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1.
PLoS Genet ; 16(8): e1008992, 2020 08.
Article in English | MEDLINE | ID: mdl-32797092

ABSTRACT

Bacterial virulence factors facilitate host colonization and set the stage for the evolution of parasitic and mutualistic interactions. The Sodalis-allied clade of bacteria exhibit striking diversity in the range of both plant and animal feeding insects they inhabit, suggesting the appropriation of universal molecular mechanisms that facilitate establishment. Here, we report on the infection of the tsetse fly by free-living Sodalis praecaptivus, a close relative of many Sodalis-allied symbionts. Key genes involved in quorum sensing, including the homoserine lactone synthase (ypeI) and response regulators (yenR and ypeR) are integral for the benign colonization of S. praecaptivus. Mutants lacking ypeI, yenR and ypeR compromised tsetse survival as a consequence of their inability to repress virulence. Genes under quorum sensing, including homologs of the binary insecticidal toxin PirAB and a putative symbiosis-promoting factor CpmAJ, demonstrated negative and positive impacts, respectively, on tsetse survival. Taken together with results obtained from experiments involving weevils, this work shows that quorum sensing virulence suppression plays an integral role in facilitating the establishment of Sodalis-allied symbionts in diverse insect hosts. This knowledge contributes to the understanding of the early evolutionary steps involved in the formation of insect-bacterial symbiosis. Further, despite having no established history of interaction with tsetse, S. praecaptivus can infect reproductive tissues, enabling vertical transmission through adenotrophic viviparity within a single host generation. This creates an option for the use of S. praecaptivus in the biocontrol of insect disease vectors via paratransgenesis.


Subject(s)
Quorum Sensing/genetics , Tsetse Flies/genetics , Virulence Factors/genetics , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/genetics , Animals , Enterobacteriaceae/genetics , Enterobacteriaceae/pathogenicity , Humans , Insect Vectors/genetics , Insect Vectors/microbiology , Insecta/genetics , Symbiosis/genetics , Tsetse Flies/microbiology
2.
Mar Drugs ; 20(1)2022 Jan 14.
Article in English | MEDLINE | ID: mdl-35049927

ABSTRACT

Marine myxobacteria present a virtually unexploited reservoir for the discovery of natural products with diverse biological functions and novel chemical scaffolds. We report here the isolation and structure elucidation of eight new deoxyenhygrolides (1-8) from the marine myxobacterium Plesiocystis pacifica DSM 14875T. The herein described deoxyenhygrolides C-J (1-8) feature a butenolide core with an ethyl residue at C-3 of the γ-lactone in contrast to the previously described derivatives, deoxyenhygrolides A and B, which feature an isobutyl residue at this position. The butenolide core is 2,4-substituted with a benzyl (1, 2 and 7), benzoyl (3 and 4) or benzyl alcohol (5, 6 and 8) moiety in the 2-position and a benzylidene (1-6) or benzylic hemiketal (7 and 8) in the 4-position. The description of these new deoxyenhygrolide derivatives, alongside genomic in silico investigation regarding putative biosynthetic genes, provides some new puzzle pieces on how this natural product class might be formed by marine myxobacteria.


Subject(s)
4-Butyrolactone/analogs & derivatives , Myxococcales , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , Animals , Aquatic Organisms
3.
J Am Chem Soc ; 143(42): 17708-17715, 2021 10 27.
Article in English | MEDLINE | ID: mdl-34644070

ABSTRACT

The 3(2H)-furanone unit is observed in many biologically active natural products, as represented by the antifungal medication griseofulvin. Setosusin (1) is a fungal meroditerpenoid featuring a unique spiro-fused 3(2H)-furanone moiety; however, the biosynthetic basis for spirofuranone formation has not been investigated since its isolation. Therefore, in this study we identified the biosynthetic gene cluster of 1 in the fungus Aspergillus duricaulis CBS 481.65 and elucidated its biosynthetic pathway by heterologous reconstitution of related enzyme activities in Aspergillus oryzae. To understand the reaction mechanism to afford spirofuranone, we subsequently performed a series of in vivo and in vitro isotope-incorporation experiments and theoretical calculations. The results indicated that SetF, the cytochrome P450 enzyme that is critical for spirofuranone synthesis, not only performs the epoxidation of the polyketide portion of the substrate but also facilitates the protonation-initiated structural rearrangement to yield 1. Finally, a mutagenesis experiment using SetF identified Lys303 as one of the potential catalytic residues that are important for spirofuranone synthesis.


Subject(s)
4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/biosynthesis , Aspergillus/metabolism , Diterpenes/metabolism , Spiro Compounds/metabolism , Aspergillus/genetics , Cytochrome P-450 Enzyme System/genetics , Cytochrome P-450 Enzyme System/metabolism , Fungal Proteins/genetics , Fungal Proteins/metabolism , Multigene Family , Mutation
4.
Proc Natl Acad Sci U S A ; 115(29): 7587-7592, 2018 07 17.
Article in English | MEDLINE | ID: mdl-29967162

ABSTRACT

Many species of Proteobacteria produce acyl-homoserine lactone (AHL) compounds as quorum-sensing (QS) signals for cell density-dependent gene regulation. Most known AHL synthases, LuxI-type enzymes, produce fatty AHLs, and the fatty acid moiety is derived from an acyl-acyl carrier protein (ACP) intermediate in fatty acid biosynthesis. Recently, a class of LuxI homologs has been shown to use CoA-linked aromatic or amino acid substrates for AHL synthesis. By using an informatics approach, we found the CoA class of LuxI homologs exists primarily in α-Proteobacteria. The genome of Prosthecomicrobium hirschii, a dimorphic prosthecate bacterium, possesses a luxI-like AHL synthase gene that we predicted to encode a CoA-utilizing enzyme. We show the P. hirschii LuxI homolog catalyzes synthesis of phenylacetyl-homoserine lactone (PA-HSL). Our experiments show P. hirschii obtains phenylacetate from its environment and uses a CoA ligase to produce the phenylacetyl-CoA substrate for the LuxI homolog. By using an AHL degrading enzyme, we showed that PA-HSL controls aggregation, biofilm formation, and pigment production in P. hirschii These findings advance a limited understanding of the CoA-dependent AHL synthases. We describe how to identify putative members of the class, we describe a signal synthesized by using an environmental aromatic acid, and we identify phenotypes controlled by the aryl-HSL.


Subject(s)
4-Butyrolactone/analogs & derivatives , Alphaproteobacteria/physiology , Bacterial Proteins , Biofilms/growth & development , Carrier Proteins , Quorum Sensing/physiology , Signal Transduction/physiology , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Carrier Proteins/genetics , Carrier Proteins/metabolism
5.
Bull Exp Biol Med ; 171(6): 741-744, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34705176

ABSTRACT

We studied the effect of early accumulation of N-3-oxo-dodecanoyl-homoserine lactone on the suppression of Pseudomonas aeruginosa reproduction, biofilm formation, and elastase activity. N-3-oxo-dodecanoyl-homoserine lactone in various concentrations was added to the P. aeruginosa culture, and changes in the concentration of bacteria and the formation of biofilms were studied in dynamics. N-3-oxo-dodecanoyl-homoserine lactone in a concentration of 25 µM, decelerated proliferation of bacterial cells during the first 6 h of culturing (p<0.05) and stimulated biofilm formation after 18 h of culturing. Elastase activity of P. aeruginosa increased significantly after addition of N-3-oxo-dodecanoyl-homoserine lactone in a concentration of 0.75 µM.


Subject(s)
4-Butyrolactone/analogs & derivatives , Bacterial Proteins/metabolism , Biofilms/drug effects , Homoserine/analogs & derivatives , Pancreatic Elastase/metabolism , Pseudomonas aeruginosa/drug effects , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/pharmacology , Bacterial Load , Biofilms/growth & development , Culture Media/chemistry , Culture Media/pharmacology , Dose-Response Relationship, Drug , Homoserine/biosynthesis , Homoserine/pharmacology , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/growth & development , Quorum Sensing/physiology
6.
Metab Eng ; 61: 427-436, 2020 09.
Article in English | MEDLINE | ID: mdl-31404648

ABSTRACT

Lactone flavors with fruity, milky, coconut, and other aromas are widely used in the food and fragrance industries. Lactones are produced by chemical synthesis or by biotransformation of plant-sourced hydroxy fatty acids. We established a novel method to produce flavor lactones from abundant non-hydroxylated fatty acids using yeast cell factories. Oleaginous yeast Yarrowia lipolytica was engineered to perform hydroxylation of fatty acids and chain-shortening via ß-oxidation to preferentially twelve or ten carbons. The strains could produce γ-dodecalactone from oleic acid and δ-decalactone from linoleic acid. Through metabolic engineering, the titer was improved 4-fold, and the final strain produced 282 mg/L γ-dodecalactone in a fed-batch bioreactor. The study paves the way for the production of lactones by fermentation of abundant fatty feedstocks.


Subject(s)
4-Butyrolactone/analogs & derivatives , Batch Cell Culture Techniques , Linoleic Acid/metabolism , Oleic Acid/metabolism , Yarrowia , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/genetics , Yarrowia/genetics , Yarrowia/metabolism
7.
Molecules ; 25(13)2020 Jul 02.
Article in English | MEDLINE | ID: mdl-32630666

ABSTRACT

Microbial conversion of oleic acid (1) to form value-added industrial products has gained increasing scientific and economic interest. So far, the production of natural lactones with flavor and fragrance properties from fatty acids by non-genetically modified organisms (non-GMO) involves whole cells of bacteria catalyzing the hydration of unsaturated fatty acids as well as yeast strains responsible for further ß-oxidation processes. Development of a non-GMO process, involving a sole strain possessing both enzymatic activities, significantly lowers the costs of the process and constitutes a better method from the customers' point of view regarding biosafety issues. Twenty bacteria from the genus of Bacillus, Comamonas, Dietzia, Gordonia, Micrococcus, Pseudomonas, Rhodococcus and Streptomyces were screened for oxidative functionalization of oleic acid (1). Micrococcus luteus PCM525 was selected as the sole strain catalyzing the one-pot transformation of oleic acid (1) into natural valuable peach and strawberry-flavored γ-dodecalactone (6) used in the food, beverage, cosmetics and pharmaceutical industries. Based on the identified products formed during the process of biotransformation, we clearly established a pathway showing that oleic acid (1) is hydrated to 10-hydroxystearic acid (2), then oxidized to 10-ketostearic acid (3), giving 4-ketolauric acid (4) after three cycles of ß-oxidation, which is subsequently reduced and cyclized to γ-dodecalactone (6) (Scheme 1). Moreover, three other strains (Rhodococcus erythropolis DSM44534, Rhodococcus ruber PCM2166, Dietzia sp. DSM44016), with high concomitant activities of oleate hydratase and alcohol dehydrogenase, were identified as efficient producers of 10-ketostearic acid (3), which can be used in lubricant and detergent formulations. Considering the prevalence of γ-dodecalactone (6) and 10-ketostearic acid (3) applications and the economic benefits of sustainable management, microbial bioconversion of oleic acid (1) is an undeniably attractive approach.


Subject(s)
4-Butyrolactone/analogs & derivatives , Micrococcus luteus/metabolism , Oleic Acid/metabolism , Stearic Acids/metabolism , 4-Butyrolactone/biosynthesis , Carbon/metabolism , Culture Media/chemistry , Culture Media/pharmacology , Gas Chromatography-Mass Spectrometry , Industrial Microbiology/methods , Linoleic Acid/metabolism , Micrococcus luteus/drug effects , Micrococcus luteus/growth & development , Oleic Acid/pharmacokinetics , Oxidation-Reduction , Surface-Active Agents/chemistry , Surface-Active Agents/metabolism , alpha-Linolenic Acid/metabolism
8.
Angew Chem Int Ed Engl ; 59(14): 5607-5610, 2020 03 27.
Article in English | MEDLINE | ID: mdl-31880848

ABSTRACT

Butenolides are well-known signaling molecules in Gram-positive bacteria. Here, we describe a novel class of butenolides isolated from a Gram-negative Pseudomonas strain, the styrolides. Structure elucidation was aided by the total synthesis of styrolide A. Transposon mutagenesis enabled us to identify the styrolide biosynthetic gene cluster, and by using a homology search, we discovered the related and previously unknown acaterin biosynthetic gene cluster in another Pseudomonas species. Mutagenesis, heterologous expression, and identification of key shunt and intermediate products were crucial to propose a biosynthetic pathway for both Pseudomonas-derived butenolides. Comparative transcriptomics suggests a link between styrolide formation and the regulatory networks of the bacterium.


Subject(s)
4-Butyrolactone/analogs & derivatives , Pseudomonas/chemistry , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , DNA Transposable Elements/genetics , Multigene Family , Mutagenesis , Pseudomonas/genetics , Pseudomonas/isolation & purification , Soil Microbiology
9.
Angew Chem Int Ed Engl ; 59(51): 23122-23126, 2020 12 14.
Article in English | MEDLINE | ID: mdl-32588959

ABSTRACT

Genome mining of one of the protective symbionts (Burkholderia gladioli) of the invasive beetle Lagria villosa revealed a cryptic gene cluster that codes for the biosynthesis of a novel antifungal polyketide with a glutarimide pharmacophore. Targeted gene inactivation, metabolic profiling, and bioassays led to the discovery of the gladiofungins as previously-overlooked components of the antimicrobial armory of the beetle symbiont, which are highly active against the entomopathogenic fungus Purpureocillium lilacinum. By mutational analyses, isotope labeling, and computational analyses of the modular polyketide synthase, we found that the rare butenolide moiety of gladiofungins derives from an unprecedented polyketide chain termination reaction involving a glycerol-derived C3 building block. The key role of an A-factor synthase (AfsA)-like offloading domain was corroborated by CRISPR-Cas-mediated gene editing, which facilitated precise excision within a PKS domain.


Subject(s)
4-Butyrolactone/analogs & derivatives , Antifungal Agents/pharmacology , Burkholderia/chemistry , Hypocreales/drug effects , Polyketides/pharmacology , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , 4-Butyrolactone/pharmacology , Animals , Antifungal Agents/chemistry , Antifungal Agents/metabolism , Burkholderia/genetics , Burkholderia/metabolism , Coleoptera , Microbial Sensitivity Tests , Polyketides/chemistry , Polyketides/metabolism
10.
Fungal Genet Biol ; 125: 45-52, 2019 04.
Article in English | MEDLINE | ID: mdl-30703558

ABSTRACT

Besides enzymatic conversions, many eukaryotic metabolic pathways also involve transport proteins that shuttle molecules between subcellular compartments, or into the extracellular space. Fungal itaconate production involves two such transport steps, involving an itaconate transport protein (Itp), and a mitochondrial tricarboxylate transporter (Mtt). The filamentous ascomycete Aspergillus terreus and the unicellular basidiomycete Ustilago maydis both produce itaconate, but do so via very different molecular pathways, and under very different cultivation conditions. In contrast, the transport proteins of these two strains are assumed to have a similar function. This study aims to investigate the roles of both the extracellular and mitochondrial transporters from these two organisms by expressing them in the corresponding U. maydis knockouts and monitoring the extracellular product concentrations. Both transporters from A. terreus complemented their corresponding U. maydis knockouts in mediating itaconate production. Surprisingly, complementation with At_MfsA from A. terreus led to a partial switch from itaconate to (S)-2-hydroxyparaconate secretion. Apparently, the export protein from A. terreus has a higher affinity for (S)-2-hydroxyparaconate than for itaconate, even though this species is classically regarded as an itaconate producer. Complementation with At_MttA increased itaconate production by 2.3-fold compared to complementation with Um_Mtt1, indicating that the mitochondrial carrier from A. terreus supports a higher metabolic flux of itaconic acid precursors than its U. maydis counterpart. The biochemical implications of these differences are discussed in the context of the biotechnological application in U. maydis and A. terreus for the production of itaconate and (S)-2-hydroxyparaconate.


Subject(s)
Aspergillus/genetics , Carrier Proteins/genetics , Fungal Proteins/genetics , Ustilago/genetics , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/genetics , Aspergillus/metabolism , Carrier Proteins/metabolism , Cloning, Molecular , Gene Expression Regulation, Fungal , Gene Knockout Techniques , Metabolic Networks and Pathways/genetics , Mitochondria/genetics , Succinates/metabolism , Ustilago/metabolism
11.
Microb Cell Fact ; 17(1): 9, 2018 Jan 22.
Article in English | MEDLINE | ID: mdl-29357848

ABSTRACT

BACKGROUND: Pseudomonas chlororaphis HT66 isolated from the rice rhizosphere is an important plant growth-promoting rhizobacteria that produce phenazine-1-carboxamide (PCN) in high yield. Phenazine production is regulated by a quorum sensing (QS) system that involves the N-acylated homoserine lactones (AHLs)-a prevalent type of QS molecule. RESULTS: Three QS signals were detected by thin layer chromatography (TLC) and high-performance liquid chromatography-mass spectrometry (HPLC-MS/MS), which identified to be N-(3-hydroxy hexanoyl)-L-homoserine lactone (3-OH-C6-HSL), N-(3-hydroxy octanoyl)-L-homoserine lactone (3-OH-C8-HSL) and N-(3-hydroxy decanoyl)-L-homoserine lactone (3-OH-C10-HSL). The signal types and methods of synthesis were different from that in other phenazine-producing Pseudomonas strains. By non-scar deletion and heterologous expression techniques, the biosynthesis of the AHL-signals was confirmed to be only catalyzed by PhzI, while other AHLs synthases i.e., CsaI and HdtS were not involved in strain HT66. In comparison to wild-type HT66, PCN production was 2.3-folds improved by over-expression of phzI, however, phzI or phzR mutant did not produce PCN. The cell growth of HT66∆phzI mutant was significantly decreased, and the biofilm formation in phzI or phzR inactivated strains of HT66 decreased to various extents. CONCLUSION: In conclusion, the results demonstrate that PhzI-PhzR system plays a critical role in numerous biological processes including phenazine production.


Subject(s)
4-Butyrolactone/analogs & derivatives , Gene Expression Regulation, Bacterial , Pseudomonas chlororaphis/genetics , Pseudomonas chlororaphis/metabolism , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , 4-Butyrolactone/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biofilms/growth & development , Chromatography, Thin Layer , Oryza/microbiology , Phenazines/metabolism , Quorum Sensing/genetics , Quorum Sensing/physiology , Rhizosphere , Tandem Mass Spectrometry , Trans-Activators
12.
Planta ; 246(3): 405-420, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28451749

ABSTRACT

MAIN CONCLUSION: This study provides new insights into the biosynthesis regulation and in planta function of the lignan yatein in flax leaves. Pinoresinol-lariciresinol reductases (PLR) catalyze the conversion of pinoresinol into secoisolariciresinol (SECO) in lignan biosynthesis. Several lignans are accumulated in high concentrations, such as SECO accumulated as secoisolariciresinol diglucoside (SDG) in seeds and yatein in aerial parts, in the flax plant (Linum usitatissimum L.) from which two PLR enzymes of opposite enantioselectivity have been isolated. While LuPLR1 catalyzes the biosynthesis of (+)-SECO leading to (+)-SDG in seeds, the role(s) of the second PLR (LuPLR2) is not completely elucidated. This study provides new insights into the in planta regulation and function of the lignan yatein in flax leaves: its biosynthesis relies on a different PLR with opposite stereospecificity but also on a distinct expression regulation. RNAi technology provided evidence for the in vivo involvement of the LuPLR2 gene in the biosynthesis of (-)-yatein accumulated in flax leaves. LuPLR2 expression in different tissues and in response to stress was studied by RT-qPCR and promoter-reporter transgenesis showing that the spatio-temporal expression of the LuPLR2 gene in leaves perfectly matches the (-)-yatein accumulation and that LuPLR2 expression and yatein production are increased by methyl jasmonate and wounding. A promoter deletion approach yielded putative regulatory elements. This expression pattern in relation to a possible role for this lignan in flax defense is discussed.


Subject(s)
4-Butyrolactone/analogs & derivatives , Flax/physiology , Genes, Plant/genetics , Oxidoreductases/genetics , Plant Immunity/genetics , 4-Butyrolactone/biosynthesis , Dioxoles , Flax/enzymology , Flax/genetics , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , Genes, Plant/physiology , Glucuronidase/metabolism , Metabolic Networks and Pathways , Oxidoreductases/physiology , Plant Immunity/physiology , Plant Leaves/enzymology , Plant Leaves/metabolism , Plants, Genetically Modified/genetics , Promoter Regions, Genetic/genetics , Real-Time Polymerase Chain Reaction , Nicotiana/genetics
13.
J Sci Food Agric ; 97(12): 4190-4197, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28239868

ABSTRACT

BACKGROUND: We previously demonstrated that disruption of the pksCT gene of Monascus led to a greater than 98% decrease in its citrinin production capacity in Monascus (PHDS26). Two potentially toxic compounds, monascopyridine A (MPA) and monascopyridine B (MPB), were found in the fermentation products of the pksCT gene-disrupted Monascus. Moreover, a rapid and reliable high-performance liquid chromatography method was developed for the simultaneous determination of MPA and MPB. We studied the effects of various extraction parameters and designed an orthogonal experiment to investigate the importance of each factor. RESULTS: The optimal extraction conditions were: methanol concentration, 90%; extraction temperature, 40 °C; extraction time, 10 min; two extraction cycles; and a solid-liquid ratio of 1:25. Under the optimal chromatographic conditions, good linearity was reached over the concentration ranges 0.5-200 µg mL-1 and 0.5-300 µg mL-1 for MPA and MPB, respectively, and the corresponding determination coefficients were 0.9999 and 0.9997. The percentage relative standard deviation values of within-day and between-day precision for MPA were 2.0% and 2.1%, respectively; the corresponding values for MPB were 4.8% and 4.6%. The average recovery for MPA and MPB was 99.9% and 94%, respectively. CONCLUSION: Maximum MPA and MPB yields (2073.7 and 1961.7 µg g-1 , respectively) were observed after 16 days of cultivation. © 2017 Society of Chemical Industry.


Subject(s)
4-Butyrolactone/analogs & derivatives , Fungal Proteins/genetics , Monascus/metabolism , 4-Butyrolactone/analysis , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/toxicity , Chromatography, High Pressure Liquid , Fermentation , Fungal Proteins/metabolism , Gene Silencing , Isoquinolines/analysis , Isoquinolines/toxicity , Monascus/chemistry , Monascus/genetics
14.
Trends Biochem Sci ; 37(1): 7-14, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22099187

ABSTRACT

N-Acyl-L-homoserine lactones (AHLs) are a major class of quorum-sensing signals used by Gram-negative bacteria to regulate gene expression in a population-dependent manner, thereby enabling group behavior. Enzymes capable of generating and catabolizing AHL signals are of significant interest for the study of microbial ecology and quorum-sensing pathways, for understanding the systems that bacteria have evolved to interact with small-molecule signals, and for their possible use in therapeutic and industrial applications. The recent structural and functional studies reviewed here provide a detailed insight into the chemistry and enzymology of bacterial communication.


Subject(s)
Carboxylic Ester Hydrolases/metabolism , Gram-Negative Bacteria/enzymology , Ligases/metabolism , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , 4-Butyrolactone/metabolism , Carboxylic Ester Hydrolases/chemistry , Carboxylic Ester Hydrolases/genetics , Crystallography, X-Ray , Gram-Negative Bacteria/metabolism , Ligases/chemistry , Ligases/genetics , Models, Molecular
15.
Appl Microbiol Biotechnol ; 100(7): 3009-22, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26603760

ABSTRACT

Cultivation of Aspergillus terreus ATCC 20542 in a stirred tank bioreactor was performed to induce the biosynthesis of secondary metabolites and provide the bioprocess-related insights into the metabolic capabilities of the investigated strain. The activation of biosynthetic routes was attempted by the diversification of process conditions and growth media. Several strategies were tested, including the addition of rapeseed oil or inulin, changing the concentration of nitrogen source, reduction of chlorine supply, cultivation under saline conditions, and using various aeration schemes. Fifteen secondary metabolites were identified in the course of the study by using ultra-high performance liquid chromatography coupled with mass spectrometry, namely mevinolinic acid, 4a,5-dihydromevinolinic acid, 3α-hydroxy-3,5-dihydromonacolin L acid, terrein, aspulvinone E, dihydroisoflavipucine, (+)-geodin, (+)-bisdechlorogeodin, (+)-erdin, asterric acid, butyrolactone I, desmethylsulochrin, questin, sulochrin, and demethylasterric acid. The study also presents the collection of mass spectra that can serve as a resource for future experiments. The growth in a salt-rich environment turned out to be strongly inhibitory for secondary metabolism and the formation of dense and compact pellets was observed. Generally, the addition of inulin, reducing the oxygen supply, and increasing the content of nitrogen source did not enhance the production of examined molecules. The most successful strategy involved the addition of rapeseed oil to the chlorine-deficient medium. Under these conditions, the highest levels of butyrolactone I, asterric acid, and mevinolinic acid were achieved and the presence of desmethylsulochrin and (+)-bisdechlorogeodin was detected in the broth. The constant and relatively high aeration rate in the idiophase was shown to be beneficial for terrein and (+)-geodin biosynthesis.


Subject(s)
Aspergillus/drug effects , Fatty Acids, Monounsaturated/pharmacology , Inulin/pharmacology , Secondary Metabolism/drug effects , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/biosynthesis , Anthraquinones/metabolism , Aspergillus/metabolism , Batch Cell Culture Techniques , Benzofurans/metabolism , Biomass , Bioreactors , Chromatography, High Pressure Liquid , Cyclopentanes/metabolism , Fatty Acids, Monounsaturated/metabolism , Fermentation , Inulin/metabolism , Lovastatin/analogs & derivatives , Lovastatin/biosynthesis , Phenyl Ethers/metabolism , Pyridones/metabolism , Rapeseed Oil
16.
J Sci Food Agric ; 96(12): 4037-47, 2016 Sep.
Article in English | MEDLINE | ID: mdl-26710926

ABSTRACT

BACKGROUND: In the process of Pseudomonas fluorescens biofilm formation, N-acyl-l-homoserine lactone (AHL)-mediated flagella synthesis plays a key role. Inhibition of AHL production may attenuate P. fluorescens biofilm on solid surfaces. This work validated the anti-biofilm properties of p-coumaric and gallic acids via the ability of phenolics to suppress AHL synthesis in P. fluorescens KM120. The dependence between synthesis of AHL molecules, expression of flagella gene (flgA) and the ability of biofilm formation by P. fluorescens KM120 on a stainless steel surface (type 304L) was also investigated. RESULTS: Research was carried out in a purpose-built flow cell device. Limitations on AHL synthesis in P. fluorescens KM120 were observed at concentrations of 120 and 240 µmol L(-1) of phenolic acids in medium. At such levels of gallic and p-coumaric acids the ability of P. fluorescens KM120 to synthesize 3-oxo-C6-homoserine lactone (HSL) was not observed. These concentrations caused decreased expression of flgA gene in P. fluorescens KM120. The changes in expression of AHL-dependent flgA gene significantly decreased the rate of microorganism colonization on the stainless steel surface. CONCLUSION: Phenolic acids are able to inhibit biofilm formation. The results obtained in the work may help to develop alternative techniques for anti-biofilm treatment in the food industry. © 2015 Society of Chemical Industry.


Subject(s)
4-Butyrolactone/analogs & derivatives , Coumaric Acids/pharmacology , Gallic Acid/pharmacology , Pseudomonas fluorescens/drug effects , 4-Butyrolactone/biosynthesis , Biofilms/drug effects , Biofilms/growth & development , Flagella/genetics , Food Microbiology , Gene Expression Regulation, Bacterial , Humans , Propionates , Pseudomonas fluorescens/genetics
17.
Appl Environ Microbiol ; 81(17): 5917-26, 2015 Sep 01.
Article in English | MEDLINE | ID: mdl-26092466

ABSTRACT

Nitrobacter winogradskyi is a chemolithotrophic bacterium that plays a role in the nitrogen cycle by oxidizing nitrite to nitrate. Here, we demonstrate a functional N-acyl-homoserine lactone (acyl-HSL) synthase in this bacterium. The N. winogradskyi genome contains genes encoding a putative acyl-HSL autoinducer synthase (nwi0626, nwiI) and a putative acyl-HSL autoinducer receptor (nwi0627, nwiR) with amino acid sequences 38 to 78% identical to those in Rhodopseudomonas palustris and other Rhizobiales. Expression of nwiI and nwiR correlated with acyl-HSL production during culture. N. winogradskyi produces two distinct acyl-HSLs, N-decanoyl-l-homoserine lactone (C10-HSL) and a monounsaturated acyl-HSL (C10:1-HSL), in a cell-density- and growth phase-dependent manner, during batch and chemostat culture. The acyl-HSLs were detected by bioassay and identified by ultraperformance liquid chromatography with information-dependent acquisition mass spectrometry (UPLC-IDA-MS). The C=C bond in C10:1-HSL was confirmed by conversion into bromohydrin and detection by UPLC-IDA-MS.


Subject(s)
4-Butyrolactone/analogs & derivatives , Nitrites/metabolism , Nitrobacter/metabolism , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Chromatography, Liquid , Gene Expression Regulation, Bacterial , Mass Spectrometry , Nitrobacter/classification , Nitrobacter/genetics , Nitrobacter/growth & development , Phylogeny , Transcription Factors/genetics , Transcription Factors/metabolism
18.
Microb Cell Fact ; 14: 191, 2015 Nov 25.
Article in English | MEDLINE | ID: mdl-26608135

ABSTRACT

BACKGROUND: Quorum sensing (QS) networks are more commonly known as acyl homoserine lactone (HSL) networks. Recently, p-coumaroyl-HSL has been found in a photosynthetic bacterium. p-coumaroyl-HSL is derived from a lignin monomer, p-coumaric acid, rather than a fatty acyl group. The p-coumaroyl-HSL may serve an ecological role in diverse QS pathways between p-coumaroyl-HSL producing bacteria and specific plants. Interference with QS has been regarded as a novel way to control bacterial infections. Heterologous production of the QS molecule, p-coumaroyl-HSL, could provide a sustainable and controlled means for its large-scale production, in contrast to the restricted feedback regulation and extremely low productivity of natural producers. RESULTS: We developed an artificial biosynthetic process for phenylacetyl-homoserine lactone analogs, including cinnamoyl-HSL, p-coumaroyl-HSL, caffeoyl-HSL, and feruloyl-HSL, using a bioconversion method via E. coli (CB1) in the co-expression of the codon-optimized LuxI-type synthase (RpaI) and p-coumaroyl-CoA ligase (4CL2nt). In addition to this, we show the de novo production of p-coumaroyl-HSL in heterologous host E. coli (DN1) and tyrosine overproducing E. coli (DN2), containing the rpaI gene in addition to p-coumaroyl-CoA biosynthetic genes. The yields for p-coumaroyl-HSL reached 93.4 ± 0.6 and 142.5 ± 1.0 mg/L in the S-adenosyl-L-methionine and L-methionine feeding culture in the DN2 strain, respectively. CONCLUSIONS: This is the first report of a de novo biosynthesis in a heterologous host yielding a QS molecule, p-coumaroyl-HSL from a glucose medium using a single vector system combining p-coumaroyl-CoA biosynthetic genes and the LuxI-type synthase gene.


Subject(s)
4-Butyrolactone/analogs & derivatives , Escherichia coli/metabolism , 4-Butyrolactone/analysis , 4-Butyrolactone/biosynthesis , 4-Butyrolactone/chemistry , Chromatography, High Pressure Liquid , Coenzyme A Ligases/genetics , Coenzyme A Ligases/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Quorum Sensing , Nicotiana/enzymology , Tyrosine/metabolism
19.
Environ Res ; 142: 66-71, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26114916

ABSTRACT

BACKGROUND: The gut microbiome plays an important role in the development of disease. The composition of the microbiome is influenced by factors such as mode of delivery at birth, diet and antibiotic use, yet the influence of environmental chemical exposures is largely unknown. The antimicrobial compound triclosan, found in many personal care products and widely detected in human urine, is an environmental exposure for which systemic microbiotic effects may be of particular interest. To investigate the relationship between triclosan and gut microflora, we assessed the association between triclosan and enterolactone, an intestinal metabolite that is produced via bacterial transformation of dietary lignans (seeds, nuts) and has known susceptibility to oral antibiotics. METHODS: We examined urinary triclosan and enterolactone for 2005-2008 U.S. National Health and Nutrition Examination Survey subjects, aged ≥20 years (n=3041). We also examined the association between prescription antibiotic use and enterolactone to confirm its susceptibility to changes in bacterial composition of the body. Associations between natural log-transformed enterolactone and (1) detected vs. not detected (<2.3 ng/mL) triclosan, (2) triclosan quintiles (Q1-Q5), and (3) any vs. no antibiotics were estimated with multiple linear regression, adjusting for sex, age, race, body mass index, poverty income ratio, education, fiber intake, bowel movement frequency, cotinine and creatinine (n=2441). RESULTS: Triclosan was detected in 80% of subjects (range: <2.3-3620 ng/mL), while enterolactone was detected in >99% of subjects (range: <0.1-122,000 ng/mL). After adjustment, enterolactone was not associated with triclosan (detect vs. non-detect: ß= 0.07 (95% CI: -0.15, 0.30); Q5 (≥104.5 ng/mL) vs. Q1 (none): ß= 0.06 (95% CI: -0.21, 0.34)). In sex-stratified analyses, triclosan was associated with higher enterolactone in women (detect vs. non-detect: ß= 0.31 (95% CI: -0.07, 0.70), but not men ß= -0.18 (95% CI: -0.47, 0.11). However, any antibiotic use (n=112), as compared to no antibiotic use, was associated with significantly lower enterolactone (ß=-0.78 (95%CI: -1.22, -0.36)), with no sex-specific effects. This association was driven by inverse associations with the following antibiotic classes: macrolide derivatives, quinolones, sulfonamides, and lincomycin derivatives. CONCLUSIONS: Antibiotics, but not triclosan, are negatively associated with urinary enterolactone. Antibiotics may reduce enterolactone by killing certain gut bacteria. At levels detected in the U.S., triclosan does not appear to be acting similarly, despite broad antimicrobial properties. Additional study of determinants of triclosan exposure and enterolactone production may be needed to better understand positive associations among women.


Subject(s)
4-Butyrolactone/analogs & derivatives , Anti-Bacterial Agents/adverse effects , Gastrointestinal Microbiome/drug effects , Lignans/analysis , Prescription Drugs , Triclosan/adverse effects , 4-Butyrolactone/analysis , 4-Butyrolactone/biosynthesis , Adult , Anti-Bacterial Agents/urine , Female , Gastrointestinal Microbiome/physiology , Humans , Lignans/biosynthesis , Male , Middle Aged , Triclosan/urine , Young Adult
20.
Appl Microbiol Biotechnol ; 99(3): 1287-98, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25326777

ABSTRACT

Quorum sensing molecular γ-butyrolactones (GBL) are widely distributed among the genus Streptomyces. Their cognate receptors have been demonstrated to control secondary metabolism and/or morphological differentiation. ScgA is responsible for the biosynthesis of GBL in Streptomyces chattanoogensis. According to the genome-wide transcriptome analysis of the ΔscgA mutant, we found that the expression of sprA, which encodes a GBL receptor homologue, was shown to be positively regulated by ScgA. Electrophoretic mobility shift assays and DNase I footprinting assays showed that SprA bound to two specific autoregulatory element (ARE) sequences located upstream of the sprA gene, indicating that its expression is self-regulated. SprA was involved in biosynthesis of GBL by repressing the expression of scgA. An Escherichia coli-based luciferase report system demonstrated that SprA directly repressed the expression of scgR, which encodes a GBL receptor. Like deletion of scgA, the disruption of sprA resulted in decreased production of the antibiotic natamycin in liquid culture and retarded morphological differentiation on solid agar. This work indicates that SprA acts as a pleiotropic regulator of both morphogenesis and the production of natamycin.


Subject(s)
Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial , Repressor Proteins/metabolism , Streptomyces/genetics , Transcriptome , 4-Butyrolactone/biosynthesis , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Molecular Sequence Data , Repressor Proteins/chemistry , Repressor Proteins/genetics , Sequence Alignment , Streptomyces/chemistry , Streptomyces/metabolism
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