Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 268
Filter
Add more filters

Country/Region as subject
Publication year range
1.
Biotechnol Bioeng ; 118(5): 1818-1831, 2021 05.
Article in English | MEDLINE | ID: mdl-33501689

ABSTRACT

The reduction of antibody core-fucosylation is known to enhance antibody-dependent cellular cytotoxicity (ADCC). In this study, 5-Thio-l-Fucose (ThioFuc) was investigated as a media and feed supplement for modulating the fucosylation profile of therapeutic proteins and, thereby, improving the resulting effector functions. Glycan analysis of five different therapeutic proteins produced by a diverse set of Chinese hamster ovary cell lines demonstrated a clone dependent impact of ThioFuc treatment. Using rituximab as a model, an efficient dose- and time-dependent reduction of core-fucosylation up to a minimum of 5% were obtained by ThioFuc. Besides a concomitant increase in the afucosylation level up to 48%, data also revealed up to 47% incorporation of ThioFuc in place of core-fucosylation. In accordance with the glycan data, antibodies produced in the presence of ThioFuc revealed an enhanced FcγRIIIa binding up to 7.7-fold. Furthermore, modified antibodies subjected to a cell-based ADCC reporter bioassay proved to exert both a 1.5-fold enhanced ADCC efficacy and 2.6-fold enhancement in potency in comparison to their native counterparts-both of which contribute to an improvement in the ADCC activity. In conclusion, ThioFuc is a potent fucose derivative with potential applications in drug development processes.


Subject(s)
Bioreactors , Cell Culture Techniques/methods , Fucose/analogs & derivatives , Receptors, IgG , Recombinant Proteins , Animals , Antibody-Dependent Cell Cytotoxicity/drug effects , CHO Cells , Cricetinae , Cricetulus , Fucose/chemistry , Fucose/metabolism , Fucose/pharmacology , Glycosylation/drug effects , Humans , Protein Binding , Receptors, IgG/chemistry , Receptors, IgG/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
2.
Org Biomol Chem ; 19(13): 2968-2977, 2021 04 07.
Article in English | MEDLINE | ID: mdl-33729259

ABSTRACT

GH29 α-l-fucosidases catalyze hydrolysis of terminal α-l-fucosyl linkages with varying specificity and are expressed by prominent members of the human gut microbiota. Both homeostasis and dysbiosis at the human intestinal microbiota interface have been correlated with altered fucosidase activity. Herein we describe the development of a 2-deoxy-2-fluoro fucosyl fluoride derivative with an azide mini-tag as an activity-based probe (ABP) for selective in vitro labelling of GH29 α-l-fucosidases. Only catalytically active fucosidases are inactivated by this ABP, allowing their functionalization with a biotin reporter group via the CuAAC reaction and subsequent in-gel detection at nanogram levels. The ABP we present here is shown to be active against a GH29 α-l-fucosidase from Bacteroides fragilis and capable of labeling two other GH29 α-l-fucosidases with different linkage specificity, illustrating its broader utility. This novel ABP is a valuable addition to the toolbox of fucosidase probes by allowing identification and functional studies of the wide variety of GH29 fucosidases, including those in the gut microbiota.


Subject(s)
Fucose/chemistry , Molecular Probes/chemistry , alpha-L-Fucosidase/analysis , Bacteroides fragilis/enzymology , Fucose/analogs & derivatives , Fucose/pharmacology , Gastrointestinal Microbiome , Humans , Molecular Probes/chemical synthesis , Molecular Probes/pharmacology , Molecular Structure , alpha-L-Fucosidase/antagonists & inhibitors , alpha-L-Fucosidase/metabolism
3.
Nat Chem Biol ; 14(1): 65-71, 2018 Jan.
Article in English | MEDLINE | ID: mdl-29176671

ABSTRACT

Notch is a cell-surface receptor that controls cell-fate decisions and is regulated by O-glycans attached to epidermal growth factor-like (EGF) repeats in its extracellular domain. Protein O-fucosyltransferase 1 (Pofut1) modifies EGF repeats with O-fucose and is essential for Notch signaling. Constitutive activation of Notch signaling has been associated with a variety of human malignancies. Therefore, tools that inhibit Notch activity are being developed as cancer therapeutics. To this end, we screened L-fucose analogs for their effects on Notch signaling. Two analogs, 6-alkynyl and 6-alkenyl fucose, were substrates of Pofut1 and were incorporated directly into Notch EGF repeats in cells. Both analogs were potent inhibitors of binding to and activation of Notch1 by Notch ligands Dll1 and Dll4, but not by Jag1. Mutagenesis and modeling studies suggest that incorporation of the analogs into EGF8 of Notch1 markedly reduces the ability of Delta ligands to bind and activate Notch1.


Subject(s)
EGF Family of Proteins/metabolism , Fucose/analogs & derivatives , Fucose/pharmacology , Fucosyltransferases/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/metabolism , Receptors, Notch/antagonists & inhibitors , Signal Transduction/drug effects , Animals , Fucose/chemistry , Fucose/genetics , Fucosyltransferases/genetics , HEK293 Cells , Humans , Ligands , Protein Binding
4.
Glycoconj J ; 37(2): 221-229, 2020 04.
Article in English | MEDLINE | ID: mdl-31792892

ABSTRACT

Fucosylated oligosaccharides are interesting molecules due to their bioactive properties. In particular, their application as active ingredient in milk powders is attractive for dairy industries. The objective of this study was to characterize the glycosyl hydrolase family 29 α-fucosidase produced by Aspergillus niger and test its ability to transfucosylate lactose with a view towards potential industrial applications such as the valorization of the lactose side stream produced by dairy industry. In order to reduce costs and toxicity the use of free fucose instead of environmentally questionable fucose derivatives was studied. In contrast to earlier studies, a recombinantly produced A. niger α-fucosidase was utilized. Using pNP-fucose as substrate, the optimal pH for hydrolytic activity was determined to be 3.8. The optimal temperature for a 30-min reaction was 60 °C, and considering temperature stability, the optimal temperature for a 24-h reaction was defined as 45 °C For the same hydrolysis reaction, the kinetic values were calculated to be 0.385 mM for the KM and 2.8 mmol/(mg*h) for the Vmax. Transfucosylation of lactose occurred at high substrate concentrations when reaction time was elongated to several days. The structure of the product trisaccharide was defined as 1-fucosyllactose, where fucose is α-linked to the anomeric carbon of the ß-glucose moiety of lactose. Furthermore, the enzyme was able to hydrolyze its own transfucosylation product and 2'-fucosyllactose but only poorly 3-fucosyllactose. As a conclusion, α-fucosidase from A. niger can transfucosylate lactose using free fucose as substrate producing a novel non-reducing 1-fucosyllactose.


Subject(s)
Aspergillus niger/enzymology , Fungal Proteins/metabolism , alpha-L-Fucosidase/metabolism , Enzyme Stability , Fucose/analogs & derivatives , Fucose/metabolism , Lactose/analogs & derivatives , Lactose/metabolism , Substrate Specificity
5.
Int J Mol Sci ; 21(17)2020 Aug 20.
Article in English | MEDLINE | ID: mdl-32825463

ABSTRACT

Fucosylated glycans critically regulate the physiological functions of proteins and cells. Alterations in levels of fucosylated glycans are associated with various diseases. For detection and functional modulation of fucosylated glycans, chemical biology approaches using fucose (Fuc) analogs are useful. However, little is known about how efficiently each unnatural Fuc analog is utilized by enzymes in the biosynthetic pathway of fucosylated glycans. We show here that three clickable Fuc analogs with similar but distinct structures labeled cellular glycans with different efficiency and protein specificity. For instance, 6-alkynyl (Alk)-Fuc modified O-Fuc glycans much more efficiently than 7-Alk-Fuc. The level of GDP-6-Alk-Fuc produced in cells was also higher than that of GDP-7-Alk-Fuc. Comprehensive in vitro fucosyltransferase assays revealed that 7-Alk-Fuc is commonly tolerated by most fucosyltransferases. Surprisingly, both protein O-fucosyltransferases (POFUTs) could transfer all Fuc analogs in vitro, likely because POFUT structures have a larger space around their Fuc binding sites. These findings demonstrate that labeling and detection of fucosylated glycans with Fuc analogs depend on multiple cellular steps, including conversion to GDP form, transport into the ER or Golgi, and utilization by each fucosyltransferase, providing insights into design of novel sugar analogs for specific detection of target glycans or inhibition of their functions.


Subject(s)
Fucose/analogs & derivatives , Fucose/chemistry , Fucosyltransferases/metabolism , Glycoproteins/chemistry , Glycoproteins/metabolism , Binding Sites , Biotinylation , Click Chemistry , Fucose/metabolism , Fucosyltransferases/chemistry , Fucosyltransferases/genetics , Glycosylation , Guanosine Diphosphate/chemistry , Guanosine Diphosphate/metabolism , HEK293 Cells , Humans , Polysaccharides/chemistry , Polysaccharides/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Thrombospondin 1/genetics , Thrombospondin 1/metabolism
6.
J Biol Chem ; 293(30): 11966-11967, 2018 07 27.
Article in English | MEDLINE | ID: mdl-30054292

ABSTRACT

Human norovirus binding to histo-blood group antigens (HBGAs) is thought to direct their entry into host cells. However, the glycan epitopes characteristic of HBGAs are also present on oligosaccharides abundant in human milk. In this issue of JBC, Hanisch et al compared norovirus binding to human gastric mucins and human milk oligosaccharides, finding those bound most avidly are rich in α-fucose. Mimicry of these epitopes with α-fucose multivalently displayed on other carbohydrate scaffolds successfully scavenged this prevalent virus, providing new insights into norovirus biology and clues for future therapeutic development.


Subject(s)
Caliciviridae Infections/immunology , Fucose/immunology , Milk, Human/immunology , Norovirus/immunology , Oligosaccharides/immunology , Binding Sites , Epitopes/chemistry , Epitopes/immunology , Fucose/analogs & derivatives , Humans , Milk, Human/chemistry , Mucins/chemistry , Mucins/immunology , Norovirus/physiology , Oligosaccharides/chemistry , Polysaccharides/chemistry , Polysaccharides/immunology , Virus Internalization
7.
Glycoconj J ; 36(3): 199-209, 2019 06.
Article in English | MEDLINE | ID: mdl-31030313

ABSTRACT

Breast-fed infants have Bifidobacterium-rich gut microbiota compared to infants fed formula. Fucosylated oligosaccharides are the major components of human milk oligosaccharide (HMO) which confer various beneficial effects including prebiotic effect and protection from pathogenic infection on the host. A novel prebiotics was developed using bifidobacterial ß-galactosidase and fucose and lactose as substrates. Structure analysis revealed it as ß-D-galactopyranosyl-(1 → 3)-O-L-fucopyranose named as ß-galactosyl fucose (gal-fuc), which is different from common fucosylated HMOs with α1-2, α1-3, and α1-4 linkages. Among the four Lactobacillus strains examined, all but L. delbrueckii subsp. bilgaricus KCTC 3635 grew better on gal-fuc than on ß-GOS. Among the 11 bifidobacterial species examined, all except for B. bifium used gal-fuc as much as GOS. Moreover, the gal-fuc was noticeably better used by Bifidobacterium infantis, the major intestinal bacteria of breast fed infant. Among 15 non-probiotic bacteria, only 4 strains used gal-fuc better than ß-GOS. In conclusion, a novel gal-fuc is expected to contribute to beneficial changes of gut microbiota. Graphical abstract A novel form of ß-galactosyl fucose with an improved prebiotic effect.


Subject(s)
Bacterial Proteins/metabolism , Fucose/analogs & derivatives , Galactose/analogs & derivatives , Prebiotics , beta-Galactosidase/metabolism , Bacterial Proteins/genetics , Bifidobacterium/enzymology , Biocatalysis , Caco-2 Cells , Fucose/pharmacology , Gastrointestinal Microbiome/drug effects , Humans , Lactose/chemistry , beta-Galactosidase/genetics
8.
Glycoconj J ; 36(3): 219-226, 2019 06.
Article in English | MEDLINE | ID: mdl-31098851

ABSTRACT

Humanized monoclonal antibody HMMC-1 established by immunizing transchromosomal mice with a human uterine endometrial cancer cell line has been found to react with the H-antigen carried on core l O-glycans through cotransfection of glycosyltransferases for O-glycans and inhibition of antibody-binding with synthetic oligosaccharides. However, direct binding analysis of an antibody against glycosphingolipids from human erythrocytes with different ABO blood groups revealed that it was able to bind selectively with polar glycolipids in blood group O, but not blood group A, B and AB erythrocytes. Unexpectedly, typical monofucosylated H-glycolipids, IV2Fucα-nLc4Cer and VI2Fucα-nLc6Cer, which are the precursors for A and B-glycolipids, and were present not only in blood group O, but also A, B and AB-erythrocytes, were not the antigens for the HMMC-1 antibody. The antigen comprised less than 0.001% of the total glycolipids in blood group O-erythrocytes, and was purified by conventional silica gel column chromatography. Structural determination by permethylation, GC-MS, and ESI-TOFMS demonstrated that the structure was a novel glycolipid with a difucosylated H-antigen, Fucα1-2Galß1-4GlcNAcß1-3Gal(2-1αFuc)ß1-4GlcNAcß1-3Galß1-4GlcNAcß1-3Galß1-4Glcß1-1'Cer, VI2,VIII2(Fucα)2-nLc8Cer, whose terminal difucosylated structure was the epitope of the HMMC-1 antibody. The HMMC-1 glycolipid was detected in five out of 29 tissues from patients suffering from uterine cervical carcinomas, irrespective of their ABO-blood groups.


Subject(s)
ABO Blood-Group System/chemistry , Carcinoma/blood , Erythrocytes/immunology , Uterine Cervical Neoplasms/blood , ABO Blood-Group System/immunology , Antibodies, Monoclonal/immunology , Carcinoma/immunology , Cervix Uteri/immunology , Female , Fucose/analogs & derivatives , Glycolipids/chemistry , Glycolipids/immunology , Humans , Uterine Cervical Neoplasms/immunology
9.
Bioorg Chem ; 88: 102935, 2019 07.
Article in English | MEDLINE | ID: mdl-31030060

ABSTRACT

Alzheimer's disease (AD) is a multifaceted neurodegenerative disorder affecting the elderly people. For the AD treatment, there is inefficiency in the existing medication, as these drugs reduce only the symptoms of the disease. Since multiple pathological proteins are involved in the development of AD, searching for a single molecule targeting multiple AD proteins will be a new strategy for the management of AD. In view of this, the present study was designed to synthesize and evaluate the multifunctional neuroprotective ability of the sesquiterpene glycoside α-bisabolol ß-D-fucopyranoside (ABFP) against multiple targets like acetylcholinesterase, oxidative stress and ß-amyloid peptide aggregation induced cytotoxicity. In silico computational docking and simulation studies of ABFP with acetylcholinesterase (AChE) showed that it can interact with Asp74 and Thr75 residues of the enzyme. The in vitro studies showed that the compound possess significant ability to inhibit the AChE enzyme apart from exhibiting antioxidant, anti-aggregation and disaggregation properties. In addition, molecular dynamics simulation studies proved that the interacting residue between Aß peptide and ABFP was found to be involved in Leu34 and Ile31. Furthermore, the compound was able to protect the Neuro2 a cells against Aß25-35 peptide induced toxicity. Overall, the present study evidently proved ABFP as a neuroprotective agent, which might act as a multi-target compound for the treatment of Alzheimer's disease.


Subject(s)
Amyloid beta-Peptides/antagonists & inhibitors , Cholinesterase Inhibitors/pharmacology , Fucose/pharmacology , Monocyclic Sesquiterpenes/pharmacology , Acetylcholinesterase/metabolism , Amyloid beta-Peptides/metabolism , Animals , Biphenyl Compounds/antagonists & inhibitors , Biphenyl Compounds/metabolism , Cell Line , Cell Survival/drug effects , Cholinesterase Inhibitors/chemical synthesis , Cholinesterase Inhibitors/chemistry , Dose-Response Relationship, Drug , Fucose/analogs & derivatives , Fucose/chemistry , Mice , Models, Molecular , Molecular Structure , Monocyclic Sesquiterpenes/chemical synthesis , Monocyclic Sesquiterpenes/chemistry , Picrates/antagonists & inhibitors , Picrates/metabolism , Protein Aggregates/drug effects , Structure-Activity Relationship
10.
Bioconjug Chem ; 29(1): 83-88, 2018 01 17.
Article in English | MEDLINE | ID: mdl-29240403

ABSTRACT

Bacterial and fungal pathogens involved in lung infection in cystic fibrosis patients utilize a particular family of glycan-binding proteins, characterized by the presentation of six fucose-binding sites on a ring-shaped scaffold. These lectins are attractive targets for anti-infectious compounds that could interfere in the recognition of host tissues by pathogens. The design of a cyclopeptide-based hexavalent structure allowed for the presentation of six fucose residues. The synthetic hexavalent compound displays liable geometry resulting in high-avidity binding by lectins from Aspergillus fumigatus and Burkholderia ambifaria. Replacing the fucose residue with a conformationally constrained fucomimetic does not alter the affinity and provides fine specificity with no binding to other fucose-specific lectins.


Subject(s)
Anti-Infective Agents/pharmacology , Aspergillus fumigatus/metabolism , Bacterial Proteins/metabolism , Burkholderia/metabolism , Fucose/pharmacology , Fungal Proteins/metabolism , Lectins/metabolism , Peptides, Cyclic/pharmacology , Anti-Infective Agents/chemistry , Aspergillosis/drug therapy , Aspergillosis/metabolism , Aspergillus fumigatus/drug effects , Burkholderia/drug effects , Burkholderia Infections/drug therapy , Drug Discovery , Fucose/analogs & derivatives , Humans , Models, Molecular , Peptides, Cyclic/chemistry
11.
Glycoconj J ; 35(1): 31-40, 2018 02.
Article in English | MEDLINE | ID: mdl-28905280

ABSTRACT

Fucosylated oligosaccharides have an important role in maintaining a healthy immune system and homeostatic gut microflora. This study employed a commercial ß-galactosidase in the production of fucose-containing galacto-oligosaccharides (fGOS) from lactose and fucose. The production was optimized using experiment design and optimal conditions for a batch production in 3-liter scale. The reaction product was analyzed and the produced galactose-fucose disaccharides were purified. The structures of these disaccharides were determined using NMR and it was verified that one major product with the structure Galß1-3Fuc and two minor products with the structures Galß1-4Fuc and Galß1-2Fuc were formed. Additionally, the product composition was defined in more detail using several different analytical methods. It was concluded that the final product contained 42% total monosaccharides, 40% disaccharides and 18% of larger oligosaccharides. 290 µmol of fGOS was produced per gram of reaction mixture and 37% of the added fucose was bound to fGOS. The fraction of fGOS from total oligosaccharides was determined as 44%. This fGOS product could be used as a new putative route to deliver fucose to the intestine.


Subject(s)
Disaccharides/chemical synthesis , Fucose/analogs & derivatives , Galactose/analogs & derivatives , beta-Galactosidase/metabolism , Disaccharides/chemistry , Glycosylation , Oligosaccharides/chemistry
12.
Extremophiles ; 22(6): 889-894, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30088105

ABSTRACT

The influence of CaCl2 and NaCl in the hydrolytic activity and the influence of CaCl2 in the synthesis of fucosylated oligosaccharides using α-L-fucosidase from Thermotoga maritima were evaluated. The hydrolytic activity of α-L-fucosidase from Thermotoga maritima displayed a maximum increase of 67% in the presence of 0.8 M NaCl with water activity (aw) of 0.9672 and of 138% in the presence of 1.1 M CaCl2 (aw 0.9581). In addition, the hydrolytic activity was higher when using CaCl2 compared to NaCl at aw of 0.8956, 0.9581 and 0.9672. On the other hand, the effect of CaCl2 in the synthesis of fucosylated oligosaccharides using 4-nitrophenyl-fucose as donor substrate and lactose as acceptor was studied. In these reactions, the presence of 1.1 M CaCl2 favored the rate of transfucosylation, and improved the yield of synthesis duplicating and triplicating it with lactose concentrations of 58 and 146 mM, respectively. CaCl2 did not significatively affect hydrolysis rate in these reactions. The combination of the activating effect of CaCl2, the decrement in aw and lactose concentration had a synergistic effect favoring the synthesis of fucosylated oligosaccharides.


Subject(s)
Bacterial Proteins/metabolism , Oligosaccharides/biosynthesis , Thermotoga maritima/enzymology , alpha-L-Fucosidase/metabolism , Calcium/metabolism , Fucose/analogs & derivatives , Sodium/metabolism
13.
Angew Chem Int Ed Engl ; 57(32): 10178-10181, 2018 08 06.
Article in English | MEDLINE | ID: mdl-29956878

ABSTRACT

The mini fungal lectin PhoSL was recombinantly produced and characterized. Despite a length of only 40 amino acids, PhoSL exclusively recognizes N-glycans with α1,6-linked fucose. Core fucosylation influences the intrinsic properties and bioactivities of mammalian N-glycoproteins and its level is linked to various cancers. Thus, PhoSL serves as a promising tool for glycoprofiling. Without structural precedence, the crystal structure was solved using the zinc anomalous signal, and revealed an interlaced trimer creating a novel protein fold termed ß-prism III. Three biantennary core-fucosylated N-glycan azides of 8 to 12 sugars were cocrystallized with PhoSL. The resulting highly resolved structures gave a detailed view on how the exclusive recognition of α1,6-fucosylated N-glycans by such a small protein occurs. This work also provided a protein consensus motif for the observed specificity as well as a glimpse into N-glycan flexibility upon binding.


Subject(s)
Fucose/chemical synthesis , Lectins/chemistry , Polysaccharides/chemistry , Carbohydrate Conformation , Carbohydrate Sequence , Fucose/analogs & derivatives , Fucose/chemistry , Models, Molecular
14.
Microbiology (Reading) ; 163(3): 355-363, 2017 03.
Article in English | MEDLINE | ID: mdl-28356169

ABSTRACT

The whole-genome sequence of the multiply antibiotic resistant Acinetobacter baumannii isolate RCH51 belonging to sequence type ST103 (Institut Pasteur scheme) revealed that the set of genes at the capsule locus, KL24, includes four genes predicted to direct the synthesis of 3-acetamido-3,6-dideoxy-d-galactose (d-Fuc3NAc), and this sugar was found in the capsular polysaccharide (CPS). One of these genes, fdtE, encodes a novel bifunctional protein with an N-terminal FdtA 3,4-ketoisomerase domain and a C-terminal acetyltransferase domain. KL24 lacks a gene encoding a Wzy polymerase to link the oligosaccharide K units to form the CPS found associated with isolate RCH51, and a wzy gene was found in a small genomic island (GI) near the cpn60 gene. This GI is in precisely the same location as another GI carrying wzy and atr genes recently found in several A. baumannii isolates, but it does not otherwise resemble it. The CPS isolated from RCH51, studied by sugar analysis and 1D and 2D 1H and 13C NMR spectroscopy, revealed that the K unit has a branched pentasaccharide structure made up of Gal, GalNAc and GlcNAc residues with d-Fuc3NAc as a side branch, and the K units are linked via a ß-d-GlcpNAc-(1→3)-ß-d-Galp linkage formed by the Wzy encoded by the GI. The functions of the glycosyltransferases encoded by KL24 were assigned to formation of specific bonds. A correspondence between the order of the genes in KL24 and other KL and the order of the linkages they form was noted, and this may be useful in future predictions of glycosyltransferase specificities.


Subject(s)
Acinetobacter baumannii/genetics , Bacterial Capsules/genetics , Bacterial Proteins/genetics , Glycosyltransferases/genetics , Membrane Proteins/genetics , Polysaccharides, Bacterial/biosynthesis , Acetylgalactosamine/analogs & derivatives , Acetylgalactosamine/biosynthesis , Acinetobacter baumannii/drug effects , Acinetobacter baumannii/isolation & purification , Drug Resistance, Multiple, Bacterial/genetics , Fucose/analogs & derivatives , Fucose/biosynthesis , Genome, Bacterial/genetics , Genomic Islands/genetics , Humans , Membrane Proteins/biosynthesis , Multigene Family/genetics
15.
J Org Chem ; 82(2): 848-868, 2017 01 20.
Article in English | MEDLINE | ID: mdl-28051314

ABSTRACT

The synthesis of complex oligosaccharides is often hindered by a lack of knowledge on the reactivity and selectivity of their constituent building blocks. We investigated the reactivity and selectivity of 2-azidofucosyl (FucN3) donors, valuable synthons in the synthesis of 2-acetamido-2-deoxyfucose (FucNAc) containing oligosaccharides. Six FucN3 donors, bearing benzyl, benzoyl, or tert-butyldimethylsilyl protecting groups at the C3-O and C4-O positions, were synthesized, and their reactivity was assessed in a series of glycosylations using acceptors of varying nucleophilicity and size. It was found that more reactive nucleophiles and electron-withdrawing benzoyl groups on the donor favor the formation of ß-glycosides, while poorly reactive nucleophiles and electron-donating protecting groups on the donor favor α-glycosidic bond formation. Low-temperature NMR activation studies of Bn- and Bz-protected donors revealed the formation of covalent FucN3 triflates and oxosulfonium triflates. From these results, a mechanistic explanation is offered in which more reactive acceptors preferentially react via an SN2-like pathway, while less reactive acceptors react via an SN1-like pathway. The knowledge obtained in this reactivity study was then applied in the construction of α-FucN3 linkages relevant to bacterial saccharides. Finally, a modular synthesis of the Staphylococcus aureus type 5 capsular polysaccharide repeating unit, a trisaccharide consisting of two FucNAc units, is described.


Subject(s)
Fucose/analogs & derivatives , Oligosaccharides/chemical synthesis , Staphylococcus aureus/chemistry , Carbohydrate Sequence , Fucose/chemistry , Glycosylation , Stereoisomerism
16.
Acta Oncol ; 56(11): 1614-1620, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28849688

ABSTRACT

BACKGROUND AND PURPOSE: The galactose analog 2-[18F]fluoro-2-deoxy-d-galactose (FDGal) is used for quantification of regional hepatic metabolic capacity by functional positron emission tomography computerized tomography (PET/CT). In the present study, FDGal PET/CT was used for functional treatment planning (FTP) of stereotactic body radiotherapy (SBRT) of liver metastases with the aim of minimizing radiation dose to the best functioning liver tissue. MATERIAL AND METHODS: Fourteen patients referred for SBRT had FDGal PET/CT performed before and one month after the treatment. The planning CT and the FDGal PET/CT images were deformable co-registered. RESULTS: A reduction in the mean dose of approximately 2 Gy to the best functioning sub-volumes was obtained. One patient developed grade 2 acute morbidity and no patients experienced grade 3 or higher acute morbidities. The regional hepatic metabolic function post-treatment was linearly correlated to the regional radiation dose and for each 10-Gy increase in dose (γ10Gy), the metabolic function was reduced by 12%. A 50% reduction was seen at 22.9 Gy in 3 fractions (CI 95%: 16.7-30.4 Gy). CONCLUSION: The clinical study demonstrates the feasibility for FTP in patients with liver metastases and it was possible to minimize the radiation dose to the best functioning liver tissue.


Subject(s)
Colorectal Neoplasms/surgery , Fluorine Radioisotopes/metabolism , Fucose/analogs & derivatives , Liver Neoplasms/surgery , Radiosurgery , Radiotherapy Planning, Computer-Assisted/methods , Aged , Aged, 80 and over , Colorectal Neoplasms/diagnostic imaging , Colorectal Neoplasms/metabolism , Colorectal Neoplasms/pathology , Female , Follow-Up Studies , Fucose/metabolism , Humans , Liver Neoplasms/diagnostic imaging , Liver Neoplasms/metabolism , Liver Neoplasms/secondary , Male , Middle Aged , Positron Emission Tomography Computed Tomography/methods , Prognosis , Radiopharmaceuticals/metabolism
17.
Biochemistry ; 55(8): 1195-203, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26845253

ABSTRACT

Sugar binding by a cell surface ∼29 kDa lectin (RSL) from the bacterium Ralstonia solanacearum was characterized by NMR spectroscopy. The complexes formed with four monosaccharides and four fucosides were studied. Complete resonance assignments and backbone dynamics were determined for RSL in the sugar-free form and when bound to l-fucose or d-mannose. RSL was found to interact with both the α- and the ß-anomer of l-fucose and the "fucose like" sugars d-arabinose and l-galactose. Peak splitting was observed for some resonances of the binding site residues. The assignment of the split signals to the α- or ß-anomer was confirmed by comparison with the spectra of RSL bound to methyl-α-l-fucoside or methyl-ß-l-fucoside. The backbone dynamics of RSL were sensitive to the presence of ligand, with the protein adopting a more compact structure upon binding to l-fucose. Taking advantage of tryptophan residues in the binding sites, we show that the indole resonance is an excellent reporter on ligand binding. Each sugar resulted in a distinct signature of chemical shift perturbations, suggesting that tryptophan signals are a sufficient probe of sugar binding.


Subject(s)
Bacterial Proteins/metabolism , Fucose/metabolism , Lectins/metabolism , Ralstonia solanacearum/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Fucose/analogs & derivatives , Lectins/chemistry , Mannose/metabolism , Models, Molecular , Molecular Sequence Data , Protein Binding , Ralstonia solanacearum/chemistry , Sequence Alignment
18.
Plant J ; 84(6): 1137-51, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26565655

ABSTRACT

Screening of commercially available fluoro monosaccharides as putative growth inhibitors in Arabidopsis thaliana revealed that 2-fluoro 2-l-fucose (2F-Fuc) reduces root growth at micromolar concentrations. The inability of 2F-Fuc to affect an Atfkgp mutant that is defective in the fucose salvage pathway indicates that 2F-Fuc must be converted to its cognate GDP nucleotide sugar in order to inhibit root growth. Chemical analysis of cell wall polysaccharides and glycoproteins demonstrated that fucosylation of xyloglucans and of N-linked glycans is fully inhibited by 10 µm 2F-Fuc in Arabidopsis seedling roots, but genetic evidence indicates that these alterations are not responsible for the inhibition of root development by 2F-Fuc. Inhibition of fucosylation of cell wall polysaccharides also affected pectic rhamnogalacturonan-II (RG-II). At low concentrations, 2F-Fuc induced a decrease in RG-II dimerization. Both RG-II dimerization and root growth were partially restored in 2F-Fuc-treated seedlings by addition of boric acid, suggesting that the growth phenotype caused by 2F-Fuc was due to a deficiency of RG-II dimerization. Closer investigation of the 2F-Fuc-induced growth phenotype demonstrated that cell division is not affected by 2F-Fuc treatments. In contrast, the inhibitor suppressed elongation of root cells and promoted the emergence of adventitious roots. This study further emphasizes the importance of RG-II in cell elongation and the utility of glycosyltransferase inhibitors as new tools for studying the functions of cell wall polysaccharides in plant development. Moreover, supplementation experiments with borate suggest that the function of boron in plants might not be restricted to RG-II cross-linking, but that it might also be a signal molecule in the cell wall integrity-sensing mechanism.


Subject(s)
Arabidopsis/metabolism , Cell Wall/metabolism , Fucose/analogs & derivatives , Plant Roots/cytology , Arabidopsis/cytology , Arabidopsis/genetics , Cell Shape/drug effects , Fucose/pharmacology , Mutation , Plant Roots/growth & development , Seedlings/drug effects , Seedlings/growth & development , Seedlings/metabolism
19.
Glycobiology ; 26(4): 360-76, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26610890

ABSTRACT

A large family of UDP-GalNAc:polypeptide GalNAc transferases (ppGalNAc-Ts) initiates and defines sites of mucin-type Ser/Thr-O-GalNAc glycosylation. Family members have been classified into peptide- and glycopeptide-preferring subfamilies, although both families possess variable activities against glycopeptide substrates. All but one isoform contains a C-terminal carbohydrate-binding lectin domain whose roles in modulating glycopeptide specificity is just being understood. We have previously shown for several peptide-preferring isoforms that the presence of a remote Thr-O-GalNAc, 6-17 residues from a Ser/Thr acceptor site, may enhance overall catalytic activity in an N- or C-terminal direction. This enhancement varies with isoform and is attributed to Thr-O-GalNAc interactions at the lectin domain. We now report on the glycopeptide substrate utilization of a series of glycopeptide (human-ppGalNAc-T4, T7, T10, T12 and fly PGANT7) and peptide-preferring transferases (T2, T3 and T5) by exploiting a series of random glycopeptide substrates designed to probe the functions of their catalytic and lectin domains. Glycosylation was observed at the -3, -1 and +1 residues relative to a neighboring Thr-O-GalNAc, depending on isoform, which we attribute to specific Thr-O-GalNAc binding at the catalytic domain. Additionally, these glycopeptide-preferring isoforms show remote lectin domain-assisted Thr-O-GalNAc enhancements that vary from modest to none. We conclude that the glycopeptide specificity of the glycopeptide-preferring isoforms predominantly resides in their catalytic domain but may be further modulated by remote lectin domain interactions. These studies further demonstrate that both domains of the ppGalNAc-Ts have specialized and unique functions that work in concert to control and order mucin-type O-glycosylation.


Subject(s)
Glycopeptides/chemistry , Lectins/chemistry , Mucins/chemistry , Sialyltransferases/chemistry , Amino Acid Sequence/genetics , Binding Sites , Carbohydrates/chemistry , Carbohydrates/genetics , Catalytic Domain , Fucose/analogs & derivatives , Fucose/chemistry , Glycopeptides/biosynthesis , Glycopeptides/genetics , Glycosylation , Humans , Lectins/genetics , Mucins/biosynthesis , Mucins/genetics , Phylogeny , Protein Binding , Protein Conformation , Protein Structure, Tertiary , Sialyltransferases/genetics , Substrate Specificity
20.
Glycoconj J ; 33(1): 19-28, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26514868

ABSTRACT

Lectins are carbohydrate binding proteins that are gaining attention as important tools for the identification of specific glycan markers expressed during different stages of the cancer. We earlier reported the purification of a mitogenic lectin from human pathogenic fungus Cephalosporium curvulum (CSL) that has complex sugar specificity when analysed by hapten inhibition assay. In the present study, we report the fine sugar specificity of CSL as determined by glycan array analysis. The results revealed that CSL has exquisite specificity towards core fucosylated N-glycans. Fucosylated trimannosyl core is the basic structure required for the binding of CSL. The presence of fucose in the side chain further enhances the avidity of CSL towards such glycans. The affinity of CSL is drastically reduced towards the non-core fucosylated glycans, in spite of their side chain fucosylation. CSL showed no binding to the tested O-glycans and monosaccharides. These observations suggest the unique specificity of CSL towards core fucosylated N-glycans, which was further validated by binding of CSL to human colon cancer epithelial and hepatocarcinoma cell lines namely HT29 and HepG2, respectively, that are known to express core fucosylated N-glycans, using AOL and LCA as positive controls. LCA and AOL are fucose specific lectins that are currently being used clinically for the diagnosis of hepatocellular carcinomas. Most of the gastrointestinal markers express core fucosylated N-glycans. The high affinity and exclusive specificity of CSL towards α1-6 linkage of core fucosylated glycans compared to other fucose specific lectins, makes it a promising molecule that needs to be further explored for its application in the diagnosis of gastrointestinal cancer.


Subject(s)
Acremonium/chemistry , Fucose/analogs & derivatives , Glucans/metabolism , Lectins/metabolism , Carbohydrate Sequence , Glucans/chemistry , HT29 Cells , Hep G2 Cells , Humans , Molecular Sequence Data , Protein Binding
SELECTION OF CITATIONS
SEARCH DETAIL