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1.
Plant Physiol ; 188(2): 807-815, 2022 02 04.
Article in English | MEDLINE | ID: mdl-34791482

ABSTRACT

G-proteins are molecular on-off switches that are involved in transmitting a variety of extracellular signals to their intracellular targets. In animal and yeast systems, the switch property is encoded through nucleotides: a GDP-bound state is the "off-state" and the GTP-bound state is the "on-state". The G-protein cycle consists of the switch turning on through nucleotide exchange facilitated by a G-protein coupled receptor and the switch turning off through hydrolysis of GTP back to GDP, facilitated by a protein designated REGULATOR OF G SIGNALING 1 (RGS). In plants, G-protein signaling dramatically differs from that in animals and yeast. Despite stringent conservation of the nucleotide binding and catalytic structures over the 1.6 billion years that separate the evolution of plants and animals, genetic and biochemical data indicate that nucleotide exchange is less critical for this switch to operate in plants. Also, the loss of the single RGS protein in Arabidopsis (Arabidopsis thaliana) confers unexpectedly weaker phenotypes consistent with a diminished role for the G cycle, at least under static conditions. However, under dynamic conditions, genetic ablation of RGS in Arabidopsis results in a strong phenotype. We explore explanations to this conundrum by formulating a mathematical model that takes into account the accruing evidence for the indispensable role of phosphorylation in G-protein signaling in plants and that the G-protein cycle is needed to process dynamic signal inputs. We speculate that the plant G-protein cycle and its attendant components evolved to process dynamic signals through signaling modulation rather than through on-off, switch-like regulation of signaling. This so-called change detection may impart greater fitness for plants due to their sessility in a dynamic light, temperature, and pest environment.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/physiology , GTP-Binding Proteins/physiology , Signal Transduction/genetics , Arabidopsis/genetics
2.
Development ; 146(13)2019 06 28.
Article in English | MEDLINE | ID: mdl-31142545

ABSTRACT

The niche controls stem cell self-renewal and differentiation in animal tissues. Although the exocyst is known to be important for protein membrane trafficking and secretion, its role in stem cells and niches has never been reported. Here, this study shows that the exocyst functions in the niche to promote germline stem cell (GSC) progeny differentiation in the Drosophila ovary by directly regulating EGFR membrane trafficking and signaling. Inactivation of exocyst components in inner germarial sheath cells, which form the differentiation niche, causes a severe GSC differentiation defect. The exocyst is required for maintaining niche cells and preventing BMP signaling in GSC progeny by promoting EGFR membrane targeting and signaling through direct association with EGFR. Finally, it is also required for EGFR membrane targeting, recycling and signaling in human cells. Therefore, this study reveals a novel function of the exocyst in niche cells to promote stem cell progeny differentiation by directly controlling EGFR membrane trafficking and signaling in vivo, and also provides important insight into how the niche controls stem cell progeny differentiation at the molecular level.


Subject(s)
Cell Differentiation , Drosophila Proteins/metabolism , ErbB Receptors/metabolism , Germ Cells/cytology , Receptors, Invertebrate Peptide/metabolism , Stem Cell Niche , Stem Cells/physiology , Vesicular Transport Proteins/physiology , Animals , Animals, Genetically Modified , Cell Differentiation/genetics , Cell Membrane/metabolism , Cell Self Renewal/genetics , Cells, Cultured , Drosophila , Drosophila Proteins/physiology , ErbB Receptors/physiology , Female , GTP-Binding Proteins/physiology , Germ Cells/metabolism , HEK293 Cells , HeLa Cells , Humans , Multiprotein Complexes/genetics , Multiprotein Complexes/physiology , Ovary/cytology , Ovary/metabolism , Protein Transport/genetics , Receptors, Invertebrate Peptide/physiology , Stem Cell Niche/genetics , Stem Cells/cytology , Vesicular Transport Proteins/genetics
3.
PLoS Biol ; 17(9): e3000396, 2019 09.
Article in English | MEDLINE | ID: mdl-31532761

ABSTRACT

The canonical model of eukaryotic translation posits that efficient translation initiation increases protein expression and mRNA stability. Contrary to this model, we find that increasing initiation rate can decrease both protein expression and stability of certain mRNAs in the budding yeast Saccharomyces cerevisiae. These mRNAs encode a stretch of polybasic residues that cause ribosome stalling. Our computational modeling predicts that the observed decrease in gene expression at high initiation rates occurs when ribosome collisions at stalls stimulate abortive termination of the leading ribosome or cause endonucleolytic mRNA cleavage. Consistent with this prediction, the collision-associated quality-control factors Asc1 and Hel2 (orthologs of human RACK1 and ZNF598, respectively) decrease gene expression from stall-containing mRNAs only at high initiation rates. Remarkably, hundreds of S. cerevisiae mRNAs that contain ribosome stall sequences also exhibit lower translation efficiency. We propose that inefficient translation initiation allows these stall-containing endogenous mRNAs to escape collision-stimulated reduction in gene expression.


Subject(s)
Peptide Chain Initiation, Translational , RNA, Messenger/physiology , Ribosomes/physiology , Adaptor Proteins, Signal Transducing/physiology , GTP-Binding Proteins/physiology , Saccharomyces cerevisiae , Saccharomyces cerevisiae Proteins/physiology , Ubiquitin-Protein Ligases/physiology
4.
PLoS Comput Biol ; 17(9): e1009364, 2021 09.
Article in English | MEDLINE | ID: mdl-34591840

ABSTRACT

In behavioral learning, reward-related events are encoded into phasic dopamine (DA) signals in the brain. In particular, unexpected reward omission leads to a phasic decrease in DA (DA dip) in the striatum, which triggers long-term potentiation (LTP) in DA D2 receptor (D2R)-expressing spiny-projection neurons (D2 SPNs). While this LTP is required for reward discrimination, it is unclear how such a short DA-dip signal (0.5-2 s) is transferred through intracellular signaling to the coincidence detector, adenylate cyclase (AC). In the present study, we built a computational model of D2 signaling to determine conditions for the DA-dip detection. The DA dip can be detected only if the basal DA signal sufficiently inhibits AC, and the DA-dip signal sufficiently disinhibits AC. We found that those two requirements were simultaneously satisfied only if two key molecules, D2R and regulators of G protein signaling (RGS) were balanced within a certain range; this balance has indeed been observed in experimental studies. We also found that high level of RGS was required for the detection of a 0.5-s short DA dip, and the analytical solutions for these requirements confirmed their universality. The imbalance between D2R and RGS is associated with schizophrenia and DYT1 dystonia, both of which are accompanied by abnormal striatal LTP. Our simulations suggest that D2 SPNs in patients with schizophrenia and DYT1 dystonia cannot detect short DA dips. We finally discussed that such psychiatric and movement disorders can be understood in terms of the imbalance between D2R and RGS.


Subject(s)
Dopamine/physiology , Models, Neurological , Receptors, Dopamine D2/physiology , Adenylyl Cyclases/physiology , Animals , Computational Biology , Corpus Striatum/physiology , Dystonia Musculorum Deformans/physiopathology , GTP-Binding Proteins/physiology , Humans , Learning/physiology , Long-Term Potentiation/physiology , Mental Disorders/physiopathology , Movement Disorders/physiopathology , Neurons/physiology , Reward , Schizophrenia/physiopathology , Signal Transduction/physiology
5.
Proc Natl Acad Sci U S A ; 116(47): 23760-23771, 2019 11 19.
Article in English | MEDLINE | ID: mdl-31676548

ABSTRACT

Elimination of dysfunctional mitochondria via mitophagy is essential for cell survival and neuronal functions. But, how impaired mitophagy participates in tissue-specific vulnerability in the brain remains unclear. Here, we find that striatal-enriched protein, Rhes, is a critical regulator of mitophagy and striatal vulnerability in brain. In vivo interactome and density fractionation reveal that Rhes coimmunoprecipitates and cosediments with mitochondrial and lysosomal proteins. Live-cell imaging of cultured striatal neuronal cell line shows Rhes surrounds globular mitochondria, recruits lysosomes, and ultimately degrades mitochondria. In the presence of 3-nitropropionic acid (3-NP), an inhibitor of succinate dehydrogenase, Rhes disrupts mitochondrial membrane potential (ΔΨ m ) and promotes excessive mitophagy and cell death. Ultrastructural analysis reveals that systemic injection of 3-NP in mice promotes globular mitochondria, accumulation of mitophagosomes, and striatal lesion only in the wild-type (WT), but not in the Rhes knockout (KO), striatum, suggesting that Rhes is critical for mitophagy and neuronal death in vivo. Mechanistically, Rhes requires Nix (BNIP3L), a known receptor of mitophagy, to disrupt ΔΨ m and promote mitophagy and cell death. Rhes interacts with Nix via SUMO E3-ligase domain, and Nix depletion totally abrogates Rhes-mediated mitophagy and cell death in the cultured striatal neuronal cell line. Finally, we find that Rhes, which travels from cell to cell via tunneling nanotube (TNT)-like cellular protrusions, interacts with dysfunctional mitochondria in the neighboring cell in a Nix-dependent manner. Collectively, Rhes is a major regulator of mitophagy via Nix, which may determine striatal vulnerability in the brain.


Subject(s)
GTP-Binding Proteins/physiology , Membrane Proteins/metabolism , Mitochondrial Proteins/metabolism , Mitophagy/physiology , Animals , Cell Line , Corpus Striatum/metabolism , GTP-Binding Proteins/metabolism , Lysosomes/metabolism , Mice , Mice, Knockout , Mitochondria/metabolism , Mitophagy/drug effects , Nitro Compounds/pharmacology , Propionates/pharmacology
6.
Infect Immun ; 89(11): e0020221, 2021 10 15.
Article in English | MEDLINE | ID: mdl-34338548

ABSTRACT

Gamma interferon (IFN-γ)-induced immunity-related GTPases (IRGs) confer cell-autonomous immunity to the intracellular protozoan pathogen Toxoplasma gondii. Effector IRGs are loaded onto the Toxoplasma-containing parasitophorous vacuole (PV), where they recruit ubiquitin ligases, ubiquitin-binding proteins, and IFN-γ-inducible guanylate-binding proteins (Gbps), prompting PV lysis and parasite destruction. Host cells lacking the regulatory IRGs Irgm1 and Irgm3 fail to load effector IRGs, ubiquitin, and Gbps onto the PV and are consequently defective for cell-autonomous immunity to Toxoplasma. However, the role of the third regulatory IRG, Irgm2, in cell-autonomous immunity to Toxoplasma has remained unexplored. Here, we report that Irgm2 unexpectedly plays a limited role in the targeting of effector IRGs, ubiquitin, and Gbps to the Toxoplasma PV. Instead, Irgm2 is instrumental in the decoration of PVs with γ-aminobutyric acid receptor-associated protein-like 2 (GabarapL2). Cells lacking Irgm2 are as defective for cell-autonomous host defense to Toxoplasma as pan-Irgm-/- cells lacking all three Irgm proteins, and Irgm2-/- mice succumb to Toxoplasma infections as readily as pan-Irgm-/- mice. These findings demonstrate that, relative to Irgm1 and Irgm3, Irgm2 plays a distinct but critically important role in host resistance to Toxoplasma.


Subject(s)
GTP Phosphohydrolases/physiology , GTP-Binding Proteins/physiology , Toxoplasmosis/immunology , Animals , Apoptosis Regulatory Proteins/physiology , Mice , Mice, Inbred C57BL , Microtubule-Associated Proteins/physiology , Ubiquitin/physiology , Vacuoles/physiology
7.
J Neurosci ; 39(8): 1457-1470, 2019 02 20.
Article in English | MEDLINE | ID: mdl-30559150

ABSTRACT

Dynamic regulation of synaptic transmission at cortical inputs to the dorsal striatum is considered critical for flexible and efficient action learning and control. Presynaptic mechanisms governing the properties and plasticity of glutamate release from these inputs are not fully understood, and the corticostriatal synaptic processes that support normal action learning and control remain unclear. Here we show in male and female mice that conditional deletion of presynaptic proteins RIM1αß (RIM1) from excitatory cortical neurons impairs corticostriatal synaptic transmission in the dorsolateral striatum. Key forms of presynaptic G-protein-coupled receptor-mediated short- and long-term striatal plasticity are spared following RIM1 deletion. Conditional RIM1 KO mice show heightened novelty-induced locomotion and impaired motor learning on the accelerating rotarod. They further show heightened self-paced instrumental responding for food and impaired learning of a habitual instrumental response strategy. Together, these findings reveal a selective role for presynaptic RIM1 in neurotransmitter release at prominent basal ganglia synapses, and provide evidence that RIM1-dependent processes help to promote the refinement of skilled actions, constrain goal-directed behaviors, and support the learning and use of habits.SIGNIFICANCE STATEMENT Our daily functioning hinges on the ability to flexibly and efficiently learn and control our actions. How the brain encodes these capacities is unclear. Here we identified a selective role for presynaptic proteins RIM1αß in controlling glutamate release from cortical inputs to the dorsolateral striatum, a brain structure critical for action learning and control. Behavioral analysis of mice with restricted genetic deletion of RIM1αß further revealed roles for RIM1αß-dependent processes in the learning and refinement of motor skills and the balanced expression of goal-directed and habitual actions.


Subject(s)
Cerebral Cortex/physiology , Corpus Striatum/physiology , GTP-Binding Proteins/physiology , Nerve Tissue Proteins/physiology , Animals , Basal Ganglia/physiology , Conditioning, Operant/physiology , Exploratory Behavior/physiology , Female , GTP-Binding Proteins/deficiency , GTP-Binding Proteins/genetics , Glutamic Acid/physiology , Habits , Learning/physiology , Learning Disabilities/genetics , Learning Disabilities/physiopathology , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Motor Skills/physiology , Nerve Tissue Proteins/deficiency , Nerve Tissue Proteins/genetics , Neuronal Plasticity , Patch-Clamp Techniques , Pyramidal Cells/physiology , Receptors, G-Protein-Coupled/physiology , Rotarod Performance Test , Synaptic Transmission/physiology
8.
J Neurosci ; 39(3): 503-518, 2019 01 16.
Article in English | MEDLINE | ID: mdl-30446532

ABSTRACT

Ventral tegmental area (VTA) dopamine (DA) neurons perform diverse functions in motivation and cognition, but their precise roles in addiction-related behaviors are still debated. Here, we targeted VTA DA neurons for bidirectional chemogenetic modulation during specific tests of cocaine reinforcement, demand, and relapse-related behaviors in male rats, querying the roles of DA neuron inhibitory and excitatory G-protein signaling in these processes. Designer receptor stimulation of Gq signaling, but not Gs signaling, in DA neurons enhanced cocaine seeking via functionally distinct projections to forebrain limbic regions. In contrast, engaging inhibitory Gi/o signaling in DA neurons blunted the reinforcing and priming effects of cocaine, reduced stress-potentiated reinstatement, and altered behavioral strategies for cocaine seeking and taking. Results demonstrate that DA neurons play several distinct roles in cocaine seeking, depending on behavioral context, G-protein-signaling cascades, and DA neuron efferent targets, highlighting their multifaceted roles in addiction.SIGNIFICANCE STATEMENT G-protein-coupled receptors are crucial modulators of ventral tegmental area (VTA) dopamine neuron activity, but how this metabotropic signaling impacts the complex roles of dopamine in reward and addiction is poorly understood. Here, we bidirectionally modulate dopamine neuron G-protein signaling with DREADDs (designer receptors exclusively activated by designer drugs) during a variety of cocaine-seeking behaviors, revealing nuanced, pathway-specific roles in cocaine reward, effortful seeking, and relapse-like behaviors. Gq and Gs stimulation activated dopamine neurons, but only Gq stimulation robustly enhanced cocaine seeking. Gi/o inhibitory signaling reduced some, but not all, types of cocaine seeking. Results show that VTA dopamine neurons modulate numerous distinct aspects of cocaine addiction- and relapse-related behaviors, and point to potential new approaches for intervening in these processes to treat addiction.


Subject(s)
Cocaine-Related Disorders/genetics , Cocaine-Related Disorders/physiopathology , Dopaminergic Neurons/drug effects , Ventral Tegmental Area/physiopathology , Animals , Behavior, Animal , Cocaine-Related Disorders/psychology , Drug-Seeking Behavior , GTP-Binding Proteins/physiology , Limbic System/drug effects , Male , Motor Activity/drug effects , Prosencephalon/drug effects , Rats , Rats, Transgenic , Recurrence , Reward , Self Administration , Signal Transduction/drug effects , Stress, Psychological/psychology , Ventral Tegmental Area/drug effects
9.
J Virol ; 93(12)2019 06 15.
Article in English | MEDLINE | ID: mdl-30918079

ABSTRACT

In previous research, a 27.8-kDa protein in flounder Paralichthys olivaceus gill (FG) cells was identified as a putative cellular receptor (27.8R), which mediated lymphocystis disease virus (LCDV) infection via interaction with a 32-kDa viral attachment protein (VAP) of LCDV, and monoclonal antibodies (MAbs) against 27.8R and 32-kDa VAP were developed. In this study, the 27.8R was identified as voltage-dependent anion channel protein 2 (VDAC2) and receptor of activated protein C kinase 1 (RACK1) of flounder. Recombinant VDAC2 (rVDAC2) and RACK1 (rRACK1) were obtained by prokaryotic expression, and rabbit anti-VDAC2/RACK1 polyclonal antibodies were prepared. The rVDAC2, rRACK1, and 27.8-kDa proteins in FG cells were recognized by anti-27.8R MAbs and anti-VDAC2/RACK1 polyclonal antibodies simultaneously. Preincubation of FG cells with anti-VDAC2/RACK1 polyclonal antibodies significantly decreased the percentages of LCDV-infected cells and LCDV copy numbers, blocked virus infection, and delayed the development of cytopathic effect. The mRNA expressions of VDAC2 and RACK1 in FG cells were upregulated to maximum levels 12 h and 48 h after LCDV infection, respectively. VDAC2/RACK1 knockdown through short interfering RNA (siRNA) significantly reduced VDAC2/RACK1 expression and LCDV copy numbers in FG cells compared with negative controls, while VDAC2/RACK1 expression on LCDV-nonpermissive epithelial papillosum cells (EPCs) conferred susceptibility to LCDV infection, indicating the VDAC2 and RACK1 were sufficient to allow LCDV entry and infection. All these results collectively showed that VDAC2 and RACK1 function as receptors for LCDV entry and infection.IMPORTANCE Lymphocystis disease virus (LCDV) is the causative agent of lymphocystis disease in fish, which has caused huge economic losses to the aquaculture industry worldwide, but the molecular mechanism underlying the LCDV-host interaction remains unclear. Here, the 27.8-kDa putative cellular receptor for LCDV was identified as voltage-dependent anion channel protein 2 (VDAC2) and receptor of activated protein C kinase 1 (RACK1), and our results revealed that VDAC2 and RACK1 expression was sufficient to allow LCDV entry and that they are functional receptors that initiate LCDV infection for the first time, which leads to a better understanding of the molecular mechanism underlying LCDV infection and virus-host interactions.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , GTP-Binding Proteins/metabolism , Iridoviridae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Voltage-Dependent Anion Channel 2/metabolism , Adaptor Proteins, Signal Transducing/physiology , Animals , Antibodies, Monoclonal/immunology , DNA Virus Infections/virology , Fish Diseases/virology , Flounder , GTP-Binding Proteins/physiology , Gills/metabolism , Iridoviridae/pathogenicity , Receptors, Virus/metabolism , Receptors, Virus/physiology , Saccharomyces cerevisiae Proteins/physiology , Viral Proteins/genetics , Virus Replication/physiology , Voltage-Dependent Anion Channel 2/physiology
10.
Plant Physiol ; 179(3): 1159-1175, 2019 03.
Article in English | MEDLINE | ID: mdl-30622152

ABSTRACT

Heterotrimeric G-proteins influence almost all aspects of plant growth, development, and responses to biotic and abiotic stresses in plants, likely via their interaction with specific effectors. However, the identity of such effectors and their mechanism of action are mostly unknown. While investigating the roles of different G-protein subunits in modulating the oil content in Camelina (Camelina sativa), an oil seed crop, we uncovered a role of Gß proteins in controlling anisotropic cell expansion. Knockdown of Gß genes causes reduced longitudinal and enhanced transverse expansion, resulting in altered cell, tissue, and organ shapes in transgenic plants during vegetative and reproductive development. These plants also exhibited substantial changes in their fatty acid and phospholipid profiles, which possibly leads to the increased oil content of the transgenic seeds. This increase is potentially caused by the direct interaction of Gß proteins with a specific patatin-like phospholipase, pPLAIIIδ. Camelina plants with suppressed Gß expression exhibit higher lipase activity, and show phenotypes similar to plants overexpressing pPLAIIIδ, suggesting that the Gß proteins are negative regulators of pPLAIIIδ. These results reveal interactions between the G-protein-mediated and lipid signaling/metabolic pathways, where specific phospholipases may act as effectors that control key developmental and environmental responses of plants.


Subject(s)
Brassicaceae/metabolism , GTP-Binding Proteins/physiology , Lipid Metabolism , Plant Proteins/physiology , Brassicaceae/cytology , Brassicaceae/growth & development , Cell Proliferation/genetics , Cell Shape , Fatty Acids/metabolism , GTP-Binding Proteins/genetics , GTP-Binding Proteins/metabolism , Phenotype , Plant Oils/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism
11.
FASEB J ; 33(1): 750-762, 2019 01.
Article in English | MEDLINE | ID: mdl-30020832

ABSTRACT

C-peptide has a beneficial effect against diabetic complications, but its role in hyperglycemia-induced metastasis is unknown. We investigated hyperglycemia-mediated pulmonary vascular leakage and metastasis and C-peptide inhibition of these molecular events using human pulmonary microvascular endothelial cells (HPMVECs) and streptozotocin-induced diabetic mice. VEGF, which is elevated in the lungs of diabetic mice, activated transglutaminase 2 (TGase2) in HPMVECs by sequential elevation of intracellular Ca2+ and reactive oxygen species (ROS) levels. VEGF also induced vascular endothelial (VE)-cadherin disruption and increased the permeability of endothelial cells, both of which were prevented by the TGase inhibitors monodansylcadaverine and cystamine or TGM2-specific small interfering RNA. C-peptide prevented VEGF-induced VE-cadherin disruption and endothelial cell permeability through inhibiting ROS-mediated activation of TGase2. C-peptide supplementation inhibited hyperglycemia-induced ROS generation and TGase2 activation and prevented vascular leakage and metastasis in the lungs of diabetic mice. The role of TGase2 in hyperglycemia-induced pulmonary vascular leakage and metastasis was further demonstrated in diabetic Tgm2-/- mice. These findings demonstrate that hyperglycemia induces metastasis, and C-peptide prevents the hyperglycemia-induced metastasis in the lungs of diabetic mice by inhibiting VEGF-induced TGase2 activation and subsequent vascular leakage.-Jeon, H.-Y., Lee, Y.-J., Kim, Y.-S., Kim, S.-Y., Han, E.-T., Park, W. S., Hong, S.-H., Kim, Y.-M., Ha, K.-S. Proinsulin C-peptide prevents hyperglycemia-induced vascular leakage and metastasis of melanoma cells in the lungs of diabetic mice.


Subject(s)
C-Peptide/pharmacology , Diabetes Mellitus, Experimental/physiopathology , Hyperglycemia/complications , Lung Neoplasms/drug therapy , Melanoma, Experimental/drug therapy , Neovascularization, Pathologic/drug therapy , Animals , Apoptosis , Female , GTP-Binding Proteins/physiology , Human Umbilical Vein Endothelial Cells , Humans , Hyperglycemia/metabolism , Hyperglycemia/pathology , Lung Neoplasms/metabolism , Lung Neoplasms/secondary , Male , Melanoma, Experimental/metabolism , Melanoma, Experimental/pathology , Mice , Mice, Inbred C57BL , Mice, Knockout , Neovascularization, Pathologic/metabolism , Neovascularization, Pathologic/pathology , Protein Glutamine gamma Glutamyltransferase 2 , Reactive Oxygen Species/metabolism , Transglutaminases/physiology , Vascular Endothelial Growth Factor A/metabolism
12.
PLoS Comput Biol ; 15(10): e1007193, 2019 10.
Article in English | MEDLINE | ID: mdl-31589600

ABSTRACT

Guanylate binding proteins (GBPs) belong to the dynamin-related superfamily and exhibit various functions in the fight against infections. The functions of the human guanylate binding protein 1 (hGBP1) are tightly coupled to GTP hydrolysis and dimerization. Despite known crystal structures of the hGBP1 monomer and GTPase domain dimer, little is known about the dynamics of hGBP1. To gain a mechanistic understanding of hGBP1, we performed sub-millisecond multi-resolution molecular dynamics simulations of both the hGBP1 monomer and dimer. We found that hGBP1 is a highly flexible protein that undergoes a hinge motion similar to the movements observed for other dynamin-like proteins. Another large-scale motion was observed for the C-terminal helix α13, providing a molecular view for the α13-α13 distances previously reported for the hGBP1 dimer. Most of the loops of the GTPase domain were found to be flexible, revealing why GTP binding is needed for hGBP1 dimerization to occur.


Subject(s)
Computational Biology/methods , GTP-Binding Proteins/physiology , Algorithms , Binding Sites , Computer Simulation , Dimerization , Dynamins , GTP Phosphohydrolases/metabolism , Guanosine Triphosphate/metabolism , Humans , Kinetics , Molecular Dynamics Simulation , Motion , Protein Binding , Protein Interaction Domains and Motifs/physiology , Software
13.
Inflamm Res ; 69(9): 925-935, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32500186

ABSTRACT

OBJECTIVE AND DESIGN: Celiac disease (CD) is an intestinal inflammatory disorder of the small intestine. Gliadins are a component of gluten and there are three main types (α, γ, and ω). Recent studies indicate that gliadin peptides are able to activate an innate immune response. IL15 is a major mediator of the innate immune response and is involved in the early alteration of CD mucosa. The chitinase molecules are highly expressed by the innate immune cells during the inflammatory processes. MATERIAL OR SUBJECTS: We analyzed several microarray datasets of PBMCs and duodenum biopsies of CD patients and healthy control subjects (HCs). We verified the modulation CHI3L1 in CD patients and correlated the expression levels to the IL15, IL15Rα, TGM2, IFNγ, and IFNGR1/2. Duodenal biopsy samples belonged to nine active and nine treated children patients (long-term effects of gliadin), and 17 adult CD patients and 10 adults HCs. We also selected 169 samples of PBMCs from 127 CD patients on adherence to a gluten-free diet (GFD) for at least 2 years and 44 HCs. RESULTS: Our analysis showed that CHI3L1 and IL15Rα were significantly upregulated in adult and children's celiac duodenum biopsies. In addition, the two genes were correlated significantly both in children than in adults CD duodenum biopsies. No significant modulation was observed in PBMCs of adult CD patients compared to the HCs. The correlation analysis of the expression levels of CHI3L1 and IL15Rα compared to TGM showed significant values both in adults and in children duodenal biopsies. Furthermore, the IFNγ expression levels were positively correlated with CHI3L1 and IL15Rα. Receiver operating characteristic (ROC) analysis confirmed the diagnostic ability of CHI3L1 and IL15Rα to discriminate CD from HCs. CONCLUSION: Our data suggest a role for CHI3L1 underlying the pathophysiology of CD and represent a starting point aiming to inspire new investigation that proves the possible use of CHI3L1 as a diagnostic factor and therapeutic target.


Subject(s)
Celiac Disease/immunology , Chitinase-3-Like Protein 1/physiology , Duodenum/immunology , GTP-Binding Proteins/physiology , Interleukin-15 Receptor alpha Subunit/physiology , Transglutaminases/physiology , Adult , Biopsy , Celiac Disease/etiology , Child , Chitinase-3-Like Protein 1/analysis , Chitinase-3-Like Protein 1/genetics , Duodenum/enzymology , Duodenum/pathology , Humans , Interleukin-15 Receptor alpha Subunit/analysis , Interleukin-15 Receptor alpha Subunit/genetics , Protein Glutamine gamma Glutamyltransferase 2
14.
Arterioscler Thromb Vasc Biol ; 39(8): 1602-1613, 2019 08.
Article in English | MEDLINE | ID: mdl-31189431

ABSTRACT

OBJECTIVE: The early embryo implantation is characterized by enhanced uterine vascular permeability at the site of blastocyst attachment, followed by extracellular-matrix remodeling and angiogenesis. Two TG (transglutaminase) isoenzymes, TG2 (tissue TG) and FXIII (factor XIII), catalyze covalent cross-linking of the extracellular-matrix. However, their specific role during embryo implantation is not fully understood. Approach and Results: For mapping the distribution as well as the enzymatic activities of TG2 and FXIII towards blood-borne and resident extracellular-matrix substrates, we synthetized selective and specific low molecular weight substrate analogs for each of the isoenzymes. The implantation sites were challenged by genetically modifying the trophoblast cells in the outer layer of blastocysts, to either overexpress or deplete TG2 or FXIII, and the angiogenic response was studied by dynamic contrast-enhanced-magnetic resonance imaging. Dynamic contrast-enhanced-magnetic resonance imaging revealed a decrease in the permeability of decidual vasculature surrounding embryos in which FXIII were overexpressed in trophoblast cell. Reduction in decidual blood volume fraction was demonstrated when either FXIII or TG2 were overexpressed in embryonic trophoblast cell and was elevated when trophoblast cell was depleted of FXIII. These results were corroborated by histological analysis. CONCLUSIONS: In this study, we report on the isoenzyme-specific roles of TG2 and FXIII during the early days of mouse pregnancy and further reveal their involvement in decidual angiogenesis. Our results reveal an important magnetic resonance imaging-detectable function of embryo-derived TG2 and FXIII on regulating maternal angiogenesis during embryo implantation in mice.Visual Overview: An online visual overview is available for this article.


Subject(s)
Embryo Implantation/physiology , Factor XIII/physiology , GTP-Binding Proteins/physiology , Magnetic Resonance Imaging/methods , Neovascularization, Physiologic/physiology , Transglutaminases/physiology , Animals , Female , Fibrinogen/physiology , Mice , Pregnancy , Protein Glutamine gamma Glutamyltransferase 2
15.
Biochemistry (Mosc) ; 85(10): 1159-1168, 2020 Oct.
Article in English | MEDLINE | ID: mdl-33202201

ABSTRACT

Type 2 transglutaminase (TG2) is a multifunctional protein involved in various biological processes playing a key regulatory role in cell homeostasis such as cell death and autophagy. New evidence is emerging that support an important role of autophagy in regulating normal hematopoiesis. Prompted by these findings, in this study we investigated in vivo involvement of TG2 in mouse hematopoiesis under normal or nutrient deprivation conditions. We found that the number and rate of differentiation of bone marrow hematopoietic stem cell was decreased in the TG2 knockout mice. We present evidence showing that these effects on hematopoietic system are very likely due to the TG2-dependent impairment of autophagy. In fact, stimulation of autophagy by starvation is able to rescue the block of the differentiation of stem cells progenitors in the TG2 KO mice. It was also shown that the RhoA/ERK½ pathway, known to be essential for regulation of the bone marrow progenitor cells homeostasis, was significantly impaired in the absence of TG2. Hence, this study expanded our knowledge about TG2 discovering a role of this enzyme in regulation of hematopoiesis.


Subject(s)
Autophagy , GTP-Binding Proteins/physiology , Hematopoietic Stem Cells , Transglutaminases/physiology , Animals , Cell Differentiation , Cells, Cultured , Female , Hematopoiesis , Hematopoietic Stem Cells/cytology , Hematopoietic Stem Cells/metabolism , MAP Kinase Signaling System , Mice , Mice, Inbred C57BL , Mice, Knockout , Protein Glutamine gamma Glutamyltransferase 2
16.
Nucleic Acids Res ; 46(4): 1565-1583, 2018 02 28.
Article in English | MEDLINE | ID: mdl-29390138

ABSTRACT

Modified uridine containing taurine, 5-taurinomethyluridine (τm5U), is found at the anticodon first position of mitochondrial (mt-)transfer RNAs (tRNAs). Previously, we reported that τm5U is absent in mt-tRNAs with pathogenic mutations associated with mitochondrial diseases. However, biogenesis and physiological role of τm5U remained elusive. Here, we elucidated τm5U biogenesis by confirming that 5,10-methylene-tetrahydrofolate and taurine are metabolic substrates for τm5U formation catalyzed by MTO1 and GTPBP3. GTPBP3-knockout cells exhibited respiratory defects and reduced mitochondrial translation. Very little τm5U34 was detected in patient's cells with the GTPBP3 mutation, demonstrating that lack of τm5U results in pathological consequences. Taurine starvation resulted in downregulation of τm5U frequency in cultured cells and animal tissues (cat liver and flatfish). Strikingly, 5-carboxymethylaminomethyluridine (cmnm5U), in which the taurine moiety of τm5U is replaced with glycine, was detected in mt-tRNAs from taurine-depleted cells. These results indicate that tRNA modifications are dynamically regulated via sensing of intracellular metabolites under physiological condition.


Subject(s)
RNA, Transfer/metabolism , Taurine/deficiency , Uridine/analogs & derivatives , Animals , Carrier Proteins/physiology , Cats , Child, Preschool , Female , GTP-Binding Proteins/genetics , GTP-Binding Proteins/physiology , HEK293 Cells , HeLa Cells , Humans , Mitochondria/metabolism , Mitochondrial Diseases/genetics , RNA, Transfer/chemistry , RNA-Binding Proteins , Uridine/biosynthesis
17.
Int J Mol Sci ; 21(19)2020 Sep 24.
Article in English | MEDLINE | ID: mdl-32987815

ABSTRACT

ROP (Rho-like GTPases from plants) GTPases are polarly localized key regulators of polar growth in pollen tubes and other cells in plants. However, how ROP GTPases are regulated and how they control polar growth remains to be fully understood. To gain new insights into ROP-dependent mechanisms underlying polar cell growth, we characterized the interactome of ROP1 GTPase that controls Arabidopsis pollen tube (PT) tip growth, an extreme form of polar cell growth. We established an efficient method for culturing Arabidopsis pollen tubes in liquid medium, which was used for immunoprecipitation/mass spectrometry-based identification of ROP1-associated proteins. A total of 654 candidates were isolated from the ROP1 interactome in Arabidopsis pollen tubes, and GO (Gene Ontology) classification and pathway analysis revealed multiple uncharacterized ROP1-dependent processes including translation, cell wall modification, post transcriptional modification, and ion homeostasis, in addition to known ROP1-dependent pathways. The ROP1-interactome data was further supported by the co-expression of the candidate interactors in highly mature pollen with PT germination and growth defects being discovered in 25% (8/32) of the candidate mutant genes. Taken together, our work uncovers valuable information for the identification and functional elucidation of ROP-associated proteins in the regulation of polar growth, and provides a reliable reference to identify critical regulators of polar cell growth in the future.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/physiology , GTP-Binding Proteins/physiology , Pollen Tube/physiology , Gene Expression Regulation, Plant , Germination , Proteome/physiology , Signal Transduction , Tissue Culture Techniques
18.
Dev Biol ; 440(1): 1-12, 2018 08 01.
Article in English | MEDLINE | ID: mdl-29679561

ABSTRACT

Stem cells must maintain proliferation during tissue development, repair and homeostasis, yet avoid tumor formation. In Drosophila, neural stem cells (neuroblasts) maintain proliferation during embryonic and larval development and terminate cell cycle during metamorphosis. An important question for understanding how tissues are generated and maintained is: what regulates stem cell proliferation versus differentiation? We performed a genetic screen which identified nucleostemin 3 (ns3) as a gene required to maintain neuroblast proliferation. ns3 is evolutionarily conserved with yeast and human Lsg1, which encode putative GTPases and are essential for organism growth and viability. We found NS3 is cytoplasmic and it is required to retain the cell cycle repressor Prospero in neuroblast cytoplasm via a Ran-independent pathway. NS3 is also required for proper neuroblast cell polarity and asymmetric cell division. Structure-function analysis further shows that the GTP-binding domain and acidic domain are required for NS3 function in neuroblast proliferation. We conclude NS3 has novel roles in regulating neuroblast cell polarity and proliferation.


Subject(s)
Drosophila Proteins/genetics , Drosophila Proteins/metabolism , GTP-Binding Proteins/genetics , GTP-Binding Proteins/metabolism , Neural Stem Cells/metabolism , Animals , Cell Cycle/physiology , Cell Cycle Proteins/metabolism , Cell Differentiation/physiology , Cell Division/physiology , Cell Polarity/physiology , Cell Proliferation/physiology , Drosophila Proteins/physiology , Drosophila melanogaster/embryology , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , GTP-Binding Proteins/physiology , Larva/metabolism , Neural Stem Cells/physiology , Neurogenesis , Neurons/metabolism
19.
J Physiol ; 597(2): 631-651, 2019 01.
Article in English | MEDLINE | ID: mdl-30418666

ABSTRACT

KEY POINTS: Medullo-spinal CSF contacting neurones (CSF-cNs) located around the central canal are conserved in all vertebrates and suggested to be a novel sensory system intrinsic to the CNS. CSF-cNs receive GABAergic inhibitory synaptic inputs involving ionotropic GABAA receptors, but the contribution of metabotropic GABAB receptors (GABAB -Rs) has not yet been studied. Here, we indicate that CSF-cNs express functional GABAB -Rs that inhibit postsynaptic calcium channels but fail to activate inhibitory potassium channel of the Kir3-type. We further show that GABAB -Rs localise presynaptically on GABAergic and glutamatergic synaptic inputs contacting CSF-cNs, where they inhibit the release of GABA and glutamate. Our data are the first to address the function of GABAB -Rs in CSF-cNs and show that on the presynaptic side they exert a classical synaptic modulation whereas at the postsynaptic level they have an atypical action by modulating calcium signalling without inducing potassium-dependent inhibition. ABSTRACT: Medullo-spinal neurones that contact the cerebrospinal fluid (CSF-cNs) are a population of evolutionary conserved cells located around the central canal. CSF-cN activity has been shown to be regulated by inhibitory synaptic inputs involving ionotropic GABAA receptors, but the contribution of the G-protein coupled GABAB receptors has not yet been studied. Here, we used a combination of immunofluorescence, electrophysiology and calcium imaging to investigate the expression and function of GABAB -Rs in CSF-cNs of the mouse brainstem. We found that CSF-cNs express GABAB -Rs, but their selective activation failed to induce G protein-coupled inwardly rectifying potassium (GIRK) currents. Instead, CSF-cNs express primarily N-type voltage-gated calcium (CaV 2.2) channels, and GABAB -Rs recruit Gßγ subunits to inhibit CaV channel activity induced by membrane voltage steps or under physiological conditions by action potentials. Moreover, using electrical stimulation, we indicate that GABAergic inhibitory (IPSCs) and excitatory glutamatergic (EPSCs) synaptic currents can be evoked in CSF-cNs showing that mammalian CSF-cNs are also under excitatory control by glutamatergic synaptic inputs. We further demonstrate that baclofen reversibly reduced the amplitudes of both IPSCs and EPSCs evoked in CSF-cNs through a presynaptic mechanism of regulation. In summary, these results are the first to demonstrate the existence of functional postsynaptic GABAB -Rs in medullar CSF-cNs, as well as presynaptic GABAB auto- and heteroreceptors regulating the release of GABA and glutamate. Remarkably, postsynaptic GABAB -Rs associate with CaV but not GIRK channels, indicating that GABAB -Rs function as a calcium signalling modulator without GIRK-dependent inhibition in CSF-cNs.


Subject(s)
Brain Stem/physiology , Calcium/physiology , Cerebrospinal Fluid/physiology , Receptors, GABA-B/physiology , Animals , Calcium Channels, N-Type/physiology , Female , GTP-Binding Proteins/physiology , Male , Mice, Inbred C57BL , Neurons/physiology , Potassium Channels/physiology
20.
Plant Mol Biol ; 100(6): 635-645, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31147815

ABSTRACT

KEY MESSAGE: Rice WSL6 is involved in chloroplast ribosome biogenesis and is essential for early chloroplast development. Construction of the genetic translation system is a prerequisite for chloroplast development in plants. However, the molecular mechanism underlying this process is largely unknown. Here, we isolated a white stripe leaf6 (wsl6) mutant in rice. The mutant seedlings displayed white-striped leaves that were more severe under low-temperature conditions. Transmission electron microscopy analysis showed that the wsl6 mutant was defective in early chloroplast development. Map-based cloning revealed that WSL6 encodes an Era-type guanosine-5'-triphosphate (GTP)-binding protein located in chloroplasts. Immunoblotting and quantitative real-time polymerase chain reaction (qRT-PCR) analyses demonstrated an absence of 70S ribosomes in wsl6 chloroplasts. Further research showed that WSL6 binds to the 16S ribosomal RNA (rRNA) subunit of chloroplast ribosome 30S. In summary, these results show that WSL6 is essential for chloroplast ribosome biogenesis during early chloroplast development in rice.


Subject(s)
Chloroplasts/physiology , GTP-Binding Proteins/metabolism , Oryza/genetics , Plant Proteins/genetics , Cloning, Molecular , GTP-Binding Proteins/physiology , Gene Expression Regulation, Plant , Genetic Complementation Test , Microscopy, Electron, Transmission , Mutation , Oryza/physiology , Phenotype , Pigmentation , Plant Proteins/physiology , Protein Biosynthesis , RNA, Ribosomal, 16S/genetics , Temperature
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