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1.
Cell ; 137(3): 433-44, 2009 May 01.
Article in English | MEDLINE | ID: mdl-19410541

ABSTRACT

Enveloped viruses that rely on a low pH-dependent step for entry initiate infection by fusing with acidic endosomes, whereas the entry sites for pH-independent viruses, such as HIV-1, have not been defined. These viruses have long been assumed to fuse directly with the plasma membrane. Here we used population-based measurements of the viral content delivery into the cytosol and time-resolved imaging of single viruses to demonstrate that complete HIV-1 fusion occurred in endosomes. In contrast, viral fusion with the plasma membrane did not progress beyond the lipid mixing step. HIV-1 underwent receptor-mediated internalization long before endosomal fusion, thus minimizing the surface exposure of conserved viral epitopes during fusion and reducing the efficacy of inhibitors targeting these epitopes. We also show that, strikingly, endosomal fusion is sensitive to a dynamin inhibitor, dynasore. These findings imply that HIV-1 infects cells via endocytosis and envelope glycoprotein- and dynamin-dependent fusion with intracellular compartments.


Subject(s)
Dynamins/metabolism , Endocytosis , HIV Infections/virology , HIV-1/physiology , Virus Internalization , Cell Membrane/metabolism , Cell Membrane/virology , Cells, Cultured , Clathrin/metabolism , Cytosol/metabolism , Cytosol/ultrastructure , Cytosol/virology , Dynamins/antagonists & inhibitors , HIV Envelope Protein gp41/chemistry , HIV Envelope Protein gp41/metabolism , HIV Infections/metabolism , HIV-1/chemistry , HIV-1/ultrastructure , Humans , Hydrazones/metabolism , Membrane Lipids/metabolism , Microscopy, Confocal , Protein Conformation , Protein Transport
2.
Mutagenesis ; 37(2): 155-163, 2022 05 04.
Article in English | MEDLINE | ID: mdl-35443032

ABSTRACT

An association between proper chromosome segregation and intact mitochondria has been extensively reported. This could be related to the effects on the progression of cell division of altered energy production, increased oxidative stress, and deregulated calcium homeostasis. However, evidence for a direct relationship is still lacking. The present study was aimed at investigating the possible effect of mitochondrial dysfunction on chromosomal instability as detected in primary human cells treated with the mitochondrial poison carbonyl cyanide 3-chlorophenyl hydrazone (CCCP). Chromosome instability was analyzed in anaphase and interphase cells to follow the fate of chromosome damage during the progression of mitosis and the subsequent cell cycle. Through the combination of cytogenetic approaches and molecular analyses, i.e. morphological cell analysis, formation and characterization of micronucleus content, Comet assay, and gene expression, it was demonstrated that the prevalent DNA damage associated with CCCP treatment was the induction of chromosome loss, while primary DNA damage was not detected. No alterations in the shape of anaphase cells were observed nor induction of multipolar spindles. The proper activation of mitotic checkpoint was maintained. A linear dose-response curve characterizing the CCCP effects suggested that multiple cellular targets could be affected by the CCCP-induced mitochondrial dysfunctions triggering aneuploidy. Conversely, a steep increase was induced by the positive control vinblastine, known to have tubulin as a unique target. In addition, the effect of CCCP on mitochondrial function was demonstrated by changes in mitochondrial DNA copy number and in the expression of genes involved in mitochondrial maintenance. Overall, these results indicate that the mitochondrial poison CCCP may induce aneugenic effects.


Subject(s)
Hydrazones , Poisons , Humans , Carbonyl Cyanide m-Chlorophenyl Hydrazone/metabolism , Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology , Hydrazones/metabolism , Hydrazones/pharmacology , Aneugens/metabolism , Poisons/metabolism , Poisons/pharmacology , Mitochondria , Fibroblasts , DNA/metabolism
3.
Bioorg Chem ; 128: 106069, 2022 11.
Article in English | MEDLINE | ID: mdl-35964501

ABSTRACT

RXRα, a unique and important nuclear receptor, plays a vital role in various biological and pathological pathways, including growth, differentiation, and apoptosis. We recently reported a transcription-independent function of RXRα in cancer cells in which RXRα is phosphorylated by Cdk1 at the onset of mitosis, resulting in its translocation to the centrosome, where the phosphorylated RXRα (p-RXRα) interacts with polo-like kinase 1 (PLK1) to promote centrosome maturation and mitotic progression. Significantly, we also identified that a small molecule XS-060 binds to RXRα and selectively inhibits the p-RXRα/PLK1 interaction to induce mitotic arrest and catastrophe in cancer cells. Here, we report our design, synthesis, and biological evaluation of a series of XS-060 analogs as RXRα-targeted anti-mitotic agents. Our results identified B10 as an improved anti-mitotic agent. B10 bound to RXRα (Kd = 3.04 ± 0.58 µM) and inhibited the growth of cervical cancer cells (HeLa, IC50 = 1.46 ± 0.10 µM) and hepatoma cells (HepG2, IC50 = 3.89 ± 0.45 µM and SK-hep-1, IC50 = 5.74 ± 0.50 µM) with low cytotoxicity to nonmalignant cells(LO2, IC50 > 50 µM). Furthermore, our mechanistic studies confirmed that B10 acted as an anticancer agent by inhibiting the p-RXRα/PLK1 pathway. These results provide a basis for further investigation and optimization of RXRα-targeted anti-mitotic molecules for cancer therapy.


Subject(s)
Hydrazones , Mitosis , Apoptosis , Centrosome/metabolism , HeLa Cells , Humans , Hydrazones/metabolism
4.
J Struct Biol ; 213(2): 107740, 2021 06.
Article in English | MEDLINE | ID: mdl-33962016

ABSTRACT

The multi-copper oxidase from the hyper-thermophilic bacteria Thermus thermophilus (Tth-MCO), has been previously characterized and described as an example of a laccase with low catalytic properties, especially when it is compared with the activity of fungal laccases, but it is active at high temperatures. Structurally, Tth-MCO has a unique feature: a ß-hairpin near the T1Cu site, which is not present in any other laccases deposited at the PDB. This ß-hairpin has an expected crystallographic behavior in solvent-exposed areas of a crystallized protein: lack of electron density, high B-values and several crystalline contacts with neighboring crystallographic copies; however, its dynamical behavior in solution and its biological implications have not been described. Here, we describe four new Tth-MCO crystallographic structures, and the ß-hairpin behavior has been analyzed by molecular dynamics simulations, considering the effect of pH and temperature. The ß-hairpin new crystallographic conformations described here, together with their dynamics, were used to understand the pH-restrained laccase activity of Tth-MCO against substrates as syringaldazine. Remarkably, there are insertions in laccases from Thermus and Meiothermus genus, sharing the same position and a methionine-rich composition of the Tth-MCO ß-hairpin. This unique high methionine content of the Tth-MCO ß-hairpin is responsible to coordinate, Ag+1 and Hg+1 in oxidative conditions, but Cu+1 and Cu+2 are not coordinated in crystallographic experiments, regardless of the redox conditions; however, Ag+1 addition does not affect Tth-MCO laccase activity against syringaldazine. Here, we propose that the pH-dependent ß-hairpin dynamical behavior could explain, at least in part, the inefficient laccase activity displayed by Tth-MCO in acidic pH values.


Subject(s)
Laccase/chemistry , Laccase/metabolism , Thermus thermophilus/metabolism , Amino Acid Motifs , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Crystallography, X-Ray , Hydrazones/metabolism , Hydrogen-Ion Concentration , Laccase/genetics , Methionine , Molecular Dynamics Simulation , Oxidation-Reduction , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Phylogeny , Protein Conformation , Temperature
5.
J Biol Chem ; 295(10): 3285-3300, 2020 03 06.
Article in English | MEDLINE | ID: mdl-31911436

ABSTRACT

Genetic and biochemical evidence points to an association between mitochondrial dysfunction and Parkinson's disease (PD). PD-associated mutations in several genes have been identified and include those encoding PTEN-induced putative kinase 1 (PINK1) and parkin. To identify genes, pathways, and pharmacological targets that modulate the clearance of damaged or old mitochondria (mitophagy), here we developed a high-content imaging-based assay of parkin recruitment to mitochondria and screened both a druggable genome-wide siRNA library and a small neuroactive compound library. We used a multiparameter principal component analysis and an unbiased parameter-agnostic machine-learning approach to analyze the siRNA-based screening data. The hits identified in this analysis included specific genes of the ubiquitin proteasome system, and inhibition of ubiquitin-conjugating enzyme 2 N (UBE2N) with a specific antagonist, Bay 11-7082, indicated that UBE2N modulates parkin recruitment and downstream events in the mitophagy pathway. Screening of the compound library identified kenpaullone, an inhibitor of cyclin-dependent kinases and glycogen synthase kinase 3, as a modulator of parkin recruitment. Validation studies revealed that kenpaullone augments the mitochondrial network and protects against the complex I inhibitor MPP+. Finally, we used a microfluidics platform to assess the timing of parkin recruitment to depolarized mitochondria and its modulation by kenpaullone in real time and with single-cell resolution. We demonstrate that the high-content imaging-based assay presented here is suitable for both genetic and pharmacological screening approaches, and we also provide evidence that pharmacological compounds modulate PINK1-dependent parkin recruitment.


Subject(s)
Mitochondria/metabolism , RNA, Small Interfering/metabolism , Small Molecule Libraries/metabolism , Ubiquitin-Protein Ligases/metabolism , Benzazepines/chemistry , Benzazepines/metabolism , Benzazepines/pharmacology , HeLa Cells , Humans , Hydrazones/chemistry , Hydrazones/metabolism , Hydrazones/pharmacology , Indoles/chemistry , Indoles/metabolism , Indoles/pharmacology , Membrane Potential, Mitochondrial/drug effects , Mitophagy/drug effects , Principal Component Analysis , Protein Kinases/chemistry , Protein Kinases/genetics , Protein Kinases/metabolism , RNA Interference , Small Molecule Libraries/chemistry , Small Molecule Libraries/pharmacology , Ubiquitin-Conjugating Enzymes/antagonists & inhibitors , Ubiquitin-Conjugating Enzymes/genetics , Ubiquitin-Conjugating Enzymes/metabolism , Ubiquitin-Protein Ligases/antagonists & inhibitors , Ubiquitin-Protein Ligases/genetics
6.
Bioorg Med Chem Lett ; 40: 127926, 2021 05 15.
Article in English | MEDLINE | ID: mdl-33705902

ABSTRACT

This work presents the design and synthesis of camphor, fenchone, and norcamphor N-acylhydrazone derivatives as a new class of inhibitors of the Hantaan virus, which causes haemorrhagic fever with renal syndrome (HFRS). A cytopathic model was developed for testing chemotherapeutics against the Hantaan virus, strain 76-118. In addition, a study of the antiviral activity was carried out using a pseudoviral system. It was found that the hit compound possesses significant activity (IC50 = 7.6 ± 2 µM) along with low toxicity (CC50 > 1000 µM). Using molecular docking procedures, the binding with Hantavirus nucleoprotein was evaluated and the correlation between the structure of the synthesised compounds and the antiviral activity was established.


Subject(s)
Antiviral Agents/pharmacology , Camphanes/pharmacology , Hantaan virus/drug effects , Hydrazones/pharmacology , Isoindoles/pharmacology , Norbornanes/pharmacology , Animals , Antiviral Agents/chemical synthesis , Antiviral Agents/metabolism , Camphanes/chemical synthesis , Camphanes/metabolism , Capsid Proteins/metabolism , Dogs , Drug Design , HEK293 Cells , Humans , Hydrazones/chemical synthesis , Hydrazones/metabolism , Isoindoles/chemical synthesis , Isoindoles/metabolism , Madin Darby Canine Kidney Cells , Microbial Sensitivity Tests , Molecular Docking Simulation , Norbornanes/chemical synthesis , Norbornanes/metabolism , Protein Binding , Viral Core Proteins/metabolism
7.
Bioorg Med Chem ; 37: 116097, 2021 05 01.
Article in English | MEDLINE | ID: mdl-33743356

ABSTRACT

Naproxen is a common non-steroidal anti-inflammatory drug, which is the most usually used propionic acid derivative for the treatment of many types of diseases. In this study, a series of novel (S)-Naproxen derivatives bearing hydrazide-hydrazone moiety were designed, synthesized, and evaluated for anticancer activity. The structures of these compounds were characterized by spectral (1H-13C NMR, FT-IR, and HR-MS analyses) methods. All synthesized compounds were screened for anticancer activity against two different human breast cancer cell lines (MDA-MB-231 and MCF-7). Among them, (S)-2-(6-methoxynaphthalen-2-yl)-N'-{(E)-[2-(trifluoromethoxy)phenyl]methylidene} propanehydrazide (3a) showed the most potent anticancer activity against both cancer cell lines with a good selectivity (IC50 = 22.42 and 59.81 µM, respectively). Furthermore, the molecular modeling of these compounds was studied on Vascular Endothelial Growth Factor Receptor 2. Inhibition of VEGFR-2 and apoptotic protein Bcl-2 was investigated in MDA-MB-231 cells treated with compound 3a by using Western Blotting. Apoptosis was also detected by staining with DAPI in fluorescence microscopy. Flow Cytometry analyses related to cell cycle phases showed that a dramatic increase in S and M phases was established compared to untreated control cells indicating the cancer cell cycle arrest. The anticancer activity of compound 3a was investigated in the Ehrlich acid tumor model, a well-validated in vivo ectopic breast cancer model, in mice. Our results showed that compound 3a had anticancer activity and decreased the tumor volume in both low (60 mg/kg) and high (120 mg/kg) doses in mice.


Subject(s)
Antineoplastic Agents/therapeutic use , Breast Neoplasms/drug therapy , Hydrazones/therapeutic use , Naproxen/analogs & derivatives , Naproxen/therapeutic use , Vascular Endothelial Growth Factor Receptor-2/antagonists & inhibitors , Animals , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/metabolism , Antineoplastic Agents/pharmacology , Breast Neoplasms/pathology , Cell Line, Tumor , Drug Design , Drug Screening Assays, Antitumor , Female , G1 Phase Cell Cycle Checkpoints/drug effects , Humans , Hydrazones/chemical synthesis , Hydrazones/metabolism , Hydrazones/pharmacology , Mice, Inbred BALB C , Molecular Docking Simulation , Naproxen/metabolism , Naproxen/pharmacology , Vascular Endothelial Growth Factor Receptor-2/metabolism
8.
Bioorg Chem ; 114: 105038, 2021 09.
Article in English | MEDLINE | ID: mdl-34102520

ABSTRACT

A novel series of hydrazone derivatives were designed and synthesized. Their structures were characterized by IR, 1H NMR, 13C NMR and HR-MS spectroscopic methods. The newly synthesized compounds were evaluated for their inhibitory activity against monoamine oxidase enzymes (MAO-A and MAO-B). Compounds 2a, 2k, 4a and 4i showed significant inhibitory activity against MAO-A, with IC50 value in the range of 0.084-0.207 µM compared to reference drug moclobemide (IC50 value = 6.061 µM). These compounds (2a, 2k, 4a and 4i) were exposed to cytotoxicity tests to establish their preliminary toxicological profiles and were found to be non-cytotoxic. Moreover, the most effective compound 4i was evaluated using enzyme kinetics and docking studies to elucidate the plausible mechanisms of inhibition of MAO-A. According to enzyme kinetic studies, compound 4i was a reversible and competitive inhibitor with similar inhibition features as the substrates. Also, it was seen that this compound was settled down very properly at the active site of MAO-A enzyme by doing important interactions owing to the docking studies. Finally, ADME predictions were applied to estimate pharmacokinetic profiles of synthesized compounds. According to calculated ADME predictions, all parameters of the compounds were within the standard ranges in terms of "Rule of Five" and "Rule of Three" and it was detected that the synthesized compounds (2a-4i) have good and promising pharmacokinetic profiles.


Subject(s)
Hydrazones/chemical synthesis , Monoamine Oxidase Inhibitors/chemical synthesis , Monoamine Oxidase/metabolism , Animals , Enzyme Assays , Humans , Hydrazones/metabolism , Hydrazones/pharmacokinetics , Hydrazones/toxicity , Kinetics , Mice , Molecular Docking Simulation , Monoamine Oxidase/chemistry , Monoamine Oxidase Inhibitors/metabolism , Monoamine Oxidase Inhibitors/pharmacokinetics , Monoamine Oxidase Inhibitors/toxicity , NIH 3T3 Cells , Protein Binding
9.
Bioorg Chem ; 115: 105133, 2021 10.
Article in English | MEDLINE | ID: mdl-34329993

ABSTRACT

Novel chemotherapeutic agents against multidrug resistant-tuberculosis (MDR-TB) are urgently needed at this juncture to save the life of TB-infected patients. In this work, we have synthesized and characterized novel isatin hydrazones 4(a-o) and their thiomorpholine tethered analogues 5(a-o). All the synthesized compounds were initially screened for their anti-mycobacterial activity against the H37Rv strain of Mycobacterium tuberculosis (MTB) under level-I testing. Remarkably, five compounds 4f, 4h, 4n, 5f and 5m (IC50 = 1.9 µM to 9.8 µM) were found to be most active, with 4f (IC50 = 1.9 µM) indicating highest inhibition of H37Rv. These compounds were further evaluated at level-II testing against the five drug-resistant strains such as isoniazid-resistant strains (INH-R1 and INH-R2), rifampicin-resistant strains (RIF-R1 and RIF-R2) and fluoroquinolone-resistant strain (FQ-R1) of MTB. Interestingly, 4f and 5f emerged as the most potent compounds with IC50 of 3.6 µM and 1.9 µM against RIF-R1 MTB strain, followed by INH-R1 MTB strain with IC50 of 3.5 µM and 3.4 µM, respectively. Against FQ-R1 MTB strain, the lead compounds 4f and 5f displayed excellent inhibition at IC50 5.9 µM and 4.9 µM, respectively indicating broad-spectrum of activity. Further, molecular docking, ADME pharmacokinetic and molecular dynamics simulations of the compounds were performed against the DNA gyrase B and obtained encouraging results.


Subject(s)
Antitubercular Agents/pharmacology , Drug Resistance, Multiple, Bacterial/drug effects , Hydrazones/chemistry , Isatin/chemistry , Morpholines/chemistry , Mycobacterium tuberculosis/drug effects , Antitubercular Agents/chemistry , Antitubercular Agents/metabolism , Binding Sites , Cell Survival/drug effects , DNA Gyrase/chemistry , DNA Gyrase/metabolism , Drug Design , Half-Life , Humans , Hydrazones/metabolism , Hydrazones/pharmacology , Microbial Sensitivity Tests , Molecular Docking Simulation , Rifampin/pharmacology , Structure-Activity Relationship
10.
Angew Chem Int Ed Engl ; 60(36): 19821-19828, 2021 09 01.
Article in English | MEDLINE | ID: mdl-34180113

ABSTRACT

Luzopeptins and related decadepsipeptides are bisintercalator nonribosomal peptides featuring rare acyl-substituted tetrahydropyridazine-3-carboxylic acid (Thp) subunits that are critical to their biological activities. Herein, we reconstitute the biosynthetic tailoring pathway in luzopeptin A biosynthesis through in vivo genetic and in vitro biochemical approaches. Significantly, we revealed a multitasking cytochrome P450 enzyme that catalyzes four consecutive oxidations including the highly unusual carbon-nitrogen bond desaturation, forming the hydrazone-bearing 4-OH-Thp residues. Moreover, we identified a membrane-bound acyltransferase that likely mediates the subsequent O-acetylation extracellularly, as a potential self-protective strategy for the producer strain. Further genome mining of novel decadepsipeptides and an associated P450 enzyme have provided mechanistic insights into the P450-mediated carbon-nitrogen bond desaturation. Our results not only reveal the molecular basis of pharmacophore formation in bisintercalator decadepsipeptides, but also expand the catalytic versatility of P450 family enzymes.


Subject(s)
Carbon/metabolism , Cytochrome P-450 Enzyme System/metabolism , Hydrazones/metabolism , Nitrogen/metabolism , Carbon/chemistry , Hydrazones/chemistry , Hydroxyquinolines/chemistry , Hydroxyquinolines/metabolism , Molecular Structure , Nitrogen/chemistry
11.
Neurochem Res ; 45(12): 3003-3020, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33079324

ABSTRACT

A new series of ten multifunctional Cinnamoyl-N-acylhydrazone-donepezil hybrids was synthesized and evaluated as multifunctional ligands against neurodegenerative diseases. The molecular hybridization approach was based on the combination of 1-benzyl-4-piperidine fragment from the anti-Alzheimer AChE inhibitor donepezil (1) and the cinnamoyl subunit from curcumin (2), a natural product with remarkable antioxidant, neuroprotective and anti-inflammatory properties, using a N-acylhydrazone fragment as a spacer subunit. Compounds 4a and 4d showed moderate inhibitory activity towards AChE with IC50 values of 13.04 and 9.1 µM, respectively. In addition, compound 4a and 4d showed a similar predicted binding mode to that observed for donepezil in the molecular docking studies. On the other hand, compounds 4a and 4c exhibited significant radical scavenging activity, showing the best effects on the DPPH test and also exhibited a significant protective neuronal cell viability exposed to t-BuOOH and against 6-OHDA insult to prevent the oxidative stress in Parkinson's disease. Similarly, compound 4c was capable to prevent the ROS formation, with indirect antioxidant activity increasing intracellular GSH levels and the ability to counteract the neurotoxicity induced by both OAß1-42 and 3-NP. In addition, ADMET in silico prediction indicated that both compounds 4a and 4c did not show relevant toxic effects. Due to their above-mentioned biological properties, compounds 4a and 4c could be explored as lead compounds in search of more effective and low toxic small molecules with multiple neuroprotective effects for neurodegenerative diseases.


Subject(s)
Cinnamates/pharmacology , Donepezil/pharmacology , Hydrazones/pharmacology , Neurodegenerative Diseases/drug therapy , Neuroprotective Agents/pharmacology , Acetylcholinesterase/metabolism , Butyrylcholinesterase/metabolism , Cell Line, Tumor , Cholinesterase Inhibitors/chemical synthesis , Cholinesterase Inhibitors/metabolism , Cholinesterase Inhibitors/pharmacokinetics , Cholinesterase Inhibitors/pharmacology , Cinnamates/chemical synthesis , Cinnamates/metabolism , Cinnamates/pharmacokinetics , Donepezil/chemical synthesis , Donepezil/metabolism , Donepezil/pharmacokinetics , Free Radical Scavengers/chemical synthesis , Free Radical Scavengers/metabolism , Free Radical Scavengers/pharmacokinetics , Free Radical Scavengers/pharmacology , Humans , Hydrazones/chemical synthesis , Hydrazones/metabolism , Hydrazones/pharmacokinetics , Ligands , Molecular Docking Simulation , Molecular Structure , Neuroprotective Agents/chemical synthesis , Neuroprotective Agents/metabolism , Neuroprotective Agents/pharmacokinetics , Protein Binding , Structure-Activity Relationship
12.
Bioorg Med Chem Lett ; 30(10): 127109, 2020 05 15.
Article in English | MEDLINE | ID: mdl-32201021

ABSTRACT

Histone lysine specific demethylase 1 (LSD1 or KDM1A) is a potential therapeutic target in oncology due to its overexpression in various human tumors. We report herein a new class of benzofuran acylhydrazones as potent LSD1 inhibitors. Among the 31 compounds prepared, 14 compounds exhibited excellent LSD1 inhibitory activity with IC50 values ranging from 7.2 to 68.8 nM. In cellular assays, several compounds inhibited the proliferations of various cancer cell lines, including PC-3, MCG-803, U87 MG, PANC-1, HT-29 and MCF-7. This opens up the opportunity for further optimization and investigation of this class compounds for potential cancer treatment.


Subject(s)
Benzofurans/chemistry , Enzyme Inhibitors/chemistry , Histone Demethylases/antagonists & inhibitors , Hydrazones/chemistry , Binding Sites , Cell Line, Tumor , Cell Proliferation/drug effects , Drug Design , Drug Screening Assays, Antitumor , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Histone Demethylases/metabolism , Humans , Hydrazones/metabolism , Hydrazones/pharmacology , Inhibitory Concentration 50 , Molecular Docking Simulation , Structure-Activity Relationship
13.
Bioorg Chem ; 103: 104220, 2020 10.
Article in English | MEDLINE | ID: mdl-32896742

ABSTRACT

A series of novel oxo-hydrazone and spirocondensed-thiazolidine derivatives of imidazo[2,1-b]thiazole were synthesized and evaluated for their antioxidant activity. The antioxidant activity of 18 newly synthesized compounds and 12 previously reported compounds bearing similar scaffold, were evaluated by three different methods: inhibition of FeCl3/ascorbate system-induced lipid peroxidation of lecithin liposome (anti-LPO), scavenging activity against ABTS radical and Ferric Reducing Antioxidant Power (FRAP) activity. 4h, 5h, and 6h displayed the highest anti-LPO and ABTS radical removal activity. Also, in FRAP analysis, 4i and 4a displayed the best activity. In addition to the in vitro analysis, docking studies targeting the active site of Human peroxiredoxin 5 (PDB ID: 1HD2) were employed to explore the possible interactions of these compounds with the receptor. Structure-activity relationships, as well as virtual ADME studies, were carried out and a relationship between biological, electronic, and physicochemical qualifications of the target compounds was determined.


Subject(s)
Free Radical Scavengers/pharmacology , Imidazoles/pharmacology , Thiazoles/pharmacology , Catalytic Domain , Drug Design , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacokinetics , Enzyme Inhibitors/pharmacology , Free Radical Scavengers/chemical synthesis , Free Radical Scavengers/metabolism , Free Radical Scavengers/pharmacokinetics , Humans , Hydrazones/chemical synthesis , Hydrazones/metabolism , Hydrazones/pharmacokinetics , Hydrazones/pharmacology , Imidazoles/chemical synthesis , Imidazoles/metabolism , Imidazoles/pharmacokinetics , Lipid Peroxidation/drug effects , Molecular Docking Simulation , Molecular Structure , Peroxiredoxins/antagonists & inhibitors , Peroxiredoxins/chemistry , Peroxiredoxins/metabolism , Protein Binding , Structure-Activity Relationship , Thiazoles/chemical synthesis , Thiazoles/metabolism , Thiazoles/pharmacokinetics
14.
Mol Divers ; 24(3): 673-689, 2020 Aug.
Article in English | MEDLINE | ID: mdl-31302853

ABSTRACT

In trying to develop new anticancer agents, a series of sulfonylhydrazones were synthesized. All synthesized compounds were checked for identity and purity using elemental analysis, TLC and HPLC and were characterized by their melting points, FT-IR and NMR spectral data. All synthesized compounds were evaluated for their cytotoxic activity against prostate cancer (PC3), breast cancer (MCF-7) and L929 mouse fibroblast cell lines. Among them, N'-[(2-chloro-3-methoxyphenyl)methylidene]-4-methylbenzenesulfonohydrazide (3k) showed the most potent anticancer activity against both cancer cells with good selectivity (IC50 = 1.38 µM on PC3 with SI = 432.30 and IC50 = 46.09 µM on MCF-7 with SI = 12.94). Further investigation confirmed that 3k displayed morphological alterations in PC3 and MCF-7 cells and promoted apoptosis through down-regulation of the Bcl-2 and upregulation of Bax expression. Additionally, compound 3k was identified as the most potent COX-2 inhibitor (91% inhibition) beside lower COX-1 inhibition. Molecular docking of the tested compounds represented important binding modes which may be responsible for their anticancer activity via inhibition of the COX-2 enzyme. Overall, the lead compound 3k deserves further development as a potential anticancer agent. Sulfonylhydrazones was synthesized and N'-[(2-chloro-3-methoxyphenyl)methylidene]-4- methylbenzenesulfonohydrazide (3k) was identified as the most potent anticancer agent and COX-2 inhibitor. In addition, this compound docked inside the active site of COX-2 succesfully.


Subject(s)
Cyclooxygenase 2/metabolism , Hydrazones/chemical synthesis , Hydrazones/pharmacology , Molecular Docking Simulation , Animals , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents/pharmacology , Cell Line, Tumor , Chemistry Techniques, Synthetic , Cyclooxygenase 2/chemistry , Cyclooxygenase 2 Inhibitors/chemical synthesis , Cyclooxygenase 2 Inhibitors/chemistry , Cyclooxygenase 2 Inhibitors/metabolism , Cyclooxygenase 2 Inhibitors/pharmacology , Humans , Hydrazones/chemistry , Hydrazones/metabolism , Mice , Protein Conformation
15.
J Environ Sci Health B ; 55(12): 1048-1060, 2020.
Article in English | MEDLINE | ID: mdl-32877269

ABSTRACT

The oxidation activity of multicopper-oxidases overlaps with different substrates of laccases and bilirubin oxidases, thus in the present study an integrated approach of bioinformatics using homology modeling, docking, and experimental validation was used to confirm the type of multicopper-oxidase in Myrothecium verrucaria ITCC-8447. The result of peptide sequence of M. verrucaria ITCC-8447 enabled to predict the 3 D-structure of multicopper-oxidase. It was overlapped with the structure of laccase and root mean square deviation (RMSD) was 1.53 Å for 533 and, 171 residues. The low binding energy with azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) (-5.64) as compared to bilirubin (-4.39) suggested that M. verrucaria ITCC-8447 have laccase-like activity. The experimental analysis confirmed high activity with laccase specific substrates, phenol (18.3 U/L), ampyrone (172.4 U/L) and, ampyrone phenol coupling (50 U/L) as compared to bilirubin oxidase substrate bilirubin (16.6 U/L). In addition, lowest binding energy with ABTS (-5.64), syringaldazine SYZ (-4.83), guaiacol GCL (-4.42), and 2,6-dimethoxyphenol DMP (-4.41) confirmed the presence of laccase. Further, complete remediation of two hazardous model pollutants i.e., phenol and resorcinol (1.5 mM) after 12 h of incubation and low binding energy of -4.32 and, -4.85 respectively confirmed its removal by laccase. The results confirmed the presence of laccase in M. verrucaria ITCC-8447 and its effective bioremediation potential.


Subject(s)
Hypocreales/enzymology , Laccase/chemistry , Laccase/metabolism , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Amino Acid Sequence , Ampyrone/metabolism , Benzothiazoles/metabolism , Bilirubin/metabolism , Computer Simulation , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Guaiacol/metabolism , Hydrazones/metabolism , Hydrogen-Ion Concentration , Molecular Docking Simulation , Oxidoreductases Acting on CH-CH Group Donors/chemistry , Oxidoreductases Acting on CH-CH Group Donors/metabolism , Phenol/metabolism , Protein Conformation , Pyrogallol/analogs & derivatives , Pyrogallol/metabolism , Substrate Specificity , Sulfonic Acids/metabolism
16.
Biomacromolecules ; 20(6): 2305-2314, 2019 06 10.
Article in English | MEDLINE | ID: mdl-31091092

ABSTRACT

Selective release of small interfering RNA (siRNA) payloads in response to intracellular substances is a prerequisite for the smart design of siRNA carriers. In this context, we developed a molecular program that allows reactivity with pyruvate for siRNA release in the cell on the basis of polyionic-complex- (PIC-) based siRNA carriers. Hydrazide can react with the α-keto acid structure of anionic pyruvate to form α-oxohydrazone, resulting in the reduction of the cationic net charge of the cationic polymer bearing a hydrazide moiety, which in turn leads to an inefficient electrostatic interaction with anionic siRNA and the consequent destabilization of the PIC (i.e., PGlu [DET/hydrazide]) in pyruvate-enriched environments, such as the cytoplasm, thus achieving effective siRNA release from the PIC and its associated gene-silencing activity. The present study provides the rationale for an α-oxohydrazone-formation-based smart design of pyruvate-responsive materials in the cell.


Subject(s)
Drug Carriers , Hydrazones/metabolism , Pyruvic Acid/metabolism , RNA, Small Interfering , Cell Line, Tumor , Delayed-Action Preparations/chemistry , Delayed-Action Preparations/pharmacokinetics , Delayed-Action Preparations/pharmacology , Drug Carriers/chemistry , Drug Carriers/pharmacokinetics , Drug Carriers/pharmacology , Humans , RNA, Small Interfering/chemistry , RNA, Small Interfering/pharmacokinetics , RNA, Small Interfering/pharmacology
17.
Bioorg Chem ; 84: 372-383, 2019 03.
Article in English | MEDLINE | ID: mdl-30530108

ABSTRACT

Xanthenone based hydrazone derivatives (5a-n) have been synthesized as potential α-glucosidase inhibitors. All synthesized compounds (5a-n) are characterized by their FTIR, 1H NMR, 13C NMR and HRMS, and in case of 5g also by X-ray crystallographic technique. The compounds unveiled a varying degree of α-glucosidase inhibitory activity when compared with standard acarbose (IC50 = 375.38 ±â€¯0.12 µM). Amongst the series, compound 5l (IC50 = 62.25 ±â€¯0.11 µM) bearing a trifluoromethyl phenyl group is found to be the most active compound. Molecular modelling is performed to establish the binding pattern of the more active compound 5l, which revealed the significance of substitution pattern. The pharmacological properties of molecules are also calculated by MedChem Designer which determines the ADME (absorption, distribution, metabolism, excretion) properties of molecules. The solid state self-assembly of compound 5g is discussed to show the conformation and role of iminoamide moiety in the molecular packing.


Subject(s)
Glycoside Hydrolase Inhibitors/chemical synthesis , Hydrazones/chemistry , Xanthenes/chemistry , alpha-Glucosidases/chemistry , Binding Sites , Catalytic Domain , Crystallography, X-Ray , Glycoside Hydrolase Inhibitors/metabolism , Hydrazones/metabolism , Inhibitory Concentration 50 , Molecular Conformation , Molecular Docking Simulation , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Saccharomyces cerevisiae Proteins/metabolism , Structure-Activity Relationship , alpha-Glucosidases/metabolism
18.
Bioorg Chem ; 83: 235-241, 2019 03.
Article in English | MEDLINE | ID: mdl-30384179

ABSTRACT

In this work a total of 12 carbazoles and hydrazone-bridged thiazole-pyrrole derivatives have been identified as new competitive inhibitors of tyrosinase. Carbazole derivative with 2-benzoimidazole substitution showed most potent inhibition in the series. Other carbazole derivatives containing benzothiazole and benzoxazole substitutions showed comparable levels of tyrosinase inhibition. The hydrazone derivatives also showed potent tyrosinase inhibitory activity with comparable Ki values except one with fluoride at its terminal position. Kinetic studies showed competitive inhibition of tyrosinase by all compounds that increased the substrate Km without changing the Vmax value. Moreover, experimental evidence suggests that the target compounds specifically bind to the binuclear copper center of the tyrosinase active site in an apparent mono-dentate fashion. Carbazoles and hydrazones are new and emerging classes of compounds as tyrosinase inhibitors that may provide new structural avenues to discovery of drugs targeting the treatment of hyperpigmentation and related dermatological disorders.


Subject(s)
Carbazoles/metabolism , Copper/metabolism , Enzyme Inhibitors/metabolism , Hydrazones/metabolism , Monophenol Monooxygenase/chemistry , Agaricales/enzymology , Carbazoles/chemical synthesis , Carbazoles/chemistry , Catalytic Domain , Copper/chemistry , Crystallography, X-Ray , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Hydrazones/chemical synthesis , Hydrazones/chemistry , Kinetics
19.
Bioorg Chem ; 91: 103137, 2019 10.
Article in English | MEDLINE | ID: mdl-31400554

ABSTRACT

Design, synthesis and characterization of new trinary Benzocoumarin-Thiazoles-Azomethine derivatives having three bioactive scaffolds in a single structural unit were carried out. The newly synthesized molecules were investigated for the inhibitory activity on human tissue nonspecific alkaline phosphatase (h-TNAP) and human intestinal alkaline phosphatase (h-IAP) isozymes. All the tested compounds exhibited the potent inhibition profile on both isozymes of alkaline phosphatase i.e., h-TNAP and h-IAP. Molecular docking studies were performed to explore the putative binding mode of interactions of selective inhibitors. Moreover, the synthesized derivatives were evaluated against cervical cancer cell line, HeLa and a few compounds exhibited significant inhibition in the range of 21.0-69.7%. The derivatives can be potential and selective alkaline phosphatase inhibitors for future studies.


Subject(s)
Alkaline Phosphatase/antagonists & inhibitors , Coumarins/pharmacology , Enzyme Inhibitors/pharmacology , Hydrazones/pharmacology , Thiazoles/pharmacology , Alkaline Phosphatase/chemistry , Alkaline Phosphatase/metabolism , Animals , COS Cells , Catalytic Domain , Cell Line, Tumor , Cell Proliferation/drug effects , Chlorocebus aethiops , Coumarins/chemical synthesis , Coumarins/metabolism , Drug Design , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/metabolism , GPI-Linked Proteins/antagonists & inhibitors , GPI-Linked Proteins/chemistry , GPI-Linked Proteins/metabolism , Humans , Hydrazones/chemical synthesis , Hydrazones/metabolism , Molecular Docking Simulation , Molecular Structure , Protein Binding , Structure-Activity Relationship , Thiazoles/chemical synthesis , Thiazoles/metabolism
20.
Proc Natl Acad Sci U S A ; 113(21): 5850-5, 2016 May 24.
Article in English | MEDLINE | ID: mdl-27162326

ABSTRACT

To acquire essential Fe(III), bacteria produce and secrete siderophores with high affinity and selectivity for Fe(III) to mediate its uptake into the cell. Here, we show that the periplasmic binding protein CeuE of Campylobacter jejuni, which was previously thought to bind the Fe(III) complex of the hexadentate siderophore enterobactin (Kd ∼ 0.4 ± 0.1 µM), preferentially binds the Fe(III) complex of the tetradentate enterobactin hydrolysis product bis(2,3-dihydroxybenzoyl-l-Ser) (H5-bisDHBS) (Kd = 10.1 ± 3.8 nM). The protein selects Λ-configured [Fe(bisDHBS)](2-) from a pool of diastereomeric Fe(III)-bisDHBS species that includes complexes with metal-to-ligand ratios of 1:1 and 2:3. Cocrystal structures show that, in addition to electrostatic interactions and hydrogen bonding, [Fe(bisDHBS)](2-) binds through coordination of His227 and Tyr288 to the iron center. Similar binding is observed for the Fe(III) complex of the bidentate hydrolysis product 2,3-dihydroxybenzoyl-l-Ser, [Fe(monoDHBS)2](3-) The mutation of His227 and Tyr288 to noncoordinating residues (H227L/Y288F) resulted in a substantial loss of affinity for [Fe(bisDHBS)](2-) (Kd ∼ 0.5 ± 0.2 µM). These results suggest a previously unidentified role for CeuE within the Fe(III) uptake system of C. jejuni, provide a molecular-level understanding of the underlying binding pocket adaptations, and rationalize reports on the use of enterobactin hydrolysis products by C. jejuni, Vibrio cholerae, and other bacteria with homologous periplasmic binding proteins.


Subject(s)
Bacterial Proteins/chemistry , Campylobacter jejuni/metabolism , Carrier Proteins/chemistry , Coordination Complexes/chemistry , Enterobactin/metabolism , Iron/metabolism , Siderophores/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Benzoates/chemistry , Benzoates/metabolism , Campylobacter jejuni/genetics , Carrier Proteins/genetics , Carrier Proteins/metabolism , Coordination Complexes/metabolism , Crystallography, X-Ray , Gene Expression , Hydrazones/chemistry , Hydrazones/metabolism , Hydrogen Bonding , Hydrolysis , Ion Transport , Iron-Binding Proteins , Ligands , Models, Molecular , Mutation , Protein Binding , Static Electricity , Stereoisomerism
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