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1.
Glob Chang Biol ; 30(1): e17120, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38273495

ABSTRACT

Shallow thermokarst lakes are important sources of greenhouse gases (GHGs) such as methane (CH4 ) and carbon dioxide (CO2 ) resulting from continuous permafrost thawing due to global warming. Concentrations of GHGs dissolved in water typically increase with decreasing lake size due to coastal abrasion and organic matter delivery. We hypothesized that (i) CH4 oxidation depends on the natural oxygenation gradient in the lake water and sediments and increases with lake size because of stronger wind-induced water mixing; (ii) CO2 production increases with decreasing lake size, following the dissolved organic matter gradient; and (iii) both processes are more intensive in the upper than deeper sediments due to the in situ gradients of oxygen (O2 ) and bioavailable carbon. We estimated aerobic CH4 oxidation potentials and CO2 production based on the injection of 13 C-labeled CH4 in the 0-10 cm and 10-20 cm sediment depths of small (~300 m2 ), medium (~3000 m2 ), and large (~106 m2 ) shallow thermokarst lakes in the West Siberian Lowland. The CO2 production was 1.4-3.5 times stronger in the upper sediments than in the 10-20 cm depth and increased from large (158 ± 18 nmol CO2 g-1 sediment d.w. h-1 ) to medium and small (192 ± 17 nmol CO2 g-1 h-1 ) lakes. Methane oxidation in the upper sediments was similar in all lakes, while at depth, large lakes had 14- and 74-fold faster oxidation rates (5.1 ± 0.5 nmol CH4 -derived CO2 g-1 h-1 ) than small and medium lakes, respectively. This was attributed to the higher O2 concentration in large lakes due to the more intense wind-induced water turbulence and mixing than in smaller lakes. From a global perspective, the CH4 oxidation potential confirms the key role of thermokarst lakes as an important hotspot for GHG emissions, which increase with the decreasing lake size.


Subject(s)
Greenhouse Gases , Lakes , Methane/analysis , Carbon Dioxide/analysis , Oxidation-Reduction , Water
2.
Environ Sci Technol ; 58(17): 7425-7432, 2024 Apr 30.
Article in English | MEDLINE | ID: mdl-38639036

ABSTRACT

Validating paleo total phosphorus (TP) inference methods over long time scales is essential for understanding historic changes in lake P supply and the processes leading up to the present-day global lake eutrophication crisis. Monitored lake water TP time series have enabled us to identify the drivers of eutrophication over recent decades. However, over longer time scales, the lack of reliable TP inference means our understanding of drivers is speculative. Validation of lake water TP reconstruction, therefore, remains the "ultimate aim" of eutrophication studies. Here, we present the first critical comparison of two fully independent paleo TP inference approaches: the well-established diatom method (DI-TP) and a recently developed sediment geochemical method (SI-TP). Using lake sediment records from a small eutrophic U.K. lake (Crose Mere), we find a statistically significant agreement between the two inferred TP records with greater than 60% shared variance. Both records show identical timings, with a 19th century acceleration in TP concentration and subsequent declines following a peak in 1930. This significant agreement establishes the validity of long-term paleo TP inference for the first time. With this, we can now test assumptions and paradigms that underpin understanding of catchment P sources and pathways over longer time scales.


Subject(s)
Environmental Monitoring , Eutrophication , Geologic Sediments , Lakes , Phosphorus , Phosphorus/analysis , Lakes/chemistry , Geologic Sediments/chemistry , Environmental Monitoring/methods , Diatoms , Water Pollutants, Chemical/analysis
3.
Environ Sci Technol ; 58(25): 11140-11151, 2024 Jun 25.
Article in English | MEDLINE | ID: mdl-38867458

ABSTRACT

Microplastic records from lake cores can reconstruct the plastic pollution history. However, the associations between anthropogenic activities and microplastic accumulation are not well understood. Huguangyan Maar Lake (HML) is a deep-enclosed lake without inlets and outlets, where the sedimentary environment is ideal for preserving a stable and historical microplastic record. Microplastic (size: 10-500 µm) characteristics in the HML core were identified using the Laser Direct Infrared Imaging system. The earliest detectable microplastics appeared unit in 1955 (1.1 items g-1). The microplastic abundance ranged from n.d. to 615.2 items g-1 in 1955-2019 with an average of 134.9 items g-1. The abundance declined slightly during the 1970s and then increased rapidly after China's Reform and Opening Up in 1978. Sixteen polymer types were detectable, with polyethylene and polypropylene dominating, accounting for 23.5 and 23.3% of the total abundance, and the size at 10-100 µm accounted for 80%. Socioeconomic factors dominated the microplastic accumulation based on the random forest modeling, and the contributions of GDP per capita, plastic-related industry yield, and total crop yield were, respectively, 13.9, 35.1, and 9.3% between 1955-2019. The total crop yield contribution further increased by 1.7% after 1978. Coarse sediment particles increased with soil erosion exacerbated microplastics discharging into the sediment.


Subject(s)
Environmental Monitoring , Lakes , Microplastics , China , Microplastics/analysis , Water Pollutants, Chemical/analysis , Plastics , Geologic Sediments/chemistry
4.
Environ Res ; 263(Pt 1): 120028, 2024 Sep 20.
Article in English | MEDLINE | ID: mdl-39307222

ABSTRACT

Bacteria are diverse and play important roles in biogeochemical cycling of aquatic ecosystems, but the global distribution patterns of bacterial communities in lake sediments across different climate zones are still obscure. Here we integrated the high-throughput sequencing data of 750 sediment samples from published literature to investigate the distribution of bacterial communities in different climate zones and the potential driving mechanisms. The obtained results indicated that the diversity and richness of bacterial community were notably higher in temperate and cold zones than those in other climate zones. In addition, the bacterial community composition varied significantly in different climate zones, which further led to changes in bacterial functional groups. Specifically, the relative abundance of nitrogen cycling functional groups in polar zones was notably higher compared to other climate zones. Regression analysis revealed that climate (mean annual precipitation, MAP; and mean annual temperature, MAT), vegetation, and geography together determined the diversity pattern of sediment bacterial community on a global scale. The results of partial least squares path modeling further demonstrated that climate was the most significant factor affecting the composition and diversity of bacterial communities, and MAP was the most important climate factor affecting the composition of bacteria community (R2 = 0.443, P < 0.001). It is worth noting that a strong positive correlation was observed between the abundance of the dominant bacterial group uncultured_f_Anaerolineaceae and the normalized difference vegetation index (NDVI; P < 0.001), suggesting that vegetation could affect bacterial community diversity by influencing dominant bacterial taxa. This study enhances our understanding of the global diversity patterns and biogeography of sediment bacteria.

5.
Environ Geochem Health ; 46(10): 390, 2024 Aug 22.
Article in English | MEDLINE | ID: mdl-39172153

ABSTRACT

In Chinese freshwater lakes, eutrophication often coincides with heavy metal/metalloids (HM/Ms) pollution, yet the coevolution of critical nutrients (P, S, Se) and HM/Ms (Cd, Hg, etc.) remains understudied. To address this gap, we conducted a sedimentary chemistry analysis on a 30 cm-deep core, dating back approximately 200 years, retrieved from Chaohu Lake, China. The age-depth model revealed a gradual increase in deposition rates over time. Notably, the concentrations and enrichment factors (EFs) of most target elements surged in the uppermost ~ 15 cm layer, covering the period from 1953 to 2013, while both the concentrations and EFs in deeper layers remained relatively stable, except for Hg. This trend indicates a significant co-enrichment and near-synchronous increase in the levels and EFs of both nutrients and HM/Ms in the upper sediment layers since the mid-twentieth century. Anthropogenic factors were identified as the primary drivers of the enrichment of P, Se, Cd, Hg, Zn, and Te in the upper core, with their contributions also showing a coupled evolutionary trend over time. Conversely, geological activities governed the enrichment of elements in the lower half of the core. The gradual accumulation of anthropogenic Hg between the - 30 to - 15 cm layers might be attributed to global Hg deposition resulting from the industrial revolution. The ecological risk index (RI) associated with HM/Ms loading has escalated rapidly over the past 50 years, with Cd and Hg posing the greatest threats. Furthermore, the PMF model was applied to specifically quantify source contributions of these elements in the core, with anthropogenic and geogenic factors accounting for ~ 60 and ~ 40%, respectively. A good correlation (r2 = 0.87, p < 0.01) between the PMF and Ti-normalized method was observed, indicating their feasibility and cross-validation in source apportionment. Finally, we highlighted environment impact and health implications of the co-enrichment of nutrients and HM/Ms. This knowledge is crucial for developing strategies to protect freshwater ecosystems from the combined impacts of eutrophication and HM/Ms pollution, thereby promoting water environment and human health.


Subject(s)
Geologic Sediments , Lakes , Metalloids , Metals, Heavy , Water Pollutants, Chemical , Lakes/chemistry , China , Geologic Sediments/chemistry , Metals, Heavy/analysis , Risk Assessment , Water Pollutants, Chemical/analysis , Metalloids/analysis , Environmental Monitoring/methods , Nutrients/analysis , Eutrophication
6.
Environ Monit Assess ; 196(10): 925, 2024 Sep 12.
Article in English | MEDLINE | ID: mdl-39264478

ABSTRACT

This is the first report on high pesticide tolerance displayed by the microbiota isolated from the sediments of two high-altitude lakes, located in the Singalila National Park, Singalila Ridge of the Himalayas. Given the remote location of these lakes, direct exposure to chemical pesticides is highly unlikely. However, the high tolerance to commonly used pesticides exhibited, i.e. up to 250 mg/ml, suggests repeated exposure and contamination of the lakes. Microbial growth in the presence of varying concentrations of the pesticides, namely, emamectin benzoate, thiamethoxam, quinalphos, deltamethrin, spiromesifen, flubendiamide, monocrotophos, fipronil, fenazaquin and phorate, was tested. Results showed resistance to all pesticides except fenazaquin and fipronil, up to 250 mg/ml. For the latter two, tolerance was displayed up to a concentration of 40 mg/ml. Tolerance may potentially result from the transport and deposition of pesticides from nearby locations, particularly the tea plantations of Darjeeling and Eastern Nepal. This may create great ecological risks as these lakes are an important water source for endemic wildlife of this protected area. They also hold great significance to the religious sentiment of the local tribes who worship these lakes as sacred. The study highlights the need for monitoring pesticide contamination in such pristine high-altitude environments and the mechanisms of long-range pollutant transport.


Subject(s)
Altitude , Environmental Monitoring , Lakes , Pesticides , Water Pollutants, Chemical , Lakes/microbiology , Lakes/chemistry , Pesticides/analysis , Water Pollutants, Chemical/analysis , Nepal , Nitriles/toxicity , Microbiota/drug effects , Pyrethrins , Himalayas , Ivermectin/analogs & derivatives
7.
Article in English | MEDLINE | ID: mdl-37115616

ABSTRACT

A novel sulphate-reducing bacterium, strain SYKT, was isolated from a xenic culture of an anaerobic protist obtained from a sulphidogenic sediment of the saline Lake Hiruga in Fukui, Japan. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that SYKT clustered with the members of the genus Pseudodesulfovibrio. The closest relative of strain SYKT was Pseudodesulfovibrio sediminis SF6T, with 16S rRNA gene sequence identity of 97.43 %. Digital DNA-DNA hybridisation and average nucleotide identity values between SYKT and species of the genus Pseudodesulfovibrio fell below the respective thresholds for species delineation, indicating that SYKT represents a novel species of the genus Pseudodesulfovibrio. Cells measured 1.7-3.7×0.2-0.5 µm in size and were Gram-stain-negative, obligately anaerobic, motile by means of a single polar flagellum and had a curved rod or sigmoid shape. Cell growth was observed under saline conditions from pH 6.0 to 9.5 (optimum pH 8.0-9.0) and at a temperature of 10-30 °C (optimum 25 °C). SYKT used lactate, pyruvate, fumarate, formate and H2 as electron donors. It used sulphate, sulphite, thiosulphate and sulphur as terminal electron acceptors. Pyruvate and fumarate were fermented. Major cellular fatty acids were anteiso-C15 : 0, C16 : 0, anteiso-C17 : 1ω9c, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The DNA G+C content of SYKT was 49.4 mol%. On the basis of the the genetic and phenotypic features, SYKT was determined to represent a novel species of the genus Pseudodesulfovibrio for which the name Pseudodesulfovibrio nedwellii sp. nov. is proposed with type strain SYKT (=DSM 114958T=JCM 35746T).


Subject(s)
DNA, Bacterial , Fatty Acids , Fatty Acids/chemistry , Geologic Sediments/microbiology , Sulfates/metabolism , Phylogeny , RNA, Ribosomal, 16S/genetics , Anaerobiosis , DNA, Bacterial/genetics , Base Composition , Bacterial Typing Techniques , Sequence Analysis, DNA , Bacteria/genetics , Desulfovibrionaceae , Pyruvates , Phospholipids/chemistry
8.
Article in English | MEDLINE | ID: mdl-37233727

ABSTRACT

A taxonomic identification using polyphasic approach was performed on strain TH16-21T, which was isolated from the interfacial sediment of Taihu Lake, PR China. Strain TH16-21T was Gram-stain-negative, aerobic, rod-shaped and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene and genomic sequences indicated that strain TH16-21T was classified within the genus of Flavobacterium. The 16S rRNA gene sequence of strain TH16-21T showed the highest similarity to Flavobacterium cheniae NJ-26T (98.9 %). The average nucleotide identity and digital DNA-DNA hybridization values between strain TH16-21T and F. cheniae NJ-26T were 91.2 and 45.9 %, respectively. The respiratory quinone was menaquinone 6. The major cellular fatty acids (>10 %) comprised iso-C15 : 0, iso-C16 : 0, iso-C15 : 1 G and iso-C16 : 0 3-OH. The genomic DNA G+C content was 32.2 mol%. Phosphatidylethanolamine, six amino lipids and three phospholipids were the main polar lipids. Based on the phenotypic features and phylogenetic position, a novel species with the name Flavobacterium lacisediminis sp. nov. is proposed. The type strain is TH16-21T (=MCCC 1K04592T=KACC 22896T).


Subject(s)
Fatty Acids , Lakes , Fatty Acids/chemistry , Lakes/microbiology , Flavobacterium , Phylogeny , RNA, Ribosomal, 16S/genetics , DNA, Bacterial/genetics , Sequence Analysis, DNA , Base Composition , Bacterial Typing Techniques , Vitamin K 2
9.
Environ Sci Technol ; 2023 Jan 12.
Article in English | MEDLINE | ID: mdl-36633549

ABSTRACT

Increased periods of bottom water anoxia in deep temperate lakes due to decreasing frequency and depth of water column mixing in a warming climate may result in the reductive dissolution of iron minerals and increased flux of nutrients from the sediment into the water column. Here, we assessed the sediment properties and reactivities under depleted oxygen concentrations of Lake Tahoe, a deep ultraoligotrophic lake in the Sierra Nevada mountain range. Using whole-core incubation experiments, we found that a decrease in dissolved oxygen concentration in the top 2 cm of the sediment resulted in an extension of the microbial iron reduction zone from below 4.5 to below 1.5 cm depth. Concentrations of reactive iron generally decreased with sediment depth, and microbial iron reduction seemingly ceased as concentrations of Fe(II) approximated concentrations of reactive iron. These findings suggest that microorganisms preferentially utilized reactive iron and/or iron minerals became less reactive due to mineral transformation and surface passivation. The estimated release of iron mineral-associated phosphorus is not expected to change Lake Tahoe's trophic state but will likely contribute to increased phytoplankton productivity if mixed into surface waters.

10.
Environ Res ; 227: 115828, 2023 06 15.
Article in English | MEDLINE | ID: mdl-37011792

ABSTRACT

Sediment microbes are crucial for maintaining biogeochemical cycles in aquatic ecosystems, yet the influence of sediment geophysical structure on microbial communities remains unclear. In this study, we collected sediment cores from a nascent reservoir in its initial stage of deposition and utilized the multifractal model to comprehensively characterize the heterogeneity of sediment grain size and pore space. Our results demonstrate that both environmental physiochemistry and microbial community structures varied significantly with depth, with the grain size distribution (GSD) being the key driver of sediment microbial diversity, as revealed by the partial least squares path model (PLS-PM) method. GSD can potentially impact microbial communities and biomass by controlling pore space and organic matter. Overall, this study represents the first attempt to apply soil multifractal models into the integrated description of physical structure in sediment. Our findings provide valuable insights into the vertical distribution of microbial communities.


Subject(s)
Lakes , Microbiota , Bacteria , Geologic Sediments , Water Microbiology
11.
Ecotoxicol Environ Saf ; 249: 114445, 2023 Jan 01.
Article in English | MEDLINE | ID: mdl-38321664

ABSTRACT

Glyphosate is a widely used herbicide worldwide and its prevalent presence in aquatic ecosystems poses a threat to living organisms. This study evaluated potential ecological risk of glyphosate to sediment-dwelling organisms and assessed the probable effect of glyphosate on structure and predicated function of sediment-attached bacterial communities from a large shallow lake in northern China based on 16S rRNA high-throughput sequencing. Results suggested that glyphosate showed a medium to high concentration (up to 8.63 mg/kg) and chronic risk to sediment-dwelling organisms (10% samples exhibiting medium to high risk quotient), especially in sites nearby farmland and residential areas in August. Bacterial community identification based on 16S rRNA sequence indicated some species of dominant phylum Proteobacteria and Campilobacterota (e.g., Steroidobacteraceae, Thiobacillus, Gallionellaceae, Sulfurimonadaceae) were stimulated while some species of dominant phylum Actinobacteriota, Acidobacteriota and Firmicutes (e.g., Nocardioidaceae, Microtrichales, Vicinamibacteraceae, Paenisporosarcina) were inhibited by glyphosate accumulation. The stimulating species were related to sulfur-oxidizing, sulfate-, iron-, or nitrate-reducing bacteria; The inhibiting species were related to plant bacterial endophytes, polyphosphate-accumulating organisms (PAOs) and denitrifers. Correspondingly, promoted bacterial metabolic functions of "sulfite respiration", "nitrogen respiration", "aromatic compound degradation" and "nitrification" but suppressed "cellulolysis", "manganese oxidation", "anoxygenic photoautotrophy S oxidizing" and "nitrate denitrification" were predicated on functional annotation of prokaryotic taxa. Although these results could only partly suggest the impacts of glyphosate on the bacterial communities due to the lack of actual results from control experiments, the identified Steroidobacteraceae could be thought as a bioindicator in the future mechanism study for the ecological effect and bioremediation of glyphosate. This work intends to arise the concern about the depletion of biodiversity and bacterial metabolic functions with contribution of glyphosate in part in eutrophic lakes.


Subject(s)
Ecosystem , Lakes , Lakes/chemistry , RNA, Ribosomal, 16S/genetics , Glyphosate , Nitrates/metabolism , Bacteria/metabolism , China , Geologic Sediments/chemistry
12.
J Environ Manage ; 331: 117199, 2023 Apr 01.
Article in English | MEDLINE | ID: mdl-36638721

ABSTRACT

In the frame of the global phosphorus (P) crisis and ongoing eutrophication issues in the environmental sector, lake sediment can be considered as an alternative P source after its removal from eutrophic lakes. However, high water contents make sediment dewatering a crucial step towards the efficient reusability of remaining solids. The application of polymeric substances facilitates solid-liquid separation by flocculation of suspended particles. To lower the environmental risk of contamination with toxic, non-biodegradable monomeric residues during and after the application of synthetic polyacrylamide(PAM)-based polymers, switching to natural polymeric substances (biopolymers), e.g., starch- or chitosan-based, is increasingly emphasized. The dewatering performance of four conventional PAM-based polymers was compared to two starch- and one chitosan-based biopolymer. Laboratory experiments were conducted to determine the dewatering rate, floc size and strength, and reject water quality. Biopolymers generally caused the formation of smaller but less shear-sensitive flocs, and lower P levels in the reject water compared to synthetic polymers. Dewatering performance was correlated to the most important functioning influencing polymer-specific properties intrinsic viscosity (polymer extension) and surface charge density (CD). Due to the high CD and low intrinsic viscosity of the biopolymers, electrostatic patch flocculation seems to be the favored flocculation mechanism, while for synthetic polymers bridging seems to be dominating. Solid-liquid separation technologies should be adjusted to the resulting floc size and structure, while surface CD and intrinsic viscosity are important properties for the choice of biopolymer. Overall, biopolymers can function as a more environmentally friendly alternative to synthetic products for lake sediment dewatering accompanied by the potential for P recovery.


Subject(s)
Chitosan , Lakes , Flocculation , Biopolymers/chemistry , Polymers , Starch , Sewage/chemistry , Waste Disposal, Fluid/methods
13.
Environ Geochem Health ; 45(6): 3985-4006, 2023 Jun.
Article in English | MEDLINE | ID: mdl-36631577

ABSTRACT

This study presents the distribution of persistent organic pollutants (POPs), polycyclic aromatic hydrocarbons (PAHs) and heavy metals (HMs) in the sediments from four dams and two ponds in the Çanakkale city, Türkiye. The total concentration varied from 41.47 to 145.45 ng/g d.w. for PAHs; 1.40-14.96 ng/g d.w. for organochlorine pesticides (OCPs) and 0.13-3.31 ng/g d.w. for polychlorinated biphenyls (PCBs). The total polychlorinated dibenzo-p-dioxins/furans (∑PCDD/Fs) concentrations varied between 7.35 and 63.46 pg/g d.w. The HM distribution in sediments ranged from 9.41 to 21.13 mg/kg d.w. for As; 0.20-0.39 mg/kg d.w. for Cd; 19.4-281.68 mg/kg d.w. for Cr; 23.50-118.25 mg/kg d.w. for Pb and 118.9-374.82 mg/kg d.w. for Zn. This paper also elucidates possible sources of POP and HMs in sediment by using diagnostic ratios. The calculated ratios were shown that anthropogenic input is the source of these pollutants in sediments. Principal component analysis showed that the low molecular weight of POPs is considerably related and correlated, while high molecular weight pollutants have made another group and highly correlated with each other. The results indicated that anthropogenic pollution is mainly related to atmospheric input. Anthropogenic pollutants are more apparent at Atikhisar and Bakacak dams close to urbanized locations. Rather than the anthropogenic impact, based on the measured data interpretation, the global climate change effect was seen in Bakacak dam. The overall concentration of all pollutants revealed that Atikhisar and Bakacak sediments are high-level polluted areas according to several types of sediment guidelines.


Subject(s)
Environmental Pollutants , Metals, Heavy , Polychlorinated Biphenyls , Polycyclic Aromatic Hydrocarbons , Water Pollutants, Chemical , Persistent Organic Pollutants , Lakes/analysis , Water Pollutants, Chemical/analysis , Geologic Sediments/analysis , Environmental Monitoring/methods , Metals, Heavy/analysis , Polychlorinated Biphenyls/analysis , Environmental Pollutants/analysis , Polycyclic Aromatic Hydrocarbons/analysis
14.
Environ Geochem Health ; 45(4): 1173-1181, 2023 Apr.
Article in English | MEDLINE | ID: mdl-35318556

ABSTRACT

Chronologies generated from core profiles to apply dates to environmental changes commonly use the measurement of the activity of radionuclides deposited and stratified with physical environmental material. The most commonly reported nuclide to define chronologies covering the last 150 years is Pb-210, for which accepted data processing methodologies in the literature have focussed on the constant rate of supply (CRS) model and the more recently published Bayesian Plum model. This short communication describes a validation approach using defined sediment layers referred to as 'varve' counting, which provide known points of reference to account for uncertainty between generated dates from each model using published Pb-210 measurements. A significant improvement in the chronologies was observed when applying reference date corrections to the models. This was shown to be essential in providing confidence in reported datasets and accuracy of predicted chronologies, which will better inform the interpretation of environmental change, e.g. sedimentation rates, climate change, pollution pathways and land degradation. Generated chronologies from both the CRS and Plum methods showed good agreement with the established varve dates (typically < 4-year difference).


Subject(s)
Geologic Sediments , Lead Radioisotopes , Lead Radioisotopes/analysis , Bayes Theorem , Environmental Monitoring/methods
15.
New Phytol ; 235(2): 391-401, 2022 07.
Article in English | MEDLINE | ID: mdl-35306671

ABSTRACT

The rapid development of ancient DNA analysis in the last decades has induced a paradigm shift in ecology and evolution. Driven by a combination of breakthroughs in DNA isolation techniques, high-throughput sequencing, and bioinformatics, ancient genome-scale data for a rapidly growing variety of taxa are now available, allowing researchers to directly observe demographic and evolutionary processes over time. However, the vast majority of paleogenomic studies still focus on human or animal remains. In this article, we make the case for a vast untapped resource of ancient plant material that is ideally suited for paleogenomic analyses: plant remains, such as needles, leaves, wood, seeds, or fruits, that are deposited in natural archives, such as lake sediments, permafrost, or even ice caves. Such plant remains are commonly found in large numbers and in stratigraphic sequence through time and have so far been used primarily to reconstruct past local species presences and abundances. However, they are also unique repositories of genetic information with the potential to revolutionize the fields of ecology and evolution by directly studying microevolutionary processes over time. Here, we give an overview of the current state-of-the-art, address important challenges, and highlight new research avenues to inspire future research.


Subject(s)
DNA, Ancient , Permafrost , Animals , DNA, Plant/genetics , Lakes , Plants/genetics
16.
Article in English | MEDLINE | ID: mdl-35696264

ABSTRACT

A novel bacterium, designated NAS39T, was isolated from the interfacial sediment of Taihu Lake in PR China and its taxonomic position was investigated by using a polyphasic approach. Cells of the isolate were Gram-stain-negative, aerobic, non-motile, catalase-positive, yellow and rod-shaped. Phylogenetic analyses based on 16S rRNA gene sequences supported that strain NAS39T formed a cluster within the genus Flavobacterium, and was most closely related to Flavobacterium laiguense LB2P30T (98.4 %), followed by Flavobacterium tiangeerense 0563T (97.4 %). The average nucleotide identity values between strain NAS39T and F. laiguense LB2P30T and F. tiangeerense 0563T were 82.5 and 75.3 %, respectively. The digital DNA-DNA hybridization values between strain NAS39T and F. laiguense LB2P30T and F. tiangeerense 0563T were 40.9 and 18.6 %, respectively. The genomic DNA G+C content was 34.1 mol%. The major respiratory quinone was menaquinone-6. The dominant cellular fatty acids were iso-C15 : 0 and summed feature 3 comprising C16 : 1 ω7c/C16 : 1 ω6c. The polar lipids comprised phosphatidyl ethanolamine, two amino lipids, three amino phospholipids and two unidentified lipids. Based on the phenotypic, chemotaxonomic, genotypic and phylogenetic characteristics, strain NAS39T (=MCCC 1K06094T=KACC 22328T) represents a novel species of the genus Flavobacterium, for which the name Flavobacterium taihuense sp. nov. is proposed.


Subject(s)
Flavobacterium , Lakes , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Lakes/analysis , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Vitamin K 2/analysis
17.
J Asian Nat Prod Res ; 24(11): 1058-1063, 2022 Nov.
Article in English | MEDLINE | ID: mdl-35142242

ABSTRACT

Two previously undescribed cyclopentenone metabolites, (S)-2-(3-acetylamino-2-methyl)propyl-3-butyl-2-cyclopenten-1-one (1) and (S)-2-(3-acetylamino-2-ethyl)propyl-3-butyl-2-cyclopenten-1-one (2), were isolated from the fermentation broth of the strain Streptomyces sp. HU119. The structures of 1 and 2 were determined by the comprehensive spectroscopic analysis, including 1 D, 2 D NMR, MS spectral analysis and the comparison with data from the literature. The absolute configurations were elucidated by experimental and calculated optical rotations (OR). Compounds 1 and 2 displayed weak cytotoxic activity.


Subject(s)
Streptomyces , Streptomyces/chemistry , Molecular Structure , Cyclopentanes/pharmacology , Fermentation
18.
Environ Sci Technol ; 55(12): 7949-7958, 2021 06 15.
Article in English | MEDLINE | ID: mdl-34061508

ABSTRACT

Microplastic research, initially focusing on marine environments, left freshwater ecosystems largely unexplored. Freshwaters are also vulnerable to microplastics and are likely the largest microplastic supplier to the ocean. However, microplastic sources, transport pathways, and fluxes at the catchment level remain to be quantified, compromising efficient actions toward mitigation and remediation. Here we show that 70-90% of microplastics reaching Norway's largest lake, originating primarily from urban waste mismanagement and sludge application on crops, continue their journey toward the ocean without being buried. Indeed, our microplastic budget for the catchment shows that out of the 35.9 tons (7.4-119.4 t) of microplastics annually released into the lake, only 3.5 tons (1.3-8.8 t) are settling to the lake bottom. The spatial and vertical microplastic distribution and diversity in lake sediments, the socio-economic modeling of plastic fluxes and spatial information on land use and potential plastic sources all point toward urban and agricultural areas as emission hotspots of increasing importance. We conclude that the degree to which lake sediments represent a net microplastic sink is likely influenced by the nature of microplastics the lake receives, and ultimately on their origin.


Subject(s)
Microplastics , Water Pollutants, Chemical , Ecosystem , Environmental Monitoring , Geologic Sediments , Lakes , Plastics , Sewage , Water Pollutants, Chemical/analysis
19.
Environ Sci Technol ; 55(5): 3408-3418, 2021 03 02.
Article in English | MEDLINE | ID: mdl-33587626

ABSTRACT

Cyanobacterial blooms that form in response to climate warming and nutrient enrichment in freshwater lakes have become a global environmental challenge. Historical legacy effects and the mechanisms underlying cyanobacterial community succession are not well understood, especially for plateau lakes that are important global freshwater resources. This study investigated the temporal dynamics of cyanobacterial communities over centuries in response to nutrient enrichment and climate warming in low-latitude plateau lakes using high-throughput DNA sequencing of sedimentary DNA combined with traditional paleolimnological analyses. Our results confirmed that nutrients and climate warming drive shifts in cyanobacterial communities over time. Cyanobacterial community turnover was pronounced with regime shifts toward new ecological states, occurring after exceeding a tipping point of aquatic total phosphorus (TP). The inferred species interactions, niche differentiation, and identity of keystone taxa significantly changed after crossing the aquatic TP ecological threshold, as demonstrated by network analysis of cyanobacterial taxa. Further, the contribution of aquatic TP to cyanobacterial community dynamics was greater than that of air temperature when lakes were in an oligotrophic state. In contrast, as the aquatic TP threshold was exceeded, the contribution to community dynamics by air temperature increased and potentially surpassed that of aquatic TP. Overall, these results provide new evidence for how past nutrient levels in lacustrine ecosystems influence contemporary cyanobacterial community responses to global warming in low-latitude plateau lakes.


Subject(s)
Cyanobacteria , Lakes , Climate , Ecosystem , Nutrients
20.
Environ Res ; 201: 111525, 2021 10.
Article in English | MEDLINE | ID: mdl-34186078

ABSTRACT

The Mechanisms driving phosphorus (P) release in sediment of shallow lakes is essential for managing harmful algal blooms (HABs). Accordingly, this study conducted field monitoring of labile P, iron (Fe), sulfur (S), and dissolved manganese (Mn) in different biomass of algae in Lake Taihu. The in-situ technique of ZrO-Chelex-AgI (ZrO-CA) diffusive gradients in thin-films (DGT) and high-resolution dialysis sampler (high resolution-Peeper (HR-Peeper)) were used to measure labile P, Fe, S, and dissolved Mn, as well as their apparent diffusion fluxes at the sediment-water interface (SWI). In addition, the distribution of iron-reducing bacteria (IRB) and sulfate-reducing bacteria (SRB) in sediments was also detected. Results showed that high HABs biomass promoted the reduction of sulfate into labile S, however, IRB is the dominant species. Thus, labile Fe concentrations greatly exceeded labile S concentrations across all sites, indicating that microbial iron reduction (MIR) is the principal pathway for ferric iron reduction. Furthermore, the simple relationship analysis revealed the principal influence P migration and transformation is the Fe-P in high algal biomass sites, while Fe and Mn redox reactions did not significantly influence labile P mobilization in low algal areas.


Subject(s)
Lakes , Water Pollutants, Chemical , Environmental Monitoring , Geologic Sediments , Harmful Algal Bloom , Phosphorus/analysis , Water Pollutants, Chemical/analysis
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