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1.
Cereb Cortex ; 33(7): 3575-3590, 2023 03 21.
Article in English | MEDLINE | ID: mdl-35965076

ABSTRACT

Brain cartography has expanded substantially over the past decade. In this regard, resting-state functional connectivity (FC) plays a key role in identifying the locations of putative functional borders. However, scant attention has been paid to the dynamic nature of functional interactions in the human brain. Indeed, FC is typically assumed to be stationary across time, which may obscure potential or subtle functional boundaries, particularly in regions with high flexibility and adaptability. In this study, we developed a dynamic FC (dFC)-based parcellation framework, established a new functional human brain atlas termed D-BFA (DFC-based Brain Functional Atlas), and verified its neurophysiological plausibility by stereo-EEG data. As the first dFC-based whole-brain atlas, the proposed D-BFA delineates finer functional boundaries that cannot be captured by static FC, and is further supported by good correspondence with cytoarchitectonic areas and task activation maps. Moreover, the D-BFA reveals the spatial distribution of dynamic variability across the brain and generates more homogenous parcels compared with most alternative parcellations. Our results demonstrate the superiority and practicability of dFC in brain parcellation, providing a new template to exploit brain topographic organization from a dynamic perspective. The D-BFA will be publicly available for download at https://github.com/sliderplm/D-BFA-618.


Subject(s)
Brain , Magnetic Resonance Imaging , Humans , Magnetic Resonance Imaging/methods , Brain/diagnostic imaging , Brain/physiology , Brain Mapping/methods
2.
Cereb Cortex ; 32(14): 2972-2984, 2022 07 12.
Article in English | MEDLINE | ID: mdl-34791082

ABSTRACT

Limited sample size hinders the application of deep learning in brain image analysis, and transfer learning is a possible solution. However, most pretrained models are 2D based and cannot be applied directly to 3D brain images. In this study, we propose a novel framework to apply 2D pretrained models to 3D brain images by projecting surface-based cortical morphometry into planar images using computational geometry mapping. Firstly, 3D cortical meshes are reconstructed from magnetic resonance imaging (MRI) using FreeSurfer and projected into 2D planar meshes with topological preservation based on area-preserving geometry mapping. Then, 2D deep models pretrained on ImageNet are adopted and fine-tuned for cortical image classification on morphometric shape metrics. We apply the framework to sex classification on the Human Connectome Project dataset and autism spectrum disorder (ASD) classification on the Autism Brain Imaging Data Exchange dataset. Moreover, a 2-stage transfer learning strategy is suggested to boost the ASD classification performance by using the sex classification as an intermediate task. Our framework brings significant improvement in sex classification and ASD classification with transfer learning. In summary, the proposed framework builds a bridge between 3D cortical data and 2D models, making 2D pretrained models available for brain image analysis in cognitive and psychiatric neuroscience.


Subject(s)
Autism Spectrum Disorder , Autism Spectrum Disorder/diagnostic imaging , Autism Spectrum Disorder/pathology , Brain/pathology , Brain Mapping/methods , Cerebral Cortex/diagnostic imaging , Humans , Machine Learning , Magnetic Resonance Imaging
3.
Hum Brain Mapp ; 43(1): 56-82, 2022 01.
Article in English | MEDLINE | ID: mdl-32725849

ABSTRACT

MRI-derived brain measures offer a link between genes, the environment and behavior and have been widely studied in bipolar disorder (BD). However, many neuroimaging studies of BD have been underpowered, leading to varied results and uncertainty regarding effects. The Enhancing Neuro Imaging Genetics through Meta-Analysis (ENIGMA) Bipolar Disorder Working Group was formed in 2012 to empower discoveries, generate consensus findings and inform future hypothesis-driven studies of BD. Through this effort, over 150 researchers from 20 countries and 55 institutions pool data and resources to produce the largest neuroimaging studies of BD ever conducted. The ENIGMA Bipolar Disorder Working Group applies standardized processing and analysis techniques to empower large-scale meta- and mega-analyses of multimodal brain MRI and improve the replicability of studies relating brain variation to clinical and genetic data. Initial BD Working Group studies reveal widespread patterns of lower cortical thickness, subcortical volume and disrupted white matter integrity associated with BD. Findings also include mapping brain alterations of common medications like lithium, symptom patterns and clinical risk profiles and have provided further insights into the pathophysiological mechanisms of BD. Here we discuss key findings from the BD working group, its ongoing projects and future directions for large-scale, collaborative studies of mental illness.


Subject(s)
Bipolar Disorder , Cerebral Cortex , Magnetic Resonance Imaging , Neuroimaging , Bipolar Disorder/diagnostic imaging , Bipolar Disorder/pathology , Cerebral Cortex/diagnostic imaging , Cerebral Cortex/pathology , Humans , Meta-Analysis as Topic , Multicenter Studies as Topic
4.
Epilepsia ; 63(12): 3192-3203, 2022 12.
Article in English | MEDLINE | ID: mdl-36196770

ABSTRACT

OBJECTIVE: Cortical tremor/myoclonus is the hallmark feature of benign adult familial myoclonic epilepsy (BAFME), the mechanism of which remains elusive. A hypothesis is that a defective control in the preexisting cerebellar-motor loop drives cortical tremor. Meanwhile, the basal ganglia system might also participate in BAFME. This study aimed to discover the structural basis of cortical tremor/myoclonus in BAFME. METHODS: Nineteen patients with BAFME type 1 (BAFME1) and 30 matched healthy controls underwent T1-weighted and diffusion tensor imaging scans. FreeSurfer and spatially unbiased infratentorial template (SUIT) toolboxes were utilized to assess the motor cortex and the cerebellum. Probabilistic tractography was generated for two fibers to test the hypothesis: the dentato-thalamo-(M1) (primary motor cortex) and globus pallidus internus (GPi)-thalamic projections. Average fractional anisotropy (FA), axial diffusivity (AD), mean diffusivity (MD), and radial diffusivity (RD) of each tract were extracted. RESULTS: Cerebellar atrophy and dentate nucleus alteration were observed in the patients. In addition, patients with BAFME1 exhibited reduced AD and FA in the left and right dentato-thalamo-M1 nondecussating fibers, respectively false discovery rate (FDR) correction q < .05. Cerebellar projections showed negative correlations with somatosensory-evoked potential P25-N33 amplitude and were independent of disease duration and medication. BAFME1 patients also had increased FA and decreased MD in the left GPi-thalamic projection. Higher FA and lower RD in the right GPi-thalamic projection were also observed (FDR q < .05). SIGNIFICANCE: The present findings support the hypothesis that the cerebello-thalamo-M1 loop might be the structural basis of cortical tremor in BAFME1. The basal ganglia system also participates in BAFME1 and probably serves a regulatory role.


Subject(s)
Diffusion Tensor Imaging , Epilepsies, Myoclonic , Humans , Adult , Epilepsies, Myoclonic/diagnostic imaging
5.
Hum Brain Mapp ; 42(5): 1416-1433, 2021 04 01.
Article in English | MEDLINE | ID: mdl-33283954

ABSTRACT

Until now, dynamic functional connectivity (dFC) based on functional magnetic resonance imaging is typically estimated on a set of predefined regions of interest (ROIs) derived from an anatomical or static functional atlas which follows an implicit assumption of functional homogeneity within ROIs underlying temporal fluctuation of functional coupling, potentially leading to biases or underestimation of brain network dynamics. Here, we presented a novel computational method based on dynamic functional connectivity degree (dFCD) to derive meaningful brain parcellations that can capture functional homogeneous regions in temporal variance of functional connectivity. Several spatially distributed but functionally meaningful areas that are well consistent with known intrinsic connectivity networks were identified through independent component analysis (ICA) of time-varying dFCD maps. Furthermore, a systematical comparison with commonly used brain atlases, including the Anatomical Automatic Labeling template, static ICA-driven parcellation and random parcellation, demonstrated that the ROI-definition strategy based on the proposed dFC-driven parcellation could better capture the interindividual variability in dFC and predict observed individual cognitive performance (e.g., fluid intelligence, cognitive flexibility, and sustained attention) based on chronnectome. Together, our findings shed new light on the functional organization of resting brains at the timescale of seconds and emphasized the significance of a dFC-driven and voxel-wise functional homogeneous parcellation for network dynamics analyses in neuroscience.


Subject(s)
Cerebellum , Cerebral Cortex , Connectome/methods , Default Mode Network , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Nerve Net , Adult , Atlases as Topic , Cerebellum/diagnostic imaging , Cerebellum/physiology , Cerebral Cortex/diagnostic imaging , Cerebral Cortex/physiology , Connectome/standards , Default Mode Network/diagnostic imaging , Default Mode Network/physiology , Humans , Image Processing, Computer-Assisted/standards , Magnetic Resonance Imaging/standards , Nerve Net/diagnostic imaging , Nerve Net/physiology , Support Vector Machine , Time Factors
6.
Hum Brain Mapp ; 42(2): 329-344, 2021 02 01.
Article in English | MEDLINE | ID: mdl-33064332

ABSTRACT

Antisocial behavior (ASB) is believed to have neural substrates; however, the association between ASB and functional brain networks remains unclear. The temporal variability of the functional connectivity (or dynamic FC) derived from resting-state functional MRI has been suggested as a useful metric for studying abnormal behaviors including ASB. This is the first study using low-frequency fluctuations of the dynamic FC to unravel potential system-level neural correlates with ASB. Specifically, we individually associated the dynamic FC patterns with the ASB scores (measured by Antisocial Process Screening Device) of the male offenders (age: 23.29 ± 3.36 years) based on machine learning. Results showed that the dynamic FCs were associated with individual ASB scores. Moreover, we found that it was mainly the inter-network dynamic FCs that were negatively associated with the ASB severity. Three major high-order cognitive functional networks and the sensorimotor network were found to be more associated with ASB. We further found that impaired behavior in the ASB subjects was mainly associated with decreased FC dynamics in these networks, which may explain why ASB subjects usually have impaired executive control and emotional processing functions. Our study shows that temporal variation of the FC could be a promising tool for ASB assessment, treatment, and prevention.


Subject(s)
Antisocial Personality Disorder/diagnostic imaging , Antisocial Personality Disorder/psychology , Brain/diagnostic imaging , Nerve Net/diagnostic imaging , Adolescent , Adult , Humans , Magnetic Resonance Imaging/methods , Male , Young Adult
7.
Cereb Cortex ; 30(1): 269-282, 2020 01 10.
Article in English | MEDLINE | ID: mdl-31044223

ABSTRACT

The human precuneus is involved in many high-level cognitive functions, which strongly suggests the existence of biologically meaningful subdivisions. However, the functional parcellation of the precuneus needs much to be investigated. In this study, we developed an eigen clustering (EIC) approach for the parcellation using precuneus-cortical functional connectivity from fMRI data of the Human Connectome Project. The EIC approach is robust to noise and can automatically determine the cluster number. It is consistently demonstrated that the human precuneus can be subdivided into six symmetrical and connected parcels. The anterior and posterior precuneus participate in sensorimotor and visual functions, respectively. The central precuneus with four subregions indicates a media role in the interaction of the default mode, dorsal attention, and frontoparietal control networks. The EIC-based functional parcellation is free of the spatial distance constraint and is more functionally coherent than parcellation using typical clustering algorithms. The precuneus subregions had high accordance with cortical morphology and revealed good functional segregation and integration characteristics in functional task-evoked activations. This study may shed new light on the human precuneus function at a delicate level and offer an alternative scheme for human brain parcellation.


Subject(s)
Connectome/methods , Parietal Lobe/anatomy & histology , Parietal Lobe/physiology , Adult , Cluster Analysis , Female , Humans , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging , Male , Neural Pathways/anatomy & histology , Neural Pathways/physiology , Young Adult
8.
Neuroimage ; 173: 127-145, 2018 06.
Article in English | MEDLINE | ID: mdl-29476914

ABSTRACT

Recently, resting-state functional magnetic resonance imaging (fMRI) studies have been extended to explore fluctuations in correlations over shorter timescales, referred to as dynamic functional connectivity (dFC). However, the impact of global signal regression (GSR) on dFC is not well established, despite the intensive investigations of the influence of GSR on static functional connectivity (sFC). This study aimed to examine the effect of GSR on the performance of the sliding-window correlation, a commonly used method for capturing functional connectivity (FC) dynamics based on resting-state fMRI and simultaneous electroencephalograph (EEG)-fMRI data. The results revealed that the impact of GSR on dFC was spatially heterogeneous, with some susceptible regions including the occipital cortex, sensorimotor area, precuneus, posterior insula and superior temporal gyrus, and that the impact was temporally modulated by the mean global signal (GS) magnitude across windows. Furthermore, GSR substantially changed the connectivity structures of the FC states responding to a high GS magnitude, as well as their temporal features, and even led to the emergence of new FC states. Conversely, those FC states marked by obvious anti-correlation structures associated with the default model network (DMN) were largely unaffected by GSR. Finally, we reported an association between the fluctuations in the windowed magnitude of GS and the time-varying EEG power within subjects, which implied changes in mental states underlying GS dynamics. Overall, this study suggested a potential neuropsychological basis, in addition to nuisance sources, for GS dynamics and highlighted the need for caution in applying GSR to sliding-window correlation analyses. At a minimum, the mental fluctuations of an individual subject, possibly related to ongoing vigilance, should be evaluated during the entire scan when the dynamics of FC is estimated.


Subject(s)
Brain Mapping/methods , Brain/physiology , Models, Neurological , Nerve Net/physiology , Electroencephalography/methods , Humans , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Signal Processing, Computer-Assisted
9.
Hum Brain Mapp ; 38(9): 4671-4689, 2017 09.
Article in English | MEDLINE | ID: mdl-28627049

ABSTRACT

Past studies on drawing group inferences for functional magnetic resonance imaging (fMRI) data usually assume that a brain region is involved in only one functional brain network. However, recent evidence has demonstrated that some brain regions might simultaneously participate in multiple functional networks. Here, we presented a novel approach for making group inferences using sparse representation of resting-state fMRI data and its application to the identification of changes in functional networks in the brains of 37 healthy young adult participants after 36 h of sleep deprivation (SD) in contrast to the rested wakefulness (RW) stage. Our analysis based on group-level sparse representation revealed that multiple functional networks involved in memory, emotion, attention, and vigilance processing were impaired by SD. Of particular interest, the thalamus was observed to contribute to multiple functional networks in which differentiated response patterns were exhibited. These results not only further elucidate the impact of SD on brain function but also demonstrate the ability of the proposed approach to provide new insights into the functional organization of the resting-state brain by permitting spatial overlap between networks and facilitating the description of the varied relationships of the overlapping regions with other regions of the brain in the context of different functional systems. Hum Brain Mapp 38:4671-4689, 2017. © 2017 Wiley Periodicals, Inc.


Subject(s)
Brain Mapping/methods , Brain/physiology , Brain/physiopathology , Magnetic Resonance Imaging/methods , Sleep Deprivation/physiopathology , Brain/diagnostic imaging , Humans , Male , Reproducibility of Results , Rest , Sleep Deprivation/diagnostic imaging , Wakefulness/physiology , Young Adult
10.
Cerebellum ; 16(1): 151-157, 2017 02.
Article in English | MEDLINE | ID: mdl-27138531

ABSTRACT

Parkinson's disease (PD) is one of the most common neurodegenerative disorders in the world. Previous studies have focused on the basal ganglia and cerebral cortices. To date, the cerebellum has not been systematically investigated in patients with PD. In the current study, 45 probable PD patients and 40 age- and gender-matched healthy controls underwent structural magnetic resonance imaging, and we used support vector machines combining with voxel-based morphometry to explore the cerebellar structural changes in the probable PD patients relative to healthy controls. The results revealed that the gray matter alterations were primarily located within the cerebellar Crus I, implying a possible important role of this region in PD. Furthermore, the gray matter alterations in the cerebellum could differentiate the probable PD patients from healthy controls with accuracies of more than 95 % (p < 0.001, permutation test) via cross-validation, suggesting the potential of analyzing the cerebellum in the clinical diagnosis of PD.


Subject(s)
Cerebellum/diagnostic imaging , Gray Matter/diagnostic imaging , Image Interpretation, Computer-Assisted , Magnetic Resonance Imaging , Parkinson Disease/diagnostic imaging , Female , Humans , Image Interpretation, Computer-Assisted/methods , Male , Mental Status Schedule , Middle Aged , Parkinson Disease/classification , Severity of Illness Index , Support Vector Machine
11.
Proc Natl Acad Sci U S A ; 111(16): 6058-62, 2014 Apr 22.
Article in English | MEDLINE | ID: mdl-24711399

ABSTRACT

Individual differences in brain metrics, especially connectivity measured with functional MRI, can correlate with differences in motion during data collection. The assumption has been that motion causes artifactual differences in brain connectivity that must and can be corrected. Here we propose that differences in brain connectivity can also represent a neurobiological trait that predisposes to differences in motion. We support this possibility with an analysis of intra- versus intersubject differences in connectivity comparing high- to low-motion subgroups. Intersubject analysis identified a correlate of head motion consisting of reduced distant functional connectivity primarily in the default network in individuals with high head motion. Similar connectivity differences were not found in analysis of intrasubject data. Instead, this correlate of head motion was a stable property in individuals across time. These findings suggest that motion-associated differences in brain connectivity cannot fully be attributed to motion artifacts but rather also reflect individual variability in functional organization.


Subject(s)
Brain/physiology , Motion , Neuroimaging/methods , Female , Head , Humans , Magnetic Resonance Imaging , Male , Nerve Net/physiology , Young Adult
12.
Neuroimage ; 124(Pt A): 367-378, 2016 Jan 01.
Article in English | MEDLINE | ID: mdl-26363345

ABSTRACT

An increasing number of neuroimaging studies have suggested that the fluctuations of low-frequency resting-state functional connectivity (FC) are not noise but are instead linked to the shift between distinct cognitive states. However, there is very limited knowledge about whether and how the fluctuations of FC at rest are influenced by long-term training and experience. Here, we investigated how the dynamics of resting-state FC are linked to driving behavior by comparing 20 licensed taxi drivers with 20 healthy non-drivers using a sliding window approach. We found that the driving experience could be effectively decoded with 90% (p<0.001) accuracy by the amplitude of low-frequency fluctuations in some specific connections, based on a multivariate pattern analysis technique. Interestingly, the majority of these connections fell within a set of distributed regions named "the vigilance network". Moreover, the decreased amplitude of the FC fluctuations within the vigilance network in the drivers was negatively correlated with the number of years that they had driven a taxi. Furthermore, temporally quasi-stable functional connectivity segmentation revealed significant differences between the drivers and non-drivers in the dwell time of specific vigilance-related transient brain states, although the brain's repertoire of functional states was preserved. Overall, these results suggested a significant link between the changes in the time-dependent aspects of resting-state FC within the vigilance network and long-term driving experiences. The results not only improve our understanding of how the brain supports driving behavior but also shed new light on the relationship between the dynamics of functional brain networks and individual behaviors.


Subject(s)
Attention/physiology , Brain/physiology , Neural Pathways/physiology , Adult , Automobile Driving , Brain Mapping , Female , Humans , Magnetic Resonance Imaging , Male , Middle Aged , Multivariate Analysis
13.
Epilepsia ; 57(6): 941-8, 2016 06.
Article in English | MEDLINE | ID: mdl-27037791

ABSTRACT

OBJECTIVE: The pathogenesis of benign adult familial myoclonic epilepsy (BAFME) remains unknown, although cerebellar pathologic changes and brain hyperexcitability have been reported. We used resting-state functional magnetic resonance imaging (fMRI) to examine the functional connectivity between the cerebellum and cerebrum in a Chinese family with BAFME for the first time. METHODS: Eleven adults with BAFME and 15 matched healthy controls underwent resting-state blood oxygen level-dependent (BOLD) fMRI scanning. The cerebellar seeds, including the bilateral crus I, lobule VIII, lobule VIIb, and lobule IV&V, were defined a priori. Next, regional time courses were obtained for each individual by averaging the BOLD time series over all voxels in each seed region. Then, seed-based functional connectivity z-maps were produced by computing Pearson's correlation coefficients (converted to z-scores by Fisher transformation) between each seed signal and the time series from all other voxels within the entire brain. Finally, a second-level random-effect two-sample t-test was performed on the individual z-maps in a voxel-wise manner. RESULTS: Reduced functional connectivity of the right cerebellar crus I with the left middle frontal gyrus and right cerebellar lobule IX was observed in the default network of BAFME. Enhanced functional connectivity of the left cerebellar lobule VIII with the bilateral middle temporal gyri, right putamen, and left cerebellar crus I was found in the dorsal attention network of BAFME. Enhanced functional connectivity between the left cerebellar lobule VIIb and right frontal pole was found in the control network of BAFME. SIGNIFICANCE: Altered cerebellar-cerebral functional connectivity may contribute to the understanding of the nosogenesis of BAFME and explain the cognitive dysfunction in this Chinese family with BAFME.


Subject(s)
Cerebellum/physiopathology , Cerebral Cortex/physiopathology , Epilepsies, Myoclonic/physiopathology , Neural Pathways/physiology , Adolescent , Adult , Case-Control Studies , Cerebellum/diagnostic imaging , Cerebral Cortex/diagnostic imaging , Electroencephalography , Electromyography , Epilepsies, Myoclonic/diagnostic imaging , Female , Functional Laterality/physiology , Humans , Image Processing, Computer-Assisted , Magnetic Resonance Imaging , Male , Mental Status Schedule , Middle Aged , Neural Pathways/diagnostic imaging , Neuropsychological Tests , Oxygen/blood , Young Adult
14.
Hum Brain Mapp ; 35(4): 1630-41, 2014 Apr.
Article in English | MEDLINE | ID: mdl-23616377

ABSTRACT

The current diagnosis of psychiatric disorders including major depressive disorder based largely on self-reported symptoms and clinical signs may be prone to patients' behaviors and psychiatrists' bias. This study aims at developing an unsupervised machine learning approach for the accurate identification of major depression based on single resting-state functional magnetic resonance imaging scans in the absence of clinical information. Twenty-four medication-naive patients with major depression and 29 demographically similar healthy individuals underwent resting-state functional magnetic resonance imaging. We first clustered the voxels within the perigenual cingulate cortex into two subregions, a subgenual region and a pregenual region, according to their distinct resting-state functional connectivity patterns and showed that a maximum margin clustering-based unsupervised machine learning approach extracted sufficient information from the subgenual cingulate functional connectivity map to differentiate depressed patients from healthy controls with a group-level clustering consistency of 92.5% and an individual-level classification consistency of 92.5%. It was also revealed that the subgenual cingulate functional connectivity network with the highest discriminative power primarily included the ventrolateral and ventromedial prefrontal cortex, superior temporal gyri and limbic areas, indicating that these connections may play critical roles in the pathophysiology of major depression. The current study suggests that subgenual cingulate functional connectivity network signatures may provide promising objective biomarkers for the diagnosis of major depression and that maximum margin clustering-based unsupervised machine learning approaches may have the potential to inform clinical practice and aid in research on psychiatric disorders.


Subject(s)
Brain Mapping/methods , Depressive Disorder, Major/diagnosis , Depressive Disorder, Major/physiopathology , Magnetic Resonance Imaging/methods , Adult , Artificial Intelligence , Female , Gyrus Cinguli/physiopathology , Humans , Male , Neural Pathways/physiopathology , Rest/physiology , Signal Processing, Computer-Assisted
15.
iScience ; 27(3): 109206, 2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38439977

ABSTRACT

The cognitive and behavioral functions of the human brain are supported by its frequency multiplexing mechanism. However, there is limited understanding of the dynamics of the functional network topology. This study aims to investigate the frequency-specific topology of the functional human brain using 7T rs-fMRI data. Frequency-specific parcellations were first performed, revealing frequency-dependent dynamics within the frontoparietal control, parietal memory, and visual networks. An intrinsic functional atlas containing 456 parcels was proposed and validated using stereo-EEG. Graph theory analysis suggested that, in addition to the task-positive vs. task-negative organization observed in static networks, there was a cognitive control system additionally from a frequency perspective. The reproducibility and plausibility of the identified hub sets were confirmed through 3T fMRI analysis, and their artificial removal had distinct effects on network topology. These results indicate a more intricate and subtle dynamics of the functional human brain and emphasize the significance of accurate topography.

16.
Brain Res Bull ; 210: 110925, 2024 May.
Article in English | MEDLINE | ID: mdl-38493835

ABSTRACT

Previous resting-state functional magnetic resonance imaging (rs-fMRI) studies have widely explored the temporal connection changes in the human brain following long-term sleep deprivation (SD). However, the frequency-specific topological properties of sleep-deprived functional networks remain virtually unclear. In this study, thirty-seven healthy male subjects underwent resting-state fMRI during rested wakefulness (RW) and after 36 hours of SD, and we examined frequency-specific spectral connection changes (0.01-0.08 Hz, interval = 0.01 Hz) caused by SD. First, we conducted a multivariate pattern analysis combining linear SVM classifiers with a robust feature selection algorithm, and the results revealed that accuracies of 74.29%-84.29% could be achieved in the classification between RW and SD states in leave-one-out cross-validation at different frequency bands, moreover, the spectral connection at the lowest and highest frequency bands exhibited higher discriminative power. Connection involving the cingulo-opercular network increased most, while connection involving the default-mode network decreased most following SD. Then we performed a graph-theoretic analysis and observed reduced low-frequency modularity and high-frequency global efficiency in the SD state. Moreover, hub regions, which were primarily situated in the cerebellum and the cingulo-opercular network after SD, exhibited high discriminative power in the aforementioned classification consistently. The findings may indicate the frequency-dependent effects of SD on the functional network topology and its efficiency of information exchange, providing new insights into the impact of SD on the human brain.


Subject(s)
Brain Mapping , Sleep Deprivation , Humans , Male , Sleep Deprivation/diagnostic imaging , Neural Pathways/pathology , Brain/pathology , Wakefulness , Magnetic Resonance Imaging/methods
17.
iScience ; 27(5): 109617, 2024 May 17.
Article in English | MEDLINE | ID: mdl-38660401

ABSTRACT

Long-term manned spaceflight and extraterrestrial planet settlement become the focus of space powers. However, the potential influence of closed and socially isolating spaceflight on the brain function remains unclear. A 180-day controlled ecological life support system integrated experiment was conducted, establishing a spaceflight analog environment to explore the effect of long-term socially isolating living. Three crewmembers were enrolled and underwent resting-state fMRI scanning before and after the experiment. We performed both seed-based and network-based analyses to investigate the functional connectivity (FC) changes of the default mode network (DMN), considering its key role in multiple higher-order cognitive functions. Compared with normal controls, the leader of crewmembers exhibited significantly reduced within-DMN and between-DMN FC after the experiment, while two others exhibited opposite trends. Moreover, individual differences of FC changes were further supported by evidence from behavioral analyses. The findings may shed new light on the development of psychological protection for space exploration.

18.
Brain ; 135(Pt 5): 1498-507, 2012 May.
Article in English | MEDLINE | ID: mdl-22418737

ABSTRACT

Recent resting-state functional connectivity magnetic resonance imaging studies have shown significant group differences in several regions and networks between patients with major depressive disorder and healthy controls. The objective of the present study was to investigate the whole-brain resting-state functional connectivity patterns of depressed patients, which can be used to test the feasibility of identifying major depressive individuals from healthy controls. Multivariate pattern analysis was employed to classify 24 depressed patients from 29 demographically matched healthy volunteers. Permutation tests were used to assess classifier performance. The experimental results demonstrate that 94.3% (P < 0.0001) of subjects were correctly classified by leave-one-out cross-validation, including 100% identification of all patients. The majority of the most discriminating functional connections were located within or across the default mode network, affective network, visual cortical areas and cerebellum, thereby indicating that the disease-related resting-state network alterations may give rise to a portion of the complex of emotional and cognitive disturbances in major depression. Moreover, the amygdala, anterior cingulate cortex, parahippocampal gyrus and hippocampus, which exhibit high discriminative power in classification, may play important roles in the pathophysiology of this disorder. The current study may shed new light on the pathological mechanism of major depression and suggests that whole-brain resting-state functional connectivity magnetic resonance imaging may provide potential effective biomarkers for its clinical diagnosis.


Subject(s)
Brain Mapping , Brain/blood supply , Brain/pathology , Depressive Disorder, Major/diagnosis , Magnetic Resonance Imaging/methods , Adolescent , Adult , Female , Humans , Image Processing, Computer-Assisted , Male , Middle Aged , Neural Pathways/blood supply , Neural Pathways/pathology , Oxygen/blood , Young Adult
19.
Biomed Eng Online ; 12: 10, 2013 Feb 07.
Article in English | MEDLINE | ID: mdl-23390976

ABSTRACT

BACKGROUND: Recently, a growing number of neuroimaging studies have begun to investigate the brains of schizophrenic patients and their healthy siblings to identify heritable biomarkers of this complex disorder. The objective of this study was to use multiclass pattern analysis to investigate the inheritable characters of schizophrenia at the individual level, by comparing whole-brain resting-state functional connectivity of patients with schizophrenia to their healthy siblings. METHODS: Twenty-four schizophrenic patients, twenty-five healthy siblings and twenty-two matched healthy controls underwent the resting-state functional Magnetic Resonance Imaging (rs-fMRI) scanning. A linear support vector machine along with principal component analysis was used to solve the multi-classification problem. By reconstructing the functional connectivities with high discriminative power, three types of functional connectivity-based signatures were identified: (i) state connectivity patterns, which characterize the nature of disruption in the brain network of patients with schizophrenia; (ii) trait connectivity patterns, reflecting shared connectivities of dysfunction in patients with schizophrenia and their healthy siblings, thereby providing a possible neuroendophenotype and revealing the genetic vulnerability to develop schizophrenia; and (iii) compensatory connectivity patterns, which underlie special brain connectivities by which healthy siblings might compensate for an increased genetic risk for developing schizophrenia. RESULTS: Our multiclass pattern analysis achieved 62.0% accuracy via leave-one-out cross-validation (p < 0.001). The identified state patterns related to the default mode network, the executive control network and the cerebellum. For the trait patterns, functional connectivities between the cerebellum and the prefrontal lobe, the middle temporal gyrus, the thalamus and the middle temporal poles were identified. Connectivities among the right precuneus, the left middle temporal gyrus, the left angular and the left rectus, as well as connectivities between the cingulate cortex and the left rectus showed higher discriminative power in the compensatory patterns. CONCLUSIONS: Based on our experimental results, we saw some indication of differences in functional connectivity patterns in the healthy siblings of schizophrenic patients compared to other healthy individuals who have no relations with the patients. Our preliminary investigation suggested that the use of resting-state functional connectivities as classification features to discriminate among schizophrenic patients, their healthy siblings and healthy controls is meaningful.


Subject(s)
Magnetic Resonance Imaging/methods , Schizophrenia/diagnosis , Schizophrenia/physiopathology , Adolescent , Adult , Case-Control Studies , Cerebellum/physiopathology , Databases, Factual , Female , Frontal Lobe/physiopathology , Functional Neuroimaging/methods , Gyrus Cinguli/physiopathology , Humans , Image Processing, Computer-Assisted , Male , Multivariate Analysis , Parietal Lobe/physiopathology , Principal Component Analysis , Reproducibility of Results , Rest/physiology , Schizophrenia/genetics , Siblings , Software , Temporal Lobe/physiopathology , Young Adult
20.
IEEE Trans Pattern Anal Mach Intell ; 45(8): 9306-9324, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37021891

ABSTRACT

In many dynamic environment applications, with the evolution of data collection ways, the data attributes are incremental and the samples are stored with accumulated feature spaces gradually. For instance, in the neuroimaging-based diagnosis of neuropsychiatric disorders, with emerging of diverse testing ways, we get more brain image features over time. The accumulation of different types of features will unavoidably bring difficulties in manipulating the high-dimensional data. It is challenging to design an algorithm to select valuable features in this feature incremental scenario. To address this important but rarely studied problem, we propose a novel Adaptive Feature Selection method (AFS). It enables the reusability of the feature selection model trained on previous features and adapts it to fit the feature selection requirements on all features automatically. Besides, an ideal l0-norm sparse constraint for feature selection is imposed with a proposed effective solving strategy. We present the theoretical analyses about the generalization bound and convergence behavior. After tackling this problem in a one-shot case, we extend it to the multi-shot scenario. Plenty of experimental results demonstrate the effectiveness of reusing previous features and the superior of l0-norm constraint in various aspects, together with its effectiveness in discriminating schizophrenic patients from healthy controls.


Subject(s)
Algorithms , Brain , Humans , Brain/diagnostic imaging , Neuroimaging
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