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1.
Cell ; 187(8): 1907-1921.e16, 2024 Apr 11.
Article in English | MEDLINE | ID: mdl-38552624

ABSTRACT

Hydroxyproline-rich glycoproteins (HRGPs) are a ubiquitous class of protein in the extracellular matrices and cell walls of plants and algae, yet little is known of their native structures or interactions. Here, we used electron cryomicroscopy (cryo-EM) to determine the structure of the hydroxyproline-rich mastigoneme, an extracellular filament isolated from the cilia of the alga Chlamydomonas reinhardtii. The structure demonstrates that mastigonemes are formed from two HRGPs (a filament of MST1 wrapped around a single copy of MST3) that both have hyperglycosylated poly(hydroxyproline) helices. Within the helices, O-linked glycosylation of the hydroxyproline residues and O-galactosylation of interspersed serine residues create a carbohydrate casing. Analysis of the associated glycans reveals how the pattern of hydroxyproline repetition determines the type and extent of glycosylation. MST3 possesses a PKD2-like transmembrane domain that forms a heteromeric polycystin-like cation channel with PKD2 and SIP, explaining how mastigonemes are tethered to ciliary membranes.


Subject(s)
Chlamydomonas reinhardtii , Cilia , Glycoproteins , Cilia/chemistry , Glycoproteins/chemistry , Glycosylation , Hydroxyproline/chemistry , Plants/metabolism , Chlamydomonas reinhardtii/chemistry
2.
J Biol Chem ; 298(8): 102109, 2022 08.
Article in English | MEDLINE | ID: mdl-35679897

ABSTRACT

Collagenase from the gram-negative bacterium Grimontia hollisae strain 1706B (Ghcol) degrades collagen more efficiently even than clostridial collagenase, the most widely used industrial collagenase. However, the structural determinants facilitating this efficiency are unclear. Here, we report the crystal structures of ligand-free and Gly-Pro-hydroxyproline (Hyp)-complexed Ghcol at 2.2 and 2.4 Å resolution, respectively. These structures revealed that the activator and peptidase domains in Ghcol form a saddle-shaped structure with one zinc ion and four calcium ions. In addition, the activator domain comprises two homologous subdomains, whereas zinc-bound water was observed in the ligand-free Ghcol. In the ligand-complexed Ghcol, we found two Gly-Pro-Hyp molecules, each bind at the active site and at two surfaces on the duplicate subdomains of the activator domain facing the active site, and the nucleophilic water is replaced by the carboxyl oxygen of Hyp at the P1 position. Furthermore, all Gly-Pro-Hyp molecules bound to Ghcol have almost the same conformation as Pro-Pro-Gly motif in model collagen (Pro-Pro-Gly)10, suggesting these three sites contribute to the unwinding of the collagen triple helix. A comparison of activities revealed that Ghcol exhibits broader substrate specificity than clostridial collagenase at the P2 and P2' positions, which may be attributed to the larger space available for substrate binding at the S2 and S2' sites in Ghcol. Analysis of variants of three active-site Tyr residues revealed that mutation of Tyr564 affected catalysis, whereas mutation of Tyr476 or Tyr555 affected substrate recognition. These results provide insights into the substrate specificity and mechanism of G. hollisae collagenase.


Subject(s)
Bacterial Proteins , Collagen , Collagenases , Vibrionaceae , Bacterial Proteins/chemistry , Collagen/chemistry , Collagenases/chemistry , Hydroxyproline/chemistry , Substrate Specificity , Vibrionaceae/enzymology , Water/chemistry , Zinc/chemistry
3.
J Biol Chem ; 298(3): 101708, 2022 03.
Article in English | MEDLINE | ID: mdl-35150746

ABSTRACT

Early studies revealed that chicken embryos incubated with a rare analog of l-proline, 4-oxo-l-proline, showed increased levels of the metabolite 4-hydroxy-l-proline. In 1962, 4-oxo-l-proline reductase, an enzyme responsible for the reduction of 4-oxo-l-proline, was partially purified from rabbit kidneys and characterized biochemically. However, only recently was the molecular identity of this enzyme solved. Here, we report the purification from rat kidneys, identification, and biochemical characterization of 4-oxo-l-proline reductase. Following mass spectrometry analysis of the purified protein preparation, the previously annotated mammalian cytosolic type 2 (R)-ß-hydroxybutyrate dehydrogenase (BDH2) emerged as the only candidate for the reductase. We subsequently expressed rat and human BDH2 in Escherichia coli, then purified it, and showed that it catalyzed the reversible reduction of 4-oxo-l-proline to cis-4-hydroxy-l-proline via chromatographic and tandem mass spectrometry analysis. Specificity studies with an array of compounds carried out on both enzymes showed that 4-oxo-l-proline was the best substrate, and the human enzyme acted with 12,500-fold higher catalytic efficiency on 4-oxo-l-proline than on (R)-ß-hydroxybutyrate. In addition, human embryonic kidney 293T (HEK293T) cells efficiently metabolized 4-oxo-l-proline to cis-4-hydroxy-l-proline, whereas HEK293T BDH2 KO cells were incapable of producing cis-4-hydroxy-l-proline. Both WT and KO HEK293T cells also produced trans-4-hydroxy-l-proline in the presence of 4-oxo-l-proline, suggesting that the latter compound might interfere with the trans-4-hydroxy-l-proline breakdown in human cells. We conclude that BDH2 is a mammalian 4-oxo-l-proline reductase that converts 4-oxo-l-proline to cis-4-hydroxy-l-proline and not to trans-4-hydroxy-l-proline, as originally thought. We also hypothesize that this enzyme may be a potential source of cis-4-hydroxy-l-proline in mammalian tissues.


Subject(s)
Amino Acid Oxidoreductases , Hydroxybutyrate Dehydrogenase , Amino Acid Oxidoreductases/chemistry , Amino Acid Oxidoreductases/metabolism , Animals , Chick Embryo , Escherichia coli/metabolism , HEK293 Cells , Humans , Hydroxybutyrate Dehydrogenase/chemistry , Hydroxybutyrate Dehydrogenase/metabolism , Hydroxyproline/chemistry , Hydroxyproline/metabolism , Mammals/metabolism , Proline/analogs & derivatives , Proline/metabolism , Rabbits , Rats
4.
Amino Acids ; 55(11): 1655-1664, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37782378

ABSTRACT

Vitamin C plays a very important role in the repair of connective tissue, especially for sports whose training causes the most damage to this tissue. Therefore, many people believe that L-ascorbic acid (C6H8O6: vitamin C) reduces the recovery time between sports exercises. The most abundant form of structural protein in the body is collagen. Collagen is characterized by a high concentration of the three amino acids glycine (Gly), proline (Pro), and hydroxyproline (Hyp), which creates its characteristic triple helix structure. Therefore, in this study, the effect of vitamin C presence on the sequence, interaction, and orientation of amino acids for collagen formation is investigated using computational simulation. This study aimed to investigate the mechanism of action of vitamin C in terms of thermodynamics and structure of the reaction. The calculations are performed using density function theory (DFT) by the base set of B3LYP/6-311++G (p,d). The results show that the presence of vitamin C is effective in the formation of collagen protein for this interaction and the mechanism of amino acid sequence (Gly-Hyp-Pro) is better in the formation of collagen protein in the presence of vitamin C. The presence of Vit-C in the formation and direction of hydroxyproline (Hyp) causes its separation from the prolyl 5-hydroxylase enzyme. In the absence of vitamin C, the reaction stops at this stage and proline cannot be converted into hydroxyproline. The computational data shows vitamin C prevents unwanted interactions and directs amino acid reactions to repair connective tissue (collagen). Therefore, vitamin C acts as a cofactor in the Prolyl 5-Hydroxylase enzyme and causes it to convert proline to hydroxyl.


Subject(s)
Amino Acids , Proline , Humans , Hydroxyproline/chemistry , Protein Structure, Secondary , Proline/chemistry , Collagen/chemistry , Glycine , Ascorbic Acid , Mixed Function Oxygenases
5.
Biomacromolecules ; 24(11): 4653-4662, 2023 11 13.
Article in English | MEDLINE | ID: mdl-37656903

ABSTRACT

Collagen is one of the most studied proteins due to its fundamental role in creating fibrillar structures and supporting tissues in our bodies. Accordingly, collagen is also one of the most used proteins for making tissue-engineered scaffolds for various types of tissues. To date, the high abundance of hydroxyproline (Hyp) within collagen is commonly ascribed to the structure and stability of collagen. Here, we hypothesize a new role for the presence of Hyp within collagen, which is to support proton transport (PT) across collagen fibrils. For this purpose, we explore here three different collagen-based hydrogels: the first is prepared by the self-assembly of natural collagen fibrils, and the second and third are based on covalently linking between collagen via either a self-coupling method or with an additional cross-linker. Following the formation of the hydrogel, we introduce here a two-step reaction, involving (1) attaching methanesulfonyl to the -OH group of Hyp, followed by (2) removing the methanesulfonyl, thus reverting Hyp to proline (Pro). We explore the PT efficiency at each step of the reaction using electrical measurements and show that adding the methanesulfonyl group vastly enhances PT, while reverting Hyp to Pro significantly reduces PT efficiency (compared with the initial point) with different efficiencies for the various collagen-based hydrogels. The role of Hyp in supporting the PT can assist in our understanding of the physiological roles of collagen. Furthermore, the capacity to modulate conductivity across collagen is very important to the use of collagen in regenerative medicine.


Subject(s)
Proline , Protons , Hydroxyproline/chemistry , Proline/chemistry , Collagen/chemistry , Hydrogels
6.
Angew Chem Int Ed Engl ; 62(3): e202214728, 2023 01 16.
Article in English | MEDLINE | ID: mdl-36409045

ABSTRACT

Collagen model peptides (CMPs) consisting of proline-(2S,4R)-hydroxyproline-glycine (POG) repeats have provided a breadth of knowledge of the triple helical structure of collagen, the most abundant protein in mammals. Predictive tools for triple helix stability have, however, lagged behind since the effect of CMPs with different frames ([POG]n , [OGP]n , or [GPO]n ) and capped or uncapped termini have so far been underestimated. Here, we elucidated the impact of the frame, terminal functional group and its charge on the stability of collagen triple helices. Combined experimental and theoretical studies with frame-shifted, capped and uncapped CMPs revealed that electrostatic interactions, strand preorganization, interstrand H-bonding, and steric repulsion at the termini contribute to triple helix stability. We show that these individual contributions are additive and allow for the prediction of the melting temperatures of CMP trimers.


Subject(s)
Collagen , Peptides , Animals , Collagen/chemistry , Peptides/chemistry , Proline/chemistry , Hydroxyproline/chemistry , Glycine , Mammals
7.
J Am Chem Soc ; 144(22): 9715-9722, 2022 06 08.
Article in English | MEDLINE | ID: mdl-35611954

ABSTRACT

Hydroxyprolines are highly abundant in nature as they are components of many structural proteins and osmolytes. Anaerobic degradation of trans-4-hydroxy-l-proline (t4L-HP) was previously found to involve the glycyl radical enzyme (GRE) t4L-HP dehydratase (HypD). Here, we report a pathway for anaerobic hydroxyproline degradation that involves a new GRE, trans-4-hydroxy-d-proline (t4D-HP) C-N-lyase (HplG). In this pathway, cis-4-hydroxy-l-proline (c4L-HP) is first isomerized to t4D-HP, followed by radical-mediated ring opening by HplG to give 2-amino-4-ketopentanoate (AKP), the first example of a ring opening reaction catalyzed by a GRE 1,2-eliminase. Subsequent cleavage by AKP thiolase (OrtAB) yields acetyl-CoA and d-alanine. We report a crystal structure of HplG in complex with t4D-HP at a resolution of 2.7 Å, providing insights into its catalytic mechanism. Different from HypD commonly identified in proline-reducing Clostridia, HplG is present in other types of fermenting bacteria, including propionate-producing bacteria, underscoring the diversity of enzymatic radical chemistry in the anaerobic microbiome.


Subject(s)
Proline , Proteins , Anaerobiosis , Hydroxyproline/chemistry , Proline/metabolism , Proteins/metabolism
8.
J Am Chem Soc ; 144(40): 18642-18649, 2022 10 12.
Article in English | MEDLINE | ID: mdl-36179150

ABSTRACT

Collagen model peptides (CMPs), composed of proline-(2S,4R)-hydroxyproline-glycine (POG) repeat units, have been extensively used to study the structure and stability of triple-helical collagen─the dominant structural protein in mammals─at the molecular level. Despite the more than 50-year history of CMPs and numerous studies on the relationship between the composition of single-stranded CMPs and the thermal stability of the assembled triple helices, little attention has been paid to the effects arising from their terminal residues. Here, we show that frame-shifted CMPs, which share POG repeat units but terminate with P, O, or G, form triple helices with vastly different thermal stabilities. A melting temperature difference as high as 16 °C was found for triple helices from 20-mers Ac-OG[POG]6-NH2 and Ac-[POG]6PO-NH2, and triple helices of the constitutional isomers Ac-[POG]7-NH2 and Ac-[GPO]7-NH2 melt 10 °C apart. A combination of thermal denaturation, circular dichroism and NMR spectroscopic studies, and molecular dynamics simulations revealed that the stability differences originate from the propensity of the peptide termini to preorganize into a polyproline-II helical structure. Our results advise that care must be taken when designing peptide mimics of structural proteins, as subtle changes in the terminal residues can significantly affect their properties. Our findings also provide a general and straightforward tool for tuning the stability of CMPs for applications as synthetic materials and biological probes.


Subject(s)
Collagen , Peptides , Amino Acid Sequence , Circular Dichroism , Collagen/chemistry , Glycine , Hydroxyproline/chemistry , Peptides/chemistry , Proline/chemistry
9.
J Am Chem Soc ; 144(6): 2484-2487, 2022 02 16.
Article in English | MEDLINE | ID: mdl-35107291

ABSTRACT

Analyzing the δ2H values in individual amino acids of proteins extracted from vertebrates, we unexpectedly found in some samples, notably bone collagen from seals, more than twice as much deuterium in proline and hydroxyproline residues than in seawater. This corresponds to at least 4 times higher δ2H than in any previously reported biogenic sample. We ruled out diet as a plausible mechanism for such anomalous enrichment. This finding puts into question the old adage that "you are what you eat".


Subject(s)
Collagen/chemistry , Deuterium/chemistry , Hydroxyproline/chemistry , Proline/chemistry , Animals , Anseriformes , Bone and Bones/chemistry , Fibroblasts , Humans , Mice , Seals, Earless , Ursidae
10.
Amino Acids ; 54(4): 513-528, 2022 Apr.
Article in English | MEDLINE | ID: mdl-34342708

ABSTRACT

trans-4-Hydroxy-L-proline is highly abundant in collagen (accounting for about one-third of body proteins in humans and other animals). This imino acid (loosely called amino acid) and its minor analogue trans-3-hydroxy-L-proline in their ratio of approximately 100:1 are formed from the post-translational hydroxylation of proteins (primarily collagen and, to a much lesser extent, non-collagen proteins). Besides their structural and physiological significance in the connective tissue, both trans-4-hydroxy-L-proline and trans-3-hydroxy-L-proline can scavenge reactive oxygen species and have both structural and physiological significance in animals. The formation of trans-4-hydroxy-L-proline residues in protein kinases B and DYRK1A, eukaryotic elongation factor 2 activity, and hypoxia-inducible transcription factor plays an important role in regulating their phosphorylation and catalytic activation as well as cell signaling in animal cells. These biochemical events contribute to the modulation of cell metabolism, growth, development, responses to nutritional and physiological changes (e.g., dietary protein intake and hypoxia), and survival. Milk, meat, skin hydrolysates, and blood, as well as whole-body collagen degradation provide a large amount of trans-4-hydroxy-L-proline. In animals, most (nearly 90%) of the collagen-derived trans-4-hydroxy-L-proline is catabolized to glycine via the trans-4-hydroxy-L-proline oxidase pathway, and trans-3-hydroxy-L-proline is degraded via the trans-3-hydroxy-L-proline dehydratase pathway to ornithine and glutamate, thereby conserving dietary and endogenously synthesized proline and arginine. Supplementing trans-4-hydroxy-L-proline or its small peptides to plant-based diets can alleviate oxidative stress, while increasing collagen synthesis and accretion in the body. New knowledge of hydroxyproline biochemistry and nutrition aids in improving the growth, health and well-being of humans and other animals.


Subject(s)
Dietary Proteins , Proline , Animals , Collagen/chemistry , Hydroxyproline/chemistry , Hypoxia , Proline/chemistry , Signal Transduction
11.
Arch Biochem Biophys ; 698: 108727, 2021 02 15.
Article in English | MEDLINE | ID: mdl-33333077

ABSTRACT

Proline utilization A (PutA) proteins are bifunctional proline catabolic enzymes that catalyze the 4-electron oxidation of l-proline to l-glutamate using spatially-separated proline dehydrogenase and l-glutamate-γ-semialdehyde dehydrogenase (GSALDH, a.k.a. ALDH4A1) active sites. The observation that l-proline inhibits both the GSALDH activity of PutA and monofunctional GSALDHs motivated us to study the inhibition of PutA by proline stereoisomers and analogs. Here we report five high-resolution crystal structures of PutA with the following ligands bound in the GSALDH active site: d-proline, trans-4-hydroxy-d-proline, cis-4-hydroxy-d-proline, l-proline, and trans-4-hydroxy-l-proline. Three of the structures are of ternary complexes of the enzyme with an inhibitor and either NAD+ or NADH. To our knowledge, the NADH complex is the first for any GSALDH. The structures reveal a conserved mode of recognition of the inhibitor carboxylate, which results in the pyrrolidine rings of the d- and l-isomers having different orientations and different hydrogen bonding environments. Activity assays show that the compounds are weak inhibitors with millimolar inhibition constants. Curiously, although the inhibitors occupy the aldehyde binding site, kinetic measurements show the inhibition is uncompetitive. Uncompetitive inhibition may involve proline binding to a remote site or to the enzyme-NADH complex. Together, the structural and kinetic data expand our understanding of how proline-like molecules interact with GSALDH, reveal insight into the relationship between stereochemistry and inhibitor affinity, and demonstrate the pitfalls of inferring the mechanism of inhibition from crystal structures alone.


Subject(s)
Bacterial Proteins/metabolism , Enzyme Inhibitors/metabolism , Glutamate-5-Semialdehyde Dehydrogenase/metabolism , Hydroxyproline/metabolism , Membrane Proteins/metabolism , Proline/metabolism , Bacterial Proteins/chemistry , Catalytic Domain , Crystallography, X-Ray , Enzyme Inhibitors/chemistry , Glutamate-5-Semialdehyde Dehydrogenase/chemistry , Hydroxyproline/chemistry , Membrane Proteins/chemistry , Proline/chemistry , Protein Binding , Sinorhizobium meliloti/enzymology , Stereoisomerism
12.
Inorg Chem ; 60(19): 15010-15023, 2021 Oct 04.
Article in English | MEDLINE | ID: mdl-34533947

ABSTRACT

A novel catalyst has been afforded by attaching of a Cu(proline)2 complex to magnetic nanoparticles through cheap, simple, and readily available chemicals. This catalyst was characterized by Fourier transform infrared, energy-dispersive X-ray, X-ray diffraction, vibrating-sample magnetometry, transmission electron microscopy, scanning electron microscopy, and inductively coupled plasma analyses. The catalytic activity of the Fe3O4@NH2@TCT@HProCu nanocatalyst was investigated in a green and effective synthesis of pyran derivatives in high yields by applying three-component reactions of malononitrile, dimedone, and aldehydes in ethanol. Conversion was high under optimal conditions. The obtained nanocatalyst could be easily separated from the mixture of the reaction and was recyclable nine times via a simple magnet without considerable reduction of its catalytic efficiency. Operational simplicity, high product yields, environmental friendliness, ecofriendliness, economical processing, and easy workup are the features of this methodology.


Subject(s)
Coordination Complexes/chemistry , Copper/chemistry , Hydroxyproline/chemistry , Magnetite Nanoparticles/chemistry , Pyrans/chemical synthesis , Catalysis , Coordination Complexes/chemical synthesis , Cyclization , Molecular Structure , Pyrans/chemistry
13.
Bioorg Med Chem ; 48: 116398, 2021 10 15.
Article in English | MEDLINE | ID: mdl-34547714

ABSTRACT

Despite the success of imatinib in CML therapy through Bcr-Abl inhibition, acquired drug resistance occurs over time in patients. In particular, the resistance caused by T315I mutation remains a challenge in clinic. Herein, we embarked on a structural optimization campaign aiming at discovery of novel Bcr-Abl inhibitors toward T315I mutant based on previously reported dibenzoylpiperazin derivatives. We proposed that incorporation of flexible linker could achieve potent inhibition of Bcr-AblT315I by avoiding steric clash with bulky sidechain of Ile315. A library of 28 compounds with amino acids as linker has been developed and evaluated. Among them, compound AA2 displayed the most potent activity against Bcr-AblWT and Bcr-AblT315I, as well as toward Bcr-Abl driven K562 and K562R cells. Further investigations indicated that AA2 could induce apoptosis of K562 cells and down regulate phosphorylation of Bcr-Abl. In summary, the compounds with amino acid as novel flexible linker exhibited certain antitumor activities, providing valuable hints for the discovery of novel Bcr-Abl inhibitors to overcome T315I mutant resistance, and AA2 could be considered as a candidate for further optimization.


Subject(s)
Alanine/pharmacology , Drug Design , Fusion Proteins, bcr-abl/antagonists & inhibitors , Hydroxyproline/pharmacology , Protein Kinase Inhibitors/pharmacology , Alanine/chemical synthesis , Alanine/chemistry , Dose-Response Relationship, Drug , Fusion Proteins, bcr-abl/metabolism , Humans , Hydroxyproline/chemical synthesis , Hydroxyproline/chemistry , K562 Cells , Molecular Structure , Protein Kinase Inhibitors/chemical synthesis , Protein Kinase Inhibitors/chemistry , Structure-Activity Relationship
14.
Chem Pharm Bull (Tokyo) ; 69(7): 652-660, 2021.
Article in English | MEDLINE | ID: mdl-34193714

ABSTRACT

The hydrocarbon-chain packing structure of intercellular lipids in the stratum corneum (SC) is critical to the skin's barrier function. We previously found that formation of V-shaped ceramide reduces the barrier function of skin. There are few agents, apart from ceramides and fatty acids that can improve the orthorhombic packing (Orth) ratio of the intercellular lipid packing structure. In this study, we investigated agents that directly increase the Orth ratio. We selected an intercellular lipid model consisting of ceramide, cholesterol, and palmitic acid and performed differential scanning calorimetry. We focused on natural moisturizing factor components in the SC, and therefore investigated amino acids and their derivatives. The results of our intercellular lipid model-based study indicate that N-acetyl-L-hydroxyproline (AHYP), remarkably, maintains the lamellar structure. We verified the effect of AHYP on the lamellar structure and hydrocarbon chain packing structure of intercellular lipids using time-resolved X-ray diffraction measurements of human SC. We also determined the direct physicochemical effects of AHYP on the Orth ratio of the hydrocarbon-chain packing structure. Hence, the results of our human SC study suggest that AHYP preserves skin barrier function by maintaining the hydrocarbon-chain packing structure of intercellular lipids via electrostatic repulsion. These findings will facilitate the development of skincare formulation that can maintain the skin's barrier function.


Subject(s)
Amino Acids/metabolism , Skin Absorption , Acetylation , Amino Acids/chemistry , Calorimetry, Differential Scanning , Cholesterol/chemistry , Epidermis/chemistry , Humans , Hydroxyproline/chemistry , Hydroxyproline/metabolism , Lipid Bilayers/chemistry , Lipid Bilayers/metabolism , Nanostructures/chemistry , Palmitic Acid/chemistry , Scattering, Small Angle , X-Ray Diffraction
15.
Chem Biodivers ; 18(8): e2100293, 2021 Aug.
Article in English | MEDLINE | ID: mdl-34156756

ABSTRACT

Acid-soluble, undenatured, type I collagen (BSC) isolated, for the first time, from gilthead bream skin and the novel fabricated 3D porous wound dressing were analyzed for physicochemical and biological properties, in order to offer a safe alternative to commercial bovine collagen (BC) products. SDS-polyacrylamide analysis confirmed the purity of BSC preparation. The hydroxyproline content and temperature of denaturation of BSC were lower than those of BC, in accordance with the structural data recorded by FT-IR spectroscopy. However, certain concentrations of BSC stimulated the cell metabolism of L929 fibroblasts in a higher proportion than BC. The 3D wound dressing presented high porosity and low surface hydrophobicity that could help cell attachment and growth. The rapid biodegradation of BSC wound dressing could explain the improved in vitro cell migration and wound closure rate. In conclusion, the skin of gilthead bream from the Black Sea coast represented a valuable source for the biomedical industry, providing biocompatible, biodegradable collagen and 3D porous wound dressing, as novel material with enhanced wound healing activity.


Subject(s)
Bandages , Collagen Type I/pharmacology , Sea Bream/metabolism , Skin/metabolism , Wound Healing/drug effects , Animals , Black Sea , Cell Line , Cell Survival/drug effects , Collagen Type I/isolation & purification , Collagen Type I/metabolism , Fibroblasts/cytology , Fibroblasts/metabolism , Hydroxyproline/chemistry , Hydroxyproline/metabolism , Mice , Molecular Weight , Porosity , Protein Denaturation , Spectroscopy, Fourier Transform Infrared , Transition Temperature
16.
Int J Mol Sci ; 22(14)2021 Jul 14.
Article in English | MEDLINE | ID: mdl-34299166

ABSTRACT

As cell wall proteins, the hydroxyproline-rich glycoproteins (HRGPs) take part in plant growth and various developmental processes. To fulfil their functions, HRGPs, extensins (EXTs) in particular, undergo the hydroxylation of proline by the prolyl-4-hydroxylases. The activity of these enzymes can be inhibited with 3,4-dehydro-L-proline (3,4-DHP), which enables its application to reveal the functions of the HRGPs. Thus, to study the involvement of HRGPs in the development of root hairs and roots, we treated seedlings of Brachypodium distachyon with 250 µM, 500 µM, and 750 µM of 3,4-DHP. The histological observations showed that the root epidermis cells and the cortex cells beneath them ruptured. The immunostaining experiments using the JIM20 antibody, which recognizes the EXT epitopes, demonstrated the higher abundance of this epitope in the control compared to the treated samples. The transmission electron microscopy analyses revealed morphological and ultrastructural features that are typical for the vacuolar-type of cell death. Using the TUNEL test (terminal deoxynucleotidyl transferase dUTP nick end labelling), we showed an increase in the number of nuclei with damaged DNA in the roots that had been treated with 3,4-DHP compared to the control. Finally, an analysis of two metacaspases' gene activity revealed an increase in their expression in the treated roots. Altogether, our results show that inhibiting the prolyl-4-hydroxylases with 3,4-DHP results in a vacuolar-type of cell death in roots, thereby highlighting the important role of HRGPs in root hair development and root growth.


Subject(s)
Apoptosis , Brachypodium/drug effects , Gene Expression Regulation, Plant , Plant Proteins/metabolism , Plant Roots/drug effects , Proline/pharmacology , Brachypodium/metabolism , Hydroxyproline/chemistry , Plant Proteins/genetics , Plant Roots/metabolism , Proline/analogs & derivatives
17.
Molecules ; 26(3)2021 Jan 29.
Article in English | MEDLINE | ID: mdl-33573083

ABSTRACT

Collagen contains hydroxyproline (Hyp), which is a unique amino acid. Three collagen-derived small peptides (Gly-Pro-Hyp, Pro-Hyp, and Gly-Hyp) interacting across a lipid bilayer (POPC model membrane) for cellular uptakes of these collagen-derived small peptides were studied using accelerated molecular dynamics simulation. The ligands were investigated for their binding modes, hydrogen bonds in each coordinate frame, and mean square displacement (MSD) in the Z direction. The lipid bilayers were evaluated for mass and electron density profiles of the lipid molecules, surface area of the head groups, and root mean square deviation (RMSD). The simulation results show that hydrogen bonding between the small collagen peptides and plasma membrane plays a significant role in their internalization. The translocation of the small collagen peptides across the cell membranes was shown. Pro-Hyp laterally condensed the membrane, resulting in an increase in the bilayer thickness and rigidity. Perception regarding molecular behaviors of collagen-derived peptides within the cell membrane, including their interactions, provides the novel design of specific bioactive collagen peptides for their applications.


Subject(s)
Collagen/chemistry , Lipid Bilayers/chemistry , Peptides/chemistry , Amino Acid Sequence/genetics , Biological Transport/genetics , Circular Dichroism , Collagen/genetics , Computer Simulation , Dipeptides/chemistry , Dipeptides/genetics , Hydrogen Bonding/drug effects , Hydroxyproline/chemistry , Peptides/genetics , Protein Binding/genetics , Protein Conformation
18.
Biotechnol Bioeng ; 117(4): 945-958, 2020 04.
Article in English | MEDLINE | ID: mdl-31930479

ABSTRACT

Reconstructing the chemical and structural characteristics of the plant cell wall represents a promising solution to overcoming lignocellulosic biomass recalcitrance to biochemical deconstruction. This study aims to leverage hydroxyproline (Hyp)-O-glycosylation, a process unique to plant cell wall glycoproteins, as an innovative technology for de novo design and engineering in planta of Hyp-O-glycosylated biopolymers (HypGP) that facilitate plant cell wall reconstruction. HypGP consisting of 18 tandem repeats of "Ser-Hyp-Hyp-Hyp-Hyp" motif or (SP4)18 was designed and engineered into tobacco plants as a fusion peptide with either a reporter protein enhanced green fluorescence protein or the catalytic domain of a thermophilic E1 endoglucanase (E1cd) from Acidothermus cellulolyticus. The engineered (SP4)18 module was extensively Hyp-O-glycosylated with arabino-oligosaccharides, which facilitated the deposition of the fused protein/enzyme in the cell wall matrix and improved the accumulation of the protein/enzyme in planta by 1.5-11-fold. The enzyme activity of the recombinant E1cd was not affected by the fused (SP4)18 module, showing an optimal temperature of 80°C and optimal pH between 5 and 8. The plant biomass engineered with the (SP4)18 -tagged protein/enzyme increased the biomass saccharification efficiency by up to 3.5-fold without having adverse impact on the plant growth.


Subject(s)
Biopolymers , Cell Wall , Genetic Engineering/methods , Plants, Genetically Modified , Recombinant Fusion Proteins , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biomass , Biopolymers/chemistry , Biopolymers/genetics , Biopolymers/metabolism , Cell Wall/chemistry , Cell Wall/metabolism , Cellulase/chemistry , Cellulase/genetics , Cellulase/metabolism , Glycoproteins , Glycosylation , Hydroxyproline/chemistry , Hydroxyproline/genetics , Hydroxyproline/metabolism , Plant Proteins , Plants, Genetically Modified/cytology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Nicotiana/cytology , Nicotiana/genetics , Nicotiana/metabolism
19.
Analyst ; 145(6): 2233-2237, 2020 Mar 16.
Article in English | MEDLINE | ID: mdl-32064468

ABSTRACT

The discriminative monitoring of biothiols in biological fluids is a great challenge. Herein, we developed a fluorescence "turn-off-on" probe based on AuNCs-AuNPs ensembles, which detected l-cysteine (l-Cys) with high selectivity. The strong blue fluorescence of l-hydroxyproline-capped gold nanoclusters (l-Hyp@AuNCs) at 465 nm was quenched by AuNPs via the inner filter effect. Interestingly, the fluorescence was recovered by interaction with l-Cys due to the electrostatic and specific Au-S interactions between l-Cys and AuNPs. The effect of the l-Cys amount on the fluorescence "off-on" efficiency showed good linearity in the range of 1.5-35.0 µM (R2 = 0.986) with a detection limit of 1.4 µM (3σ). The proposed method was successfully applied to test the serum l-Cys levels without the interference of glutathione, homocysteine and methionine. The AuNCs-AuNPs ensembles-based fluorescence "turn-off-on" protocol shows great potential in specific biothiol sensing.


Subject(s)
Cysteine/blood , Fluorescent Dyes/chemistry , Metal Nanoparticles/chemistry , Fluorescent Dyes/radiation effects , Gold/chemistry , Gold/radiation effects , Humans , Hydroxyproline/chemistry , Hydroxyproline/radiation effects , Light , Limit of Detection , Metal Nanoparticles/radiation effects , Spectrometry, Fluorescence/methods
20.
Int J Mol Sci ; 21(11)2020 Jun 11.
Article in English | MEDLINE | ID: mdl-32545390

ABSTRACT

The N-methyl-(2S,4R)-trans-4-hydroxy-l-proline-enriched fraction (NMP) from Sideroxylon obtusifolium was evaluated as a neuroprotective agent in the intracerebroventricular (icv) pilocarpine (Pilo) model. To this aim, male mice were subdivided into sham (SO, vehicle), Pilo (300 µg/1 µL icv, followed by the vehicle per os, po) and NMP-treated groups (Pilo 300 µg/1 µL icv, followed by 100 or 200 mg/kg po). The treatments started one day after the Pilo injection and continued for 15 days. The effects of NMP were assessed by characterizing the preservation of cognitive function in both the Y-maze and object recognition tests. The hippocampal cell viability was evaluated by Nissl staining. Additional markers of damage were studied-the glial fibrillary acidic protein (GFAP) and the ionized calcium-binding adaptor molecule 1 (Iba-1) expression using, respectively, immunofluorescence and western blot analyses. We also performed molecular docking experiments revealing that NMP binds to the γ-aminobutyric acid (GABA) transporter 1 (GAT1). GAT1 expression in the hippocampus was also characterized. Pilo induced cognitive deficits, cell damage, increased GFAP, Iba-1, and GAT1 expression in the hippocampus. These alterations were prevented, especially by the higher NMP dose. These data highlight NMP as a promising candidate for the protection of the hippocampus, as shown by the icv Pilo model.


Subject(s)
Hippocampus/drug effects , Hydroxyproline/pharmacology , Neuroprotective Agents/pharmacology , Sapotaceae/chemistry , Status Epilepticus/pathology , Animals , Behavior, Animal/drug effects , Calcium-Binding Proteins/metabolism , Cell Survival/drug effects , GABA Plasma Membrane Transport Proteins/chemistry , GABA Plasma Membrane Transport Proteins/metabolism , Glial Fibrillary Acidic Protein/metabolism , Hippocampus/metabolism , Hippocampus/pathology , Humans , Hydroxyproline/chemistry , Infusions, Intraventricular , Male , Mice , Microfilament Proteins/metabolism , Molecular Docking Simulation , Neurons/drug effects , Neurons/pathology , Neuroprotective Agents/chemistry , Pilocarpine/administration & dosage , Pilocarpine/toxicity , Plants, Medicinal/chemistry , Status Epilepticus/chemically induced
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