Comparison of low cost 3D structured light scanners for face modeling.

This study aims to compare three different structured light scanner systems to generate accurate 3D human face models. Among these systems, the most dense and expensive one was denoted as the reference and the other two that were low cost and low resolution were compared according to the reference system. One female face and one male face were scanned with three light scanner systems. Point-cloud filtering, mesh generation, and hole-filling steps were carried out using a trial version of commercial software; moreover, the data evaluation process was realized using CloudCompare open-source software. Various filtering and mesh smoothing levels were applied on reference data to compare with other low-cost systems. Thus, the optimum reduction level of reference data was evaluated to continue further processes. The outcome of the presented study shows that low-cost structured light scanners have a great potential for 3D object modeling, including the human face. A considerable cheap structured light system has been used due to its capacity to obtain spatial and morphological information in the case study of 3D human face modeling. This study also discusses the benefits and accuracy of low-cost structured light systems.

A dense residual U-net for multiple sclerosis lesions segmentation from multi-sequence 3D MR images.

Multiple Sclerosis (MS) is an autoimmune disease that causes brain and spinal cord lesions, which magnetic resonance imaging (MRI) can detect and characterize. Recently, deep learning methods have achieved remarkable results in the automated segmentation of MS lesions from MRI data. Hence, this study proposes a novel dense residual U-Net model that combines attention gate (AG), efficient channel attention (ECA), and Atrous Spatial Pyramid Pooling (ASPP) to enhance the performance of the automatic MS lesion segmentation using 3D MRI sequences. First, convolution layers in each block of the U-Net architecture are replaced by residual blocks and connected densely. Then, AGs are exploited to capture salient features passed through the skip connections. The ECA module is appended at the end of each residual block and each downsampling block of U-Net. Later, the bottleneck of U-Net is replaced with the ASSP module to extract multi-scale contextual information. Furthermore, 3D MR images of Fluid Attenuated Inversion Recovery (FLAIR), T1-weighted (T1-w), and T2-weighted (T2-w) are exploited jointly to perform better MS lesion segmentation. The proposed model is validated on the publicly available ISBI2015 and MSSEG2016 challenge datasets. This model produced an ISBI score of 92.75, a mean Dice score of 66.88%, a mean positive predictive value (PPV) of 86.50%, and a mean lesion-wise true positive rate (LTPR) of 60.64% on the ISBI2015 testing set. Also, it achieved a mean Dice score of 67.27%, a mean PPV of 65.19%, and a mean sensitivity of 74.40% on the MSSEG2016 testing set. The results show that the proposed model performs better than the results of some experts and some of the other state-of-the-art methods realized related to this particular subject. Specifically, the best Dice score and the best LTPR are obtained on the ISBI2015 testing set by using the proposed model to segment MS lesions.

Deep neural network approaches for detecting gastric polyps in endoscopic images.

Gastrointestinal endoscopy is the primary method used for the diagnosis and treatment of gastric polyps. The early detection and removal of polyps is vitally important in preventing cancer development. Many studies indicate that a high workload can contribute to misdiagnosing gastric polyps, even for experienced physicians. In this study, we aimed to establish a deep learning-based computer-aided diagnosis system for automatic gastric polyp detection. A private gastric polyp dataset was generated for this purpose consisting of 2195 endoscopic images and 3031 polyp labels. Retrospective gastrointestinal endoscopy data from the Karadeniz Technical University, Farabi Hospital, were used in the study. YOLOv4, CenterNet, EfficientNet, Cross Stage ResNext50-SPP, YOLOv3, YOLOv3-SPP, Single Shot Detection, and Faster Regional CNN deep learning models were implemented and assessed to determine the most efficient model for precancerous gastric polyp detection. The dataset was split 70% and 30% for training and testing all the implemented models. YOLOv4 was determined to be the most accurate model, with an 87.95% mean average precision. We also evaluated all the deep learning models using a public gastric polyp dataset as the test data. The results show that YOLOv4 has significant potential applicability in detecting gastric polyps and can be used effectively in gastrointestinal CAD systems. Gastric Polyp Detection Process using Deep Learning with Private Dataset.

Land cover classification with an expert system approach using Landsat ETM imagery: a case study of Trabzon.

The main objective of this study is to generate a knowledge base which is composed of user-defined variables and included raster imagery, vector coverage, spatial models, external programs, and simple scalars and to develop an expert classification using Landsat 7 (ETM+) imagery for land cover classification in a part of Trabzon city. Expert systems allow for the integration of remote-sensed data with other sources of geo-referenced information such as land use data, spatial texture, and digital elevation model to obtain greater classification accuracy. Logical decision rules are used with the various datasets to assign class values for each pixel. Expert system is very suitable for the work of image interpretation as a powerful means of information integration. Landsat ETM data acquired in the year 2000 were initially classified into seven classes for land cover using a maximum likelihood decision rule. An expert system was constructed to perform post-classification sorting of the initial land cover classification using additional spatial datasets such as land use data. The overall accuracy of expert classification was 95.80%. Individual class accuracy ranged from 75% to 100% for each class.

UAV-based evaluation of morphological changes induced by extreme rainfall events in meandering rivers.

Morphological changes, caused by the erosion and deposition processes due to water discharge and sediment flux occur, in the banks along the river channels and in the estuaries. Flow rate is one of the most important factors that can change river morphology. The geometric shapes of the meanders and the river flow parameters are crucial components in the areas where erosion or deposition occurs in the meandering rivers. Extreme precipitation triggers erosion on the slopes, which causes significant morphological changes in large areas during and after the event. The flow and sediment amount observed in a river basin with extreme precipitation increases and exceeds the long-term average value. Hereby, erosion severity can be determined by performing spatial analyses on remotely sensed imagery acquired before and after an extreme precipitation event. Changes of erosion and deposition along the river channels and overspill channels can be examined by comparing multi-temporal Unmanned Aerial Vehicle (UAV) based Digital Surface Model (DSM) data. In this study, morphological changes in the Büyük Menderes River located in the western Turkey, were monitored with pre-flood (June 2018), during flood (January 2019), and post-flood (September 2019) UAV surveys, and the spatial and volumetric changes of eroded/deposited sediment were quantified. For this purpose, the DSAS (Digital Shoreline Analysis System) method and the DEM of Difference (DoD) method were used to determine the changes on the riverbank and to compare the periodic volumetric morphological changes. Hereby, Structure from Motion (SfM) photogrammetry technique was exploited to a low-cost UAV derived imagery to achieve riverbank, areal and volumetric changes following the extreme rainfall events extracted from the time series of Tropical Rainfall Measuring Mission (TRMM) satellite data. The change analyses were performed to figure out the periodic morphodynamic variations and the impact of the flood on the selected meandering structures. In conclusion, although the river water level increased by 0.4-5.9 meters with the flood occurred in January 2019, the sediment deposition areas reformed after the flood event, as the water level decreased. Two-year monitoring revealed that the sinuosity index (SI) values changed during the flood approached the pre-flood values over time. Moreover, it was observed that the amount of the deposited sediments in September 2019 approached that of June 2018.

Multidirectional Scanning Model, MUSCLE, to Vectorize Raster Images with Straight Lines.

This paper presents a new model, MUSCLE (Multidirectional Scanning for Line Extraction), for automatic vectorization of raster images with straight lines. The algorithm of the model implements the line thinning and the simple neighborhood methods to perform vectorization. The model allows users to define specified criteria which are crucial for acquiring the vectorization process. In this model, various raster images can be vectorized such as township plans, maps, architectural drawings, and machine plans. The algorithm of the model was developed by implementing an appropriate computer programming and tested on a basic application. Results, verified by using two well known vectorization programs (WinTopo and Scan2CAD), indicated that the model can successfully vectorize the specified raster data quickly and accurately.

Histomorphological comparison of immobilization and denervation atrophies.

OBJECTIVE: The aim of this study was to compare the histomorphological changes in the muscle tissue after immobilization and denervation atrophies in an animal model. METHODS: The study included 30 Ross-800 hybrid chickens (60 legs) divided into two study (immobilization and denervation) and two control groups. The knee and ankle joints were fixed with a Kirschner wire in the immobilization atrophy group and sciatic nerve resection was performed in the denervation group. The unaffected side of each group was used as controls. The weight, volume, height, diameter and the rate of elongation of the Achilles tendons, and the amount of fat deposition, degeneration and fibrosis were compared between the two groups at the end of 3 weeks. Hematoxylin-eosin staining was performed for a histopathological assessment of the muscles. The Mann-Whitney U-test was used for comparisons. RESULTS: Loss of the volume, weight and muscle length was significantly lower in the denervation group than the immobilization group (p<0.05). Differences between the diameter of the Achilles tendon and length and diameter of the short heads were not statistically significant. There were statistically significant differences in fat deposition, degeneration and fibrosis between the degeneration group and the immobilization group (p<0.05). Pixel counting revealed a significant difference in the number of pixels in the fatty tissue area (white area) between the denervation group and the immobilization group (p<0.05). CONCLUSION: Our results showed that histomorphological changes were more in the denervation group than the immobilization group in an experimental chicken model.