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1.
J Biol Chem ; 299(9): 105046, 2023 09.
Article in English | MEDLINE | ID: mdl-37453661

ABSTRACT

Ferredoxins are a family of iron-sulfur (Fe-S) cluster proteins that serve as essential electron donors in numerous cellular processes that are conserved through evolution. The promiscuous nature of ferredoxins as electron donors enables them to participate in many metabolic processes including steroid, heme, vitamin D, and Fe-S cluster biosynthesis in different organisms. However, the unique natural function(s) of each of the two human ferredoxins (FDX1 and FDX2) are still poorly characterized. We recently reported that FDX1 is both a crucial regulator of copper ionophore-induced cell death and serves as an upstream regulator of cellular protein lipoylation, a mitochondrial lipid-based post-translational modification naturally occurring on four mitochondrial enzymes that are crucial for TCA cycle function. Here we show that FDX1 directly regulates protein lipoylation by binding the lipoyl synthase (LIAS) enzyme promoting its functional binding to the lipoyl carrier protein GCSH and not through indirect regulation of cellular Fe-S cluster biosynthesis. Metabolite profiling revealed that the predominant cellular metabolic outcome of FDX1 loss of function is manifested through the regulation of the four lipoylation-dependent enzymes ultimately resulting in loss of cellular respiration and sensitivity to mild glucose starvation. Transcriptional profiling established that FDX1 loss-of-function results in the induction of both compensatory metabolism-related genes and the integrated stress response, consistent with our findings that FDX1 loss-of-function is conditionally lethal. Together, our findings establish that FDX1 directly engages with LIAS, promoting its role in cellular protein lipoylation, a process essential in maintaining cell viability under low glucose conditions.


Subject(s)
Ferredoxins , Lipoylation , Sulfurtransferases , Humans , Ferredoxins/genetics , Ferredoxins/metabolism , Lipoylation/genetics , Protein Binding , Cell Respiration/genetics , Cell Proliferation/genetics , Metabolome , Sulfurtransferases/metabolism
2.
J Virol ; 97(10): e0124523, 2023 10 31.
Article in English | MEDLINE | ID: mdl-37792001

ABSTRACT

IMPORTANCE: Influenza viruses are a public health concern since they cause seasonal outbreaks and occasionally pandemics. Our study investigates the importance of a protein modification called "palmitoylation" in the replication of influenza B virus. Palmitoylation involves attaching fatty acids to the viral protein hemagglutinin and has previously been studied for influenza A virus. We found that this modification is important for the influenza B virus to replicate, as mutating the sites where palmitate is attached prevented the virus from generating viable particles. Our experiments also showed that this modification occurs in the endoplasmic reticulum. We identified the specific enzymes responsible for this modification, which are different from those involved in palmitoylation of HA of influenza A virus. Overall, our research illuminates the similarities and differences in fatty acid attachment to HA of influenza A and B viruses and identifies the responsible enzymes, which might be promising targets for anti-viral therapy.


Subject(s)
Acyltransferases , Endoplasmic Reticulum , Hemagglutinin Glycoproteins, Influenza Virus , Influenza B virus , Lipoylation , Palmitic Acid , Virus Replication , Humans , Acyltransferases/metabolism , Endoplasmic Reticulum/enzymology , Endoplasmic Reticulum/virology , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Influenza A virus/chemistry , Influenza A virus/metabolism , Influenza B virus/chemistry , Influenza B virus/growth & development , Influenza B virus/metabolism , Influenza, Human/drug therapy , Influenza, Human/virology , Lipoylation/genetics , Mutation , Palmitic Acid/metabolism
3.
Plant Physiol ; 188(2): 997-1013, 2022 02 04.
Article in English | MEDLINE | ID: mdl-34718778

ABSTRACT

Plants have evolutionarily conserved NifU (NFU)-domain proteins that are targeted to plastids or mitochondria. "Plastid-type" NFU1, NFU2, and NFU3 in Arabidopsis (Arabidopsis thaliana) play a role in iron-sulfur (Fe-S) cluster assembly in this organelle, whereas the type-II NFU4 and NFU5 proteins have not been subjected to mutant studies in any plant species to determine their biological role. Here, we confirmed that NFU4 and NFU5 are targeted to the mitochondria. The proteins were constitutively produced in all parts of the plant, suggesting a housekeeping function. Double nfu4 nfu5 knockout mutants were embryonic lethal, and depletion of NFU4 and NFU5 proteins led to growth arrest of young seedlings. Biochemical analyses revealed that NFU4 and NFU5 are required for lipoylation of the H proteins of the glycine decarboxylase complex and the E2 subunits of other mitochondrial dehydrogenases, with little impact on Fe-S cluster-containing respiratory complexes or aconitase. Consequently, the Gly-to-Ser ratio was increased in mutant seedlings and early growth improved with elevated CO2 treatment. In addition, pyruvate, 2-oxoglutarate, and branched-chain amino acids accumulated in nfu4 nfu5 mutants, further supporting defects in the other three mitochondrial lipoate-dependent enzyme complexes. NFU4 and NFU5 interacted with mitochondrial lipoyl synthase (LIP1) in yeast 2-hybrid and bimolecular fluorescence complementation assays. These data indicate that NFU4 and NFU5 have a more specific function than previously thought, most likely providing Fe-S clusters to lipoyl synthase.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Iron-Sulfur Proteins/genetics , Iron-Sulfur Proteins/metabolism , Lipoylation/genetics , Mitochondria/genetics , Mitochondria/metabolism , Gene Expression Regulation, Plant , Genes, Plant , Genetic Variation , Genotype , Mutation
4.
J Biol Chem ; 296: 100311, 2021.
Article in English | MEDLINE | ID: mdl-33482200

ABSTRACT

ZAP-70 is a tyrosine kinase essential for T cell immune responses. Upon engagement of the T cell receptor (TCR), ZAP-70 is recruited to the specialized plasma membrane domains, becomes activated, and is released to phosphorylate its laterally segregated targets. A shift in ZAP-70 distribution at the plasma membrane is recognized as a critical step in TCR signal transduction and amplification. However, the molecular mechanism supporting stimulation-dependent plasma membrane compartmentalization of ZAP-70 remains poorly understood. In this study, we identified previously uncharacterized lipidation (S-acylation) of ZAP-70 using Acyl-Biotin Exchange assay, a technique that selectively captures S-acylated proteins. We found that this posttranslational modification of ZAP-70 is dispensable for its enzymatic activity. However, the lipidation-deficient mutant of ZAP-70 failed to propagate the TCR pathway suggesting that S-acylation is essential for ZAP-70 interaction with its protein substrates. The kinetics of ZAP-70 S-acylation were consistent with TCR signaling events indicating that agonist-induced S-acylation is a part of the signaling mechanism controlling T cell activation and function. Taken together, our results suggest that TCR-induced S-acylation of ZAP-70 can serve as a critical regulator of T cell-mediated immunity.


Subject(s)
Immunity, Cellular/genetics , Receptors, Antigen, T-Cell/genetics , T-Lymphocytes/immunology , ZAP-70 Protein-Tyrosine Kinase/genetics , Acylation/genetics , Acyltransferases/chemistry , Acyltransferases/genetics , Cell Membrane/chemistry , Cell Membrane/genetics , Gene Expression Regulation, Enzymologic/genetics , Humans , Immunity, Cellular/immunology , Lipoylation/genetics , Mutation/genetics , Protein Processing, Post-Translational/genetics , Receptors, Antigen, T-Cell/immunology , Signal Transduction/genetics , Substrate Specificity/genetics , T-Lymphocytes/chemistry , ZAP-70 Protein-Tyrosine Kinase/chemistry
5.
Blood ; 135(20): 1772-1782, 2020 05 14.
Article in English | MEDLINE | ID: mdl-32219446

ABSTRACT

Oncogenic RAS mutations pose substantial challenges for rational drug discovery. Sequence variations within the hypervariable region of Ras isoforms underlie differential posttranslational modification and subcellular trafficking, potentially resulting in selective vulnerabilities. Specifically, inhibiting the palmitoylation/depalmitoylation cycle is an appealing strategy for treating NRAS mutant cancers, particularly as normal tissues would retain K-Ras4b function for physiologic signaling. The role of endogenous N-RasG12D palmitoylation in signal transduction, hematopoietic differentiation, and myeloid transformation is unknown, and addressing these key questions will inform efforts to develop mechanism-based therapies. To evaluate the palmitoylation/depalmitoylation cycle as a candidate drug target in an in vivo disease-relevant model system, we introduced a C181S mutation into a conditional NrasG12D "knock-in" allele. The C181S second-site amino acid substitution abrogated myeloid transformation by NrasG12D, which was associated with mislocalization of the nonpalmitoylated N-Ras mutant protein, reduced Raf/MEK/ERK signaling, and alterations in hematopoietic stem and progenitor populations. Furthermore, hematologic malignancies arising in NrasG12D/G12D,C181S compound heterozygous mice invariably acquired revertant mutations that restored cysteine 181. Together, these studies validate the palmitoylation cycle as a promising therapeutic target in NRAS mutant cancers.


Subject(s)
Cell Transformation, Neoplastic/genetics , Hematologic Neoplasms/genetics , Hematopoiesis/genetics , Lipoylation/genetics , Monomeric GTP-Binding Proteins/genetics , Monomeric GTP-Binding Proteins/metabolism , Amino Acid Substitution , Animals , Aspartic Acid/genetics , Cell Transformation, Neoplastic/metabolism , Cells, Cultured , Glycine/genetics , Hematologic Neoplasms/metabolism , Hematopoietic Stem Cells/physiology , Metabolic Networks and Pathways/genetics , Mice , Mice, Transgenic , Palmitic Acid/metabolism
6.
J Biol Chem ; 295(13): 4289-4302, 2020 03 27.
Article in English | MEDLINE | ID: mdl-32079676

ABSTRACT

Tricellular tight junctions (tTJs) create paracellular barriers at tricellular contacts (TCs), where the vertices of three polygonal epithelial cells meet. tTJs are marked by the enrichment of two types of membrane proteins, tricellulin and angulin family proteins. However, how TC geometry is recognized for tTJ formation remains unknown. In the present study, we examined the molecular mechanism for the assembly of angulin-1 at the TCs. We found that clusters of cysteine residues in the juxtamembrane region within the cytoplasmic domain of angulin-1 are highly palmitoylated. Mutagenesis analyses of the cysteine residues in this region revealed that palmitoylation is essential for localization of angulin-1 at TCs. Consistently, suppression of Asp-His-His-Cys motif-containing palmitoyltransferases expressed in EpH4 cells significantly impaired the TC localization of angulin-1. Cholesterol depletion from the plasma membrane of cultured epithelial cells hampered the localization of angulin-1 at TCs, suggesting the existence of a lipid membrane microdomain at TCs that attracts highly palmitoylated angulin-1. Furthermore, the extracellular domain of angulin-1 was also required for its TC localization, irrespective of the intracellular palmitoylation. Taken together, our findings suggest that both angulin-1's extracellular domain and palmitoylation of its cytoplasmic region are required for its assembly at TCs.


Subject(s)
Cholesterol/genetics , Lipoylation/genetics , Membrane Microdomains/genetics , Receptors, Lipoprotein/genetics , Cell Communication/genetics , Cholesterol/metabolism , Cysteine/chemistry , Cysteine/genetics , Epithelial Cells/metabolism , Humans , Intercellular Junctions/genetics , MARVEL Domain Containing 2 Protein , Membrane Microdomains/chemistry , Protein Domains/genetics , Protein Processing, Post-Translational/genetics , Receptors, Lipoprotein/chemistry , Tight Junctions/genetics , Tight Junctions/metabolism
7.
J Cell Physiol ; 236(5): 3220-3233, 2021 05.
Article in English | MEDLINE | ID: mdl-33094504

ABSTRACT

Protein palmitoylation, in which C16 fatty acid chains are attached to cysteine residues via a reversible thioester linkage, is one of the most common lipid modifications and plays important roles in regulating protein stability, subcellular localization, membrane trafficking, interactions with effector proteins, enzymatic activity, and a variety of other cellular processes. Moreover, the unique reversibility of palmitoylation allows proteins to be rapidly shuttled between biological membranes and cytoplasmic substrates in a process usually controlled by a member of the DHHC family of protein palmitoyl transferases (PATs). Notably, mutations in PATs are closely related to a variety of human diseases, such as cancer, neurological disorders, and immune deficiency conditions. In addition to PATs, intracellular palmitoylation dynamics are also regulated by the interplay between distinct posttranslational modifications, including ubiquitination and phosphorylation. Understanding the specific mechanisms of palmitoylation may reveal novel potential therapeutic targets for many human diseases.


Subject(s)
Acyltransferases/metabolism , Lipoylation/genetics , Membrane Proteins/metabolism , Protein Processing, Post-Translational/physiology , Animals , DNA Methylation/physiology , Humans , Substrate Specificity/physiology
8.
Neurobiol Dis ; 158: 105479, 2021 10.
Article in English | MEDLINE | ID: mdl-34390831

ABSTRACT

Huntington disease (HD) is a neurodegenerative disorder caused by a CAG expansion in the HTT gene that codes for an elongated polyglutamine tract in the huntingtin (HTT) protein. HTT is subject to multiple post-translational modifications (PTMs) that regulate its cellular function. Mutating specific PTM sites within mutant HTT (mHTT) in HD mouse models can modulate disease phenotypes, highlighting the key role of HTT PTMs in the pathogenesis of HD. These findings have led to increased interest in developing small molecules to modulate HTT PTMs in order to decrease mHTT toxicity. However, the therapeutic efficacy of pharmacological modulation of HTT PTMs in preclinical HD models remains largely unknown. HTT is palmitoylated at cysteine 214 by the huntingtin-interacting protein 14 (HIP14 or ZDHHC17) and 14-like (HIP14L or ZDHHC13) acyltransferases. Here, we assessed if HTT palmitoylation should be regarded as a therapeutic target to treat HD by (1) investigating palmitoylation dysregulation in rodent and human HD model systems, (2) measuring the impact of mHTT-lowering therapy on brain palmitoylation, and (3) evaluating if HTT palmitoylation can be pharmacologically modulated. We show that palmitoylation of mHTT and some HIP14/HIP14L-substrates is decreased early in multiple HD mouse models, and that mHTT palmitoylation decreases further with aging. Lowering mHTT in the brain of YAC128 mice is not sufficient to rescue aberrant palmitoylation. However, we demonstrate that mHTT palmitoylation can be normalized in COS-7 cells, in YAC128 cortico-striatal primary neurons and HD patient-derived lymphoblasts using an acyl-protein thioesterase (APT) inhibitor. Moreover, we show that modulating palmitoylation reduces mHTT aggregation and mHTT-induced cytotoxicity in COS-7 cells and YAC128 neurons.


Subject(s)
Huntingtin Protein/genetics , Huntingtin Protein/toxicity , Lipoylation/drug effects , Lipoylation/genetics , Acyltransferases/genetics , Adaptor Proteins, Signal Transducing/genetics , Animals , COS Cells , Cell Line , Chlorocebus aethiops , Cysteine/chemistry , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/therapeutic use , Female , Humans , Lymphocytes/drug effects , Lymphocytes/metabolism , Male , Mice , Mutation , Nerve Tissue Proteins/genetics , Neurons/drug effects , Neurons/metabolism , Rats
9.
Mol Microbiol ; 113(2): 504-520, 2020 02.
Article in English | MEDLINE | ID: mdl-31782837

ABSTRACT

Mycobacterium tuberculosis (Mtb), the etiologic agent of tuberculosis, must adapt to host-associated environments during infection by modulating gene expression. Small regulatory RNAs (sRNAs) are key regulators of bacterial gene expression, but their roles in Mtb are not well understood. Here, we address the expression and function of the Mtb sRNA Mcr11, which is associated with slow bacterial growth and chronic infections in mice. We found that stable expression of Mcr11 requires multiple factors specific to TB-complex bacteria, including the AbmR transcription factor. Bioinformatic analyses used to predict regulatory targets of Mcr11 identified 7-11 nucleotide regions with potential for direct base-pairing with Mcr11 immediately upstream of Rv3282, fadA3, and lipB. mcr11-dependent regulation of these genes was demonstrated using qRT-PCR and found to be responsive to the presence of fatty acids. Mutation of the putative Mcr11 base-pairing site upstream of lipB in a promoter reporter strain resulted in significant de-repression of lipB expression, similar to that observed in mcr11-deleted Mtb. These studies establish Mcr11's roles in regulating growth and central metabolism in Mtb. Our finding that multiple TB-complex-specific factors are required for production of stable Mcr11 also emphasizes the need to better understand mechanisms of sRNA expression and stability in TB.


Subject(s)
Gene Expression Regulation, Bacterial/physiology , Mycobacterium tuberculosis , RNA, Small Untranslated/metabolism , Transcription Factors/metabolism , Animals , Bacterial Proteins/metabolism , Computational Biology , Genes, Bacterial , Lipoylation/genetics , Mice , Mycobacterium tuberculosis/genetics , Mycobacterium tuberculosis/metabolism , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , RNA, Small Untranslated/genetics , Real-Time Polymerase Chain Reaction
10.
Cell Microbiol ; 22(9): e13212, 2020 09.
Article in English | MEDLINE | ID: mdl-32329212

ABSTRACT

The phylum Apicomplexa includes a number of significant human pathogens like Toxoplasma gondii and Plasmodium species. These obligate intracellular parasites possess a membranous structure, the inner membrane complex (IMC), composed of flattened vesicles apposed to the plasma membrane. Numerous proteins associated with the IMC are anchored via a lipid post-translational modification termed palmitoylation. This acylation is catalysed by multi-membrane spanning protein S-acyl-transferases (PATs) containing a catalytic Asp-His-His-Cys (DHHC) motif, commonly referred to as DHHCs. Contrasting the redundancy observed in other organisms, several PATs are essential for T. gondii tachyzoite survival; 2 of them, TgDHHC2 and TgDHHC14 being IMC-resident. Disruption of either of these TgDHHCs results in a rapid collapse of the IMC in the developing daughter cells leading to dramatic morphological defects of the parasites while the impact on the other organelles is limited to their localisation but not to their biogenesis. The acyl-transferase activity of TgDHHC2 and TgDHHC14 is involved sequentially in the formation of the sub-compartments of the IMC. Investigation of proteins known to be palmitoylated and localised to these sub-compartments identified TgISP1/3 as well as TgIAP1/2 to lose their membrane association revealing them as likely substrates of TgDHHC2, while these proteins are not impacted by TgDHHC14 depletion.


Subject(s)
Acyltransferases/metabolism , Intracellular Membranes/physiology , Lipoylation/genetics , Organelle Biogenesis , Toxoplasma/enzymology , Toxoplasma/physiology , Acylation , Acyltransferases/classification , Acyltransferases/genetics , Lipoylation/physiology , Protein Processing, Post-Translational , Toxoplasma/genetics
11.
J Biol Chem ; 294(10): 3419-3431, 2019 03 08.
Article in English | MEDLINE | ID: mdl-30587577

ABSTRACT

Several protein kinases, including protein kinase C, Ca2+/calmodulin-dependent protein kinase II, and extracellular signal-regulated kinase, play key roles in the regulation of dopamine transporter (DAT) functions. These functions include surface expression, internalization, and forward and reverse transport, with phosphorylation sites for these kinases being linked to distinct regions of the DAT N terminus. Protein phosphatases (PPs) also regulate DAT activity, but the specific residues associated with their activities have not yet been elucidated. In this study, using co-immunoprecipitation followed by MS and immunoblotting analyses, we demonstrate the association of DAT with PP1 and PP2A in the mouse brain and heterologous cell systems. By applying MS in conjunction with a metabolic labeling method, we defined a PP1/2A-sensitive phosphorylation site at Thr-48 in human DAT, a residue that has not been previously reported to be involved in DAT phosphorylation. Site-directed mutagenesis of Thr-48 to Ala (T48A) to prevent phosphorylation enhanced dopamine transport kinetics, supporting a role for this residue in regulating DAT activity. Moreover, T48A-DAT displayed increased palmitoylation, suggesting that phosphorylation/dephosphorylation at this site has an additional regulatory role and reinforcing a previously reported reciprocal relationship between C-terminal palmitoylation and N-terminal phosphorylation.


Subject(s)
Brain/metabolism , Dopamine Plasma Membrane Transport Proteins/metabolism , Dopamine/metabolism , Protein Phosphatase 1/metabolism , Protein Phosphatase 2/metabolism , Animals , Biological Transport, Active/physiology , Dopamine/genetics , Dopamine Plasma Membrane Transport Proteins/genetics , Humans , Lipoylation/genetics , Mice , Mice, Knockout , Phosphorylation , Protein Phosphatase 1/genetics , Protein Phosphatase 2/genetics , Threonine/genetics , Threonine/metabolism
12.
Am J Hum Genet ; 101(2): 283-290, 2017 Aug 03.
Article in English | MEDLINE | ID: mdl-28757203

ABSTRACT

Lipoate serves as a cofactor for the glycine cleavage system (GCS) and four 2-oxoacid dehydrogenases functioning in energy metabolism (α-oxoglutarate dehydrogenase [α-KGDHc] and pyruvate dehydrogenase [PDHc]), or amino acid metabolism (branched-chain oxoacid dehydrogenase, 2-oxoadipate dehydrogenase). Mitochondrial lipoate synthesis involves three enzymatic steps catalyzed sequentially by lipoyl(octanoyl) transferase 2 (LIPT2), lipoic acid synthetase (LIAS), and lipoyltransferase 1 (LIPT1). Mutations in LIAS have been associated with nonketotic hyperglycinemia-like early-onset convulsions and encephalopathy combined with a defect in mitochondrial energy metabolism. LIPT1 deficiency spares GCS deficiency and has been associated with a biochemical signature of combined 2-oxoacid dehydrogenase deficiency leading to early death or Leigh-like encephalopathy. We report on the identification of biallelic LIPT2 mutations in three affected individuals from two families with severe neonatal encephalopathy. Brain MRI showed major cortical atrophy with white matter abnormalities and cysts. Plasma glycine was mildly increased. Affected individuals' fibroblasts showed reduced oxygen consumption rates, PDHc, α-KGDHc activities, leucine catabolic flux, and decreased protein lipoylation. A normalization of lipoylation was observed after expression of wild-type LIPT2, arguing for LIPT2 requirement in intramitochondrial lipoate synthesis. Lipoic acid supplementation did not improve clinical condition nor activities of PDHc, α-KGDHc, or leucine metabolism in fibroblasts and was ineffective in yeast deleted for the orthologous LIP2.


Subject(s)
Acyltransferases/genetics , Atrophy/pathology , Brain Diseases/genetics , Brain/pathology , Lipoylation/genetics , Mitochondria/metabolism , Amino Acids/metabolism , Brain/diagnostic imaging , Brain Diseases/pathology , Brain Mapping/methods , Cells, Cultured , Energy Metabolism/genetics , Energy Metabolism/physiology , Glycine/blood , Humans , Infant, Newborn , Magnetic Resonance Imaging , Mitochondria/genetics , Oxygen Consumption/genetics , Protein Binding/genetics , Thioctic Acid/metabolism
13.
EMBO Rep ; 19(10)2018 10.
Article in English | MEDLINE | ID: mdl-30232163

ABSTRACT

Protein S-palmitoylation is a reversible post-translational modification that alters the localization, stability, and function of hundreds of proteins in the cell. S-palmitoylation is essential for the function of both oncogenes (e.g., NRAS and EGFR) and tumor suppressors (e.g., SCRIB, melanocortin 1 receptor). In mammalian cells, the thioesterification of palmitate to internal cysteine residues is catalyzed by 23 Asp-His-His-Cys (DHHC)-family palmitoyl S-acyltransferases while the removal of palmitate is catalyzed by serine hydrolases, including acyl-protein thioesterases (APTs). These enzymes modulate the function of important oncogenes and tumor suppressors and often display altered expression patterns in cancer. Targeting S-palmitoylation or the enzymes responsible for palmitoylation dynamics may therefore represent a candidate therapeutic strategy for certain cancers.


Subject(s)
Lipoylation/genetics , Neoplasm Proteins/metabolism , Neoplasms/genetics , Protein Processing, Post-Translational/genetics , Acyltransferases/genetics , Humans , Neoplasm Proteins/genetics , Neoplasms/metabolism , Proteolysis , Substrate Specificity
14.
J Mol Cell Cardiol ; 135: 1-9, 2019 10.
Article in English | MEDLINE | ID: mdl-31362018

ABSTRACT

BACKGROUND: K channel interacting protein 2 (KChIP2), initially cloned as Kv4 channel modulator, is a multi-tasking protein. In addition to modulating several cardiac ion channels at the plasma membrane, it can also modulate microRNA transcription inside nuclei, and interact with presenilins to modulate Ca release through RyR2 in the cytoplasm. However, the mechanism regulating its subcellular distribution is not clear. OBJECTIVE: We tested whether palmitoylation drives KChIP2 trafficking and distribution in cells, and whether the distribution pattern of KChIP2 in cardiac myocytes is sensitive to cellular milieu. METHOD: We conducted imaging and biochemical experiments on palmitoylatable and unpalmitoylatable KChIP2 variants expressed in COS-7 cells and in cardiomyocytes, and on native KChIP2 in myocytes. RESULTS: In COS-7 cells, palmitoylatable KChIP2 clustered to plasma membrane, while unpalmitoylatable KChIP2 exhibited higher cytoplasmic mobility and faster nuclear entry. The same differences in distribution and mobility were observed when these KChIP2 variants were expressed in cardiac myocytes, indicating that the palmitoylation-dependent distribution and trafficking are intrinsic properties of KChIP2. Importantly, acute stress in a rat model of cardiac arrest/resuscitation induced changes in native KChIP2 resembling those of KChIP2 depalmitoylation, promoting KChIP2 nuclear entry. CONCLUSION: The palmitoylation status of KChIP2 determines its subcellular distribution in cardiac myocytes. Stress promotes nuclear entry of KChIP2, diverting it from ion channel modulation at the plasma membrane to other functions in the nuclear compartment.


Subject(s)
Heart Arrest/genetics , Kv Channel-Interacting Proteins/genetics , Lipoylation/genetics , Potassium/metabolism , Animals , COS Cells , Cell Membrane/genetics , Chlorocebus aethiops , Cytoplasm/genetics , Cytoplasm/metabolism , Heart Arrest/metabolism , Heart Arrest/pathology , Heart Ventricles/metabolism , Heart Ventricles/pathology , Humans , MicroRNAs/genetics , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/pathology , Palmitates/pharmacology , Rats , Ryanodine Receptor Calcium Release Channel/genetics
15.
J Cell Sci ; 130(13): 2159-2171, 2017 Jul 01.
Article in English | MEDLINE | ID: mdl-28515233

ABSTRACT

Wntless (Wls) transports Wnt molecules for secretion; however, the cellular mechanism underlying the initial assembly of Wnt secretory vesicles is still not fully defined. Here, we performed proteomic and mutagenic analyses of mammalian Wls, and report a mechanism for formation of early Wnt secretory vesicles on ER membrane. Wls forms a complex with SEC12 (also known as PREB), an ER membrane-localized guanine nucleotide-exchange factor (GEF) activator of the SAR1 (the SAR1A isoform) small GTPase. Compared to palmitoylation-deficient Wnt molecules, binding of mature Wnt to Wls increases Wls-SEC12 interaction and promotes association of Wls with SAR1, the key activator of the COPII machinery. Incorporation of Wls into this exporting ER compartment is affected by Wnt ligand binding and SEC12 binding to Wls, as well as the structural integrity and, potentially, the folding of the cytosolic tail of Wls. In contrast, Wls-SEC12 binding is stable, with the interacting interface biochemically mapped to cytosolic segments of individual proteins. Mutant Wls that fails to communicate with the COPII machinery cannot effectively support Wnt secretion. These data suggest that formation of early Wnt secretory vesicles is carefully regulated to ensure proper export of functional ligands.


Subject(s)
DNA-Binding Proteins/genetics , Endoplasmic Reticulum/genetics , Guanine Nucleotide Exchange Factors/genetics , Intracellular Signaling Peptides and Proteins/genetics , Receptors, G-Protein-Coupled/genetics , Secretory Vesicles/genetics , Transcription Factors/genetics , DNA-Binding Proteins/metabolism , Endoplasmic Reticulum/metabolism , Golgi Apparatus/genetics , Golgi Apparatus/metabolism , Guanine Nucleotide Exchange Factors/metabolism , HeLa Cells , Humans , Intracellular Signaling Peptides and Proteins/metabolism , Ligands , Lipoylation/genetics , Monomeric GTP-Binding Proteins/genetics , Monomeric GTP-Binding Proteins/metabolism , Multiprotein Complexes/genetics , Proteomics , Receptors, G-Protein-Coupled/metabolism , Secretory Vesicles/metabolism , Transcription Factors/metabolism , Wnt Signaling Pathway/genetics
16.
Mol Microbiol ; 106(3): 439-451, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28836704

ABSTRACT

Lipoate is an essential cofactor for enzymes that are important for central metabolism and other processes. In malaria parasites, scavenged lipoate from the human host is required for survival. The Plasmodium falciparum mitochondrion contains two enzymes (PfLipL1 and PfLipL2) that are responsible for activating mitochondrial proteins through the covalent attachment of lipoate (lipoylation). Lipoylation occurs via a novel redox-gated mechanism that remains poorly understood. We show that PfLipL1 functions as a redox switch that determines which downstream proteins will be activated. Based on the lipoate redox state, PfLipL1 either functions as a canonical lipoate ligase or as a lipoate activating enzyme which works in conjunction with PfLipL2. We demonstrate that PfLipL2 is a lipoyltransferase and is a member of a novel clade of lipoate attachment enzymes. We show that a LipL2 enzyme from Chlamydia trachomatis has similar activity, demonstrating conservation between intracellular pathogens from different phylogenetic kingdoms and supporting the hypothesis that an early ancestor of malaria parasites once contained a chlamydial endosymbiont. Redox-dependent lipoylation may regulate processes such as central metabolism and oxidative defense pathways.


Subject(s)
Lipoylation/genetics , Lipoylation/physiology , Chlamydia/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/metabolism , Nucleotidyltransferases , Oxidation-Reduction , Peptide Synthases/genetics , Plasmodium/metabolism , Plasmodium falciparum/genetics , Protozoan Proteins/metabolism , Sequence Alignment
17.
Cereb Cortex ; 27(7): 3618-3629, 2017 07 01.
Article in English | MEDLINE | ID: mdl-27365300

ABSTRACT

22q11.2 deletion syndrome (22q11DS) is associated with learning and cognitive dysfunctions and a high risk of developing schizophrenia. It has become increasingly clear that dendritic spine plasticity is tightly linked to cognition. Thus, understanding how genes involved in cognitive disorders affect synaptic networks is a major challenge of modern biology. Several studies have pointed to a spine density deficit in 22q11DS transgenic mice models. Using the LgDel mouse model, we first quantified spine deficit at different stages using electron microscopy. Next we performed repetitive confocal imaging over several days on hippocampal organotypic cultures of LgDel mice. We show no imbalanced ratio between daily spine formation and spine elimination, but a decreased spine life expectancy. We corrected this impaired spine stabilization process by overexpressing ZDHHC8 palmitoyltransferase, whose gene belongs to the LgDel microdeletion. Overexpression of one of its substrates, the cdc42 brain-specific variant, under a constitutively active form (cdc42-palm-CA) led to the same result. Finally, we could rescue spine density in vivo, in adult LgDel mice, by injecting pups with a vector expressing cdc42-palm-CA. This study reveals a new role of ZDHHC8-cdc42-palm molecular pathway in postsynaptic structural plasticity and provides new evidence in favor of the dysconnectivity hypothesis for schizophrenia.


Subject(s)
Dendritic Spines/metabolism , DiGeorge Syndrome/pathology , DiGeorge Syndrome/therapy , Hippocampus/cytology , cdc42 GTP-Binding Protein/metabolism , Acyltransferases/genetics , Acyltransferases/metabolism , Acyltransferases/therapeutic use , Age Factors , Animals , Animals, Newborn , Dendritic Spines/ultrastructure , DiGeorge Syndrome/genetics , Disease Models, Animal , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , In Vitro Techniques , Lipoylation/drug effects , Lipoylation/genetics , Membrane Proteins/genetics , Membrane Proteins/metabolism , Membrane Proteins/therapeutic use , Mice , Microscopy, Confocal , Microscopy, Electron , Models, Anatomic , Mutation/genetics , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Organ Culture Techniques , Phosphoproteins/genetics , Phosphoproteins/metabolism , Phosphoric Monoester Hydrolases/genetics , Phosphoric Monoester Hydrolases/metabolism , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Transduction, Genetic , cdc42 GTP-Binding Protein/genetics
18.
Mem Inst Oswaldo Cruz ; 113(8): e180086, 2018.
Article in English | MEDLINE | ID: mdl-29846394

ABSTRACT

Dynamic S-palmitoylation of proteins is the addition of palmitic acid by zDHHC palmitoyl transferases (PATs) and depalmitoylation by palmitoyl protein thioesterases (PPTs). A putative PAT (TcPAT1) has been previously identified in Trypanosoma cruzi, the etiological agent of Chagas disease. Here we analyse other 14 putative TcPATs and 2 PPTs in the parasite genome. T. cruzi cell lines expressing TcPATs and TcPPTs plus a FLAG tag at the C terminus were produced for most enzymes, with positive detection by indirect immunofluorescence. Overexpressed TcPATs were mostly found as single spots at the parasite anterior end, while the TcPPTs were dispersed throughout the parasite body.


Subject(s)
Lipoylation/genetics , Palmitates/metabolism , Protein S/metabolism , Protozoan Proteins/metabolism , Trypanosoma cruzi/metabolism , Gene Expression Regulation , Protein S/genetics , Protozoan Proteins/genetics , Trypanosoma cruzi/enzymology , Trypanosoma cruzi/genetics
19.
J Neurosci ; 36(29): 7562-8, 2016 07 20.
Article in English | MEDLINE | ID: mdl-27445135

ABSTRACT

UNLABELLED: Synapses are specialized contacts between neurons. Synapse differentiation-induced gene I (SynDIG1) plays a critical role during synapse development to regulate AMPA receptor (AMPAR) and PSD-95 content at excitatory synapses. Palmitoylation regulates the localization and function of many synaptic proteins, including AMPARs and PSD-95. Here we show that SynDIG1 is palmitoylated, and investigate the effects of palmitoylation on SynDIG1 stability and localization. Structural modeling of SynDIG1 suggests that the membrane-associated region forms a three-helical bundle with two cysteine residues located at positions 191 and 192 in the juxta-transmembrane region exposed to the cytoplasm. Site-directed mutagenesis reveals that C191 and C192 are palmitoylated in heterologous cells and positively regulates dendritic targeting in neurons. Like PSD-95, activity blockade in a rat hippocampal slice culture increases SynDIG1 palmitoylation, which is consistent with our prior demonstration that SynDIG1 localization at synapses increases upon activity blockade. These data demonstrate that palmitoylation of SynDIG1 is regulated by neuronal activity, and plays a critical role in regulating its stability and subcellular localization, and thereby its function. SIGNIFICANCE STATEMENT: Palmitoylation is a reversible post-translation modification that has recently been recognized as playing a critical role in the localization and function of many synaptic proteins. Here we show that activity-dependent palmitoylation of the atypical AMPA receptor auxiliary transmembrane protein SynDIG1 regulates its stability and localization at synapses to regulate function and synaptic strength.


Subject(s)
Lipoylation/physiology , Membrane Proteins/metabolism , Nerve Tissue Proteins/metabolism , Neurons/metabolism , Synapses/metabolism , Animals , Cells, Cultured , Chlorocebus aethiops , Female , Gene Expression Regulation/drug effects , Gene Expression Regulation/genetics , Hippocampus/cytology , In Vitro Techniques , Lipoylation/drug effects , Lipoylation/genetics , Membrane Proteins/genetics , Mice , Mice, Inbred C57BL , Models, Molecular , Nerve Tissue Proteins/genetics , Neurons/drug effects , Organ Culture Techniques , Pregnancy , Protein Transport/genetics , Protein Transport/physiology , Rats , Rats, Sprague-Dawley , Synapses/drug effects , Tetrodotoxin/pharmacology
20.
Biochem Biophys Res Commun ; 493(1): 213-219, 2017 11 04.
Article in English | MEDLINE | ID: mdl-28899783

ABSTRACT

Currently, there are no effective therapeutic strategies targeting Kras driven cancers, and therefore, identifying new targeted therapies and overcoming drug resistance have become paramount for effective long-term cancer therapy. We have found that reducing expression of the palmitoyl transferase DHHC20 increases cell death induced by the EGFR inhibitor gefitinib in Kras and EGFR mutant cell lines, but not MCF7 cells harboring wildtype Kras. We show that the increased gefitinib sensitivity in cancer cells induced by DHHC20 inhibition is mediated directly through loss of palmitoylation on a previously identified cysteine residue in the C-terminal tail of EGFR. We utilized an EGFR point mutant in which the palmitoylated cysteine 1025 is mutated to alanine (EGFRC1025A), that results in receptor activation. Expression of the EGFR mutant alone in NIH3T3 cells does not increase sensitivity to gefitinib-induced cell death. However, when EGFRC1025A is expressed in cells expressing activated KrasG12V, EGFR inhibitor induced cell death is increased. Surprisingly, lung cancer cells harboring the EGFR inhibitor resistant mutation, T790M, become sensitive to EGFR inhibitor treatment when DHHC20 is inhibited. Finally, the small molecule, 2-bromopalmitate, which has been shown to inhibit palmitoyl transferases, acts synergistically with gefitinib to induce cell death in the gefitinib resistant cell line NCI-H1975.


Subject(s)
Cysteine/genetics , ErbB Receptors/antagonists & inhibitors , ErbB Receptors/genetics , Neoplasms, Experimental/physiopathology , Proto-Oncogene Proteins p21(ras)/metabolism , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Apoptosis/drug effects , Cocarcinogenesis , Cysteine/metabolism , Dose-Response Relationship, Drug , Drug Resistance, Neoplasm , ErbB Receptors/metabolism , Gefitinib , Humans , Lipoylation/drug effects , Lipoylation/genetics , MCF-7 Cells , Membrane Proteins , Mutation , Neoplasms, Experimental/drug therapy , Neoplasms, Experimental/metabolism , Proto-Oncogene Proteins p21(ras)/genetics , Quinazolines/administration & dosage , Quinazolines/pharmacology
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