to achieve high performance in multi-barley seed datasets. There are nine varieties of barley seeds (CDC Copeland, AC Metcalfe, Hockett, Scarlett, Expedition, AAC Synergy, Celebration, Legacy, and Tradition). We captured images of these original barley seeds using an iPhone 11 Pro. This study used two mixed datasets, including a single-barley seed dataset and a multi-barley seed dataset, to improve the detection accuracy of multi-barley seeds. The multi-barley seed dataset had random amounts and varieties of barley seeds in each image. The single-barley seed dataset had one barley seed in each image. Data augmentation can reduce overfitting and maximize model performance and accuracy. Multi-variety barley seed recognition deploys an efficient data augmentation method to effectively expand the barley dataset. After adjusting the hyperparameters of the networks and analyzing and augmenting the datasets, the YOLOv5 series network was the most effective in training the two barley seed datasets and achieved the highest performance. The YOLOv5x6 network achieved the second highest performance. The mAP (mean Average Precision) of the trained YOLOv5x6 was 97.5%; precision was 98.4%; recall was 98.1%; the average speed of image detection reached 0.024 s. YOLOv5x6 only trained the multi-barley seed dataset; the trained performance was greater than that of the YOLOv5 series. The two datasets had 39.5% higher precision, 27.1% higher recall, and 40.1% higher mAP than when just using the original multi-barley seed dataset. The multi-barley seed detection results showed high performance, robustness, and speed. Therefore, malting and brewing industries can assess the original barley seed quality with the assistance of fast, intelligent, and detected multi-barley seed images.

15.
Sci Rep ; 12(1): 20057, 2022 11 21.
Article in English | MEDLINE | ID: mdl-36414660

ABSTRACT

Wound classification is an essential step of wound diagnosis. An efficient classifier can assist wound specialists in classifying wound types with less financial and time costs and help them decide on an optimal treatment procedure. This study developed a deep neural network-based multi-modal classifier using wound images and their corresponding locations to categorize them into multiple classes, including diabetic, pressure, surgical, and venous ulcers. A body map was also developed to prepare the location data, which can help wound specialists tag wound locations more efficiently. Three datasets containing images and their corresponding location information were designed with the help of wound specialists. The multi-modal network was developed by concatenating the image-based and location-based classifier outputs with other modifications. The maximum accuracy on mixed-class classifications (containing background and normal skin) varies from 82.48 to 100% in different experiments. The maximum accuracy on wound-class classifications (containing only diabetic, pressure, surgical, and venous) varies from 72.95 to 97.12% in various experiments. The proposed multi-modal network also showed a significant improvement in results from the previous works of literature.


Subject(s)
Neural Networks, Computer
16.
PLoS Comput Biol ; 6(10): e1000972, 2010 Oct 28.
Article in English | MEDLINE | ID: mdl-21060856

ABSTRACT

The t-tubules of mammalian ventricular myocytes are invaginations of the cell membrane that occur at each Z-line. These invaginations branch within the cell to form a complex network that allows rapid propagation of the electrical signal, and hence synchronous rise of intracellular calcium (Ca(2+)). To investigate how the t-tubule microanatomy and the distribution of membrane Ca(2+) flux affect cardiac excitation-contraction coupling we developed a 3-D continuum model of Ca(2+) signaling, buffering and diffusion in rat ventricular myocytes. The transverse-axial t-tubule geometry was derived from light microscopy structural data. To solve the nonlinear reaction-diffusion system we extended SMOL software tool (http://mccammon.ucsd.edu/smol/). The analysis suggests that the quantitative understanding of the Ca(2+) signaling requires more accurate knowledge of the t-tubule ultra-structure and Ca(2+) flux distribution along the sarcolemma. The results reveal the important role for mobile and stationary Ca(2+) buffers, including the Ca(2+) indicator dye. In agreement with experiment, in the presence of fluorescence dye and inhibited sarcoplasmic reticulum, the lack of detectible differences in the depolarization-evoked Ca(2+) transients was found when the Ca(2+) flux was heterogeneously distributed along the sarcolemma. In the absence of fluorescence dye, strongly non-uniform Ca(2+) signals are predicted. Even at modest elevation of Ca(2+), reached during Ca(2+) influx, large and steep Ca(2+) gradients are found in the narrow sub-sarcolemmal space. The model predicts that the branched t-tubule structure and changes in the normal Ca(2+) flux density along the cell membrane support initiation and propagation of Ca(2+) waves in rat myocytes.


Subject(s)
Calcium Signaling/physiology , Computational Biology/methods , Models, Biological , Myocytes, Cardiac/metabolism , Sarcoplasmic Reticulum/metabolism , Adenosine Triphosphate/metabolism , Algorithms , Animals , Calmodulin/metabolism , Cells, Cultured , Computer Simulation , Imaging, Three-Dimensional , Myocytes, Cardiac/chemistry , Myocytes, Cardiac/ultrastructure , Rats , Sarcoplasmic Reticulum/chemistry , Sarcoplasmic Reticulum/ultrastructure , Software
17.
Accid Anal Prev ; 159: 106211, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34126276

ABSTRACT

Work zone safety management and research relies heavily on the quality of work zone crash data. However, it is possible that a police officer may misclassify a crash in structured data due to: restrictive options in the crash report; a lack of understanding about their importance; lack of time due to police officers' work load; and ignorance of work zone as one of the crash contributing factors. Consequently, work zone crashes are under representative in crash statistics. Crash narratives contain valuable information that is not included in the structured data. The objective of this study is to develop a classifier that applies text mining techniques to quickly find missed work zone (WZ) crashes through the unstructured text saved in the crash narratives. The study used three-year crash data from 2017 to 2019. The data from 2017 to 2018 was used as training data, and the 2019 data was used as testing data. A unigram + bigram noisy-OR classifier was developed and proven to be an efficient and effective means of classifying work zone crashes based on key information in the crash narrative. The ad-hoc analysis of misclassified work zone crashes sheds light on when, where and the plausible reasons as to why work zone crashes are more likely to be missed.


Subject(s)
Accidents, Traffic , Police , Data Mining , Humans , Narration , Safety Management
18.
Comput Biol Med ; 134: 104536, 2021 07.
Article in English | MEDLINE | ID: mdl-34126281

ABSTRACT

Acute and chronic wounds are a challenge to healthcare systems around the world and affect many people's lives annually. Wound classification is a key step in wound diagnosis that would help clinicians to identify an optimal treatment procedure. Hence, having a high-performance classifier assists wound specialists to classify wound types with less financial and time costs. Different wound classification methods based on machine learning and deep learning have been proposed in the literature. In this study, we have developed an ensemble Deep Convolutional Neural Network-based classifier to categorize wound images into multiple classes including surgical, diabetic, and venous ulcers. The output classification scores of two classifiers (namely, patch-wise and image-wise) are fed into a Multilayer Perceptron to provide a superior classification performance. A 5-fold cross-validation approach is used to evaluate the proposed method. We obtained maximum and average classification accuracy values of 96.4% and 94.28% for binary and 91.9% and 87.7% for 3-class classification problems. The proposed classifier was compared with some common deep classifiers and showed significantly higher accuracy metrics. We also tested the proposed method on the Medetec wound image dataset, and the accuracy values of 91.2% and 82.9% were obtained for binary and 3-class classifications. The results show that our proposed method can be used effectively as a decision support system in classification of wound images or other related clinical applications.


Subject(s)
Machine Learning , Neural Networks, Computer , Humans
19.
Article in English | MEDLINE | ID: mdl-33884025

ABSTRACT

BACKGROUND: Rheumatoid arthritis (RA) is a systemic immunodeficiency disease characterized by persistent synovial inflammation, pannus formation, and bone and cartilage destruction, resulting in joint malformations and function decline. OBJECTIVE: The purpose of this study is to evaluate the effect of moxibustion on clinical symptoms and levels of pain-related indicators beta-endorphin (ß-EP) and dynorphin (Dyn) in patients with RA and to explore the potential anti-inflammatory and analgesic mechanisms of moxibustion in RA treatment. METHODS: A total of 64 patients with RA who met the inclusion criteria were randomly and equally classified into the control and treatment groups. The control group received conventional treatment (oral methotrexate, folate, or leflunomide prescribed for a long time). The treatment group was treated with moxibustion at ST36 (Zusanli), BL23 (Shenshu), and Ashi points with respect to the control group. Patients' clinical symptoms and routine inspection indexes (rheumatoid factor [RF], erythrocyte sedimentation rate [ESR], and C-reactive protein [CRP]) were recorded before and after treatment. Serum levels of tumor necrosis factor-α (TNF-α), interleukin-1ß (IL-1ß), ß-EP, and Dyn were determined by enzyme-linked immunosorbent assay (ELISA). The software SPSS24.0 was used for statistical analysis. RESULTS: (1) Compared with the pretreatment result, both of the two groups' clinical symptoms and routine inspection indexes (RF, ESR, and CRP) improved (P < 0.05), and the improvement of clinical symptoms in the treatment group outperformed that in the control group (P < 0.05). (2) TNF-α and IL-1ß levels decreased significantly in the treatment group after treatment (P < 0.01), while no significant difference was observed in the control group (P > 0.05). (3) ß-EP and Dyn levels in the treatment group were significantly increased after treatment (P < 0.01, P < 0.01), but the control group showed no significant difference (P > 0.05, P > 0.05). It is worth mentioning that the serum TNF-α, IL-1ß, ß-EP, and Dyn levels between the two groups were significantly different after 8 weeks of treatment (P < 0.05). (4) Differences in the serum ß-EP and Dyn levels in the patients of the treatment group were correlated with TNF-α and IL-1ß levels after treatment, and the correlation was mainly negative (r < 0). CONCLUSION: Moxibustion can improve joint pain in patients with RA using conventional western medicine. One of the mechanisms may affect the serum ß-EP and Dyn levels by downregulating the inflammatory factors to play an anti-inflammatory and analgesic role.

20.
Medicine (Baltimore) ; 99(22): e20338, 2020 May 29.
Article in English | MEDLINE | ID: mdl-32481411

ABSTRACT

BACKGROUND: Data mining technology used in the field of medicine has been widely studied by scholars all over the world. But there is little research on medical data mining (MDM) from the perspectives of bibliometrics and visualization, and the research topics and development trends in this field are still unclear. METHODS: This paper has applied bibliometric visualization software tools, VOSviewer 1.6.10 and CiteSpace V, to study the citation characteristics, international cooperation, author cooperation, and geographical distribution of the MDM. RESULTS: A total of 1575 documents are obtained, and the most frequent document type is article (1376). SHAN NH is the most productive author, with the highest number of publications of 12, and the Gillies's article (750 times citation) is the most cited paper. The most productive country and institution in MDM is the USA (559) and US FDA (35), respectively. The Journal of Biomedical Informatics, Expert Systems with Applications and Journal of Medical Systems are the most productive journals, which reflected the nature of the research, and keywords "classification (790)" and "system (576)" have the strongest strength. The hot topics in MDM are drug discovery, medical imaging, vaccine safety, and so on. The 3 frontier topics are reporting system, precision medicine, and inflammation, and would be the foci of future research. CONCLUSION: The present study provides a panoramic view of data mining methods applied in medicine by visualization and bibliometrics. Analysis of authors, journals, institutions, and countries could provide reference for researchers who are fresh to the field in different ways. Researchers may also consider the emerging trends when deciding the direction of their study.


Subject(s)
Bibliometrics , Biomedical Research/statistics & numerical data , Data Mining/methods , Humans
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