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1.

Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients.

Bost, Pierre; Giladi, Amir; Liu, Yang; Bendjelal, Yanis; Xu, Gang; David, Eyal; Blecher-Gonen, Ronnie; Cohen, Merav; Medaglia, Chiara; Li, Hanjie; Deczkowska, Aleksandra; Zhang, Shuye; Schwikowski, Benno; Zhang, Zheng; Amit, Ido.

Cell ; 181(7): 1475-1488.e12, 2020 06 25.

Artículo en Inglés | MEDLINE | ID: mdl-32479746

2.

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

Lavin, Yonit; Winter, Deborah; Blecher-Gonen, Ronnie; David, Eyal; Keren-Shaul, Hadas; Merad, Miriam; Jung, Steffen; Amit, Ido.

Cell ; 159(6): 1312-26, 2014 Dec 04.

Artículo en Inglés | MEDLINE | ID: mdl-25480296

3.

Sumoylation coordinates the repression of inflammatory and anti-viral gene-expression programs during innate sensing.

Decque, Adrien; Joffre, Olivier; Magalhaes, Joao G; Cossec, Jack-Christophe; Blecher-Gonen, Ronnie; Lapaquette, Pierre; Silvin, Aymeric; Manel, Nicolas; Joubert, Pierre-Emmanuel; Seeler, Jacob-Sebastian; Albert, Matthew L; Amit, Ido; Amigorena, Sebastian; Dejean, Anne.

Nat Immunol ; 17(2): 140-9, 2016 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-26657003

4.

Distinct Murine Mucosal Langerhans Cell Subsets Develop from Pre-dendritic Cells and Monocytes.

Capucha, Tal; Mizraji, Gabriel; Segev, Hadas; Blecher-Gonen, Ronnie; Winter, Deborah; Khalaileh, Abed; Tabib, Yaara; Attal, Tsipora; Nassar, Maria; Zelentsova, Katya; Kisos, Hen; Zenke, Martin; Seré, Kristin; Hieronymus, Thomas; Burstyn-Cohen, Tal; Amit, Ido; Wilensky, Asaf; Hovav, Avi-Hai.

Immunity ; 43(2): 369-81, 2015 Aug 18.

Artículo en Inglés | MEDLINE | ID: mdl-26231115

5.

M(odu)LLating the innate response.

Blecher-Gonen, Ronnie; Amit, Ido.

Immunity ; 36(4): 551-2, 2012 Apr 20.

Artículo en Inglés | MEDLINE | ID: mdl-22520848

6.

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.

Garber, Manuel; Yosef, Nir; Goren, Alon; Raychowdhury, Raktima; Thielke, Anne; Guttman, Mitchell; Robinson, James; Minie, Brian; Chevrier, Nicolas; Itzhaki, Zohar; Blecher-Gonen, Ronnie; Bornstein, Chamutal; Amann-Zalcenstein, Daniela; Weiner, Assaf; Friedrich, Dennis; Meldrim, James; Ram, Oren; Cheng, Christine; Gnirke, Andreas; Fisher, Sheila; Friedman, Nir; Wong, Bang; Bernstein, Bradley E; Nusbaum, Chad; Hacohen, Nir; Regev, Aviv; Amit, Ido.

Mol Cell ; 47(5): 810-22, 2012 Sep 14.

Artículo en Inglés | MEDLINE | ID: mdl-22940246

7.

CD74 is a novel transcription regulator.

Gil-Yarom, Naama; Radomir, Lihi; Sever, Lital; Kramer, Matthias P; Lewinsky, Hadas; Bornstein, Chamutal; Blecher-Gonen, Ronnie; Barnett-Itzhaki, Zohar; Mirkin, Vita; Friedlander, Gilgi; Shvidel, Lev; Herishanu, Yair; Lolis, Elias J; Becker-Herman, Shirly; Amit, Ido; Shachar, Idit.

Proc Natl Acad Sci U S A ; 114(3): 562-567, 2017 01 17.

Artículo en Inglés | MEDLINE | ID: mdl-28031488

8.

The bone marrow is patrolled by NK cells that are primed and expand in response to systemic viral activation.

Milo, Idan; Blecher-Gonen, Ronnie; Barnett-Itzhaki, Zohar; Bar-Ziv, Raz; Tal, Orna; Gurevich, Irina; Feferman, Tali; Drexler, Ingo; Amit, Ido; Bousso, Philippe; Shakhar, Guy.

Eur J Immunol ; 48(7): 1137-1152, 2018 07.

Artículo en Inglés | MEDLINE | ID: mdl-29624673

9.

Deterministic direct reprogramming of somatic cells to pluripotency.

Rais, Yoach; Zviran, Asaf; Geula, Shay; Gafni, Ohad; Chomsky, Elad; Viukov, Sergey; Mansour, Abed AlFatah; Caspi, Inbal; Krupalnik, Vladislav; Zerbib, Mirie; Maza, Itay; Mor, Nofar; Baran, Dror; Weinberger, Leehee; Jaitin, Diego A; Lara-Astiaso, David; Blecher-Gonen, Ronnie; Shipony, Zohar; Mukamel, Zohar; Hagai, Tzachi; Gilad, Shlomit; Amann-Zalcenstein, Daniela; Tanay, Amos; Amit, Ido; Novershtern, Noa; Hanna, Jacob H.

Nature ; 502(7469): 65-70, 2013 Oct 03.

Artículo en Inglés | MEDLINE | ID: mdl-24048479

10.

Chronic exposure to TGFß1 regulates myeloid cell inflammatory response in an IRF7-dependent manner.

Cohen, Merav; Matcovitch, Orit; David, Eyal; Barnett-Itzhaki, Zohar; Keren-Shaul, Hadas; Blecher-Gonen, Ronnie; Jaitin, Diego Adhemar; Sica, Antonio; Amit, Ido; Schwartz, Michal.

EMBO J ; 33(24): 2906-21, 2014 Dec 17.

Artículo en Inglés | MEDLINE | ID: mdl-25385836

11.

Corrigendum: Deterministic direct reprogramming of somatic cells to pluripotency.

Rais, Yoach; Zviran, Asaf; Geula, Shay; Gafni, Ohad; Chomsky, Elad; Viukov, Sergey; Mansour, Abed AlFatah; Caspi, Inbal; Krupalnik, Vladislav; Zerbib, Mirie; Maza, Itay; Mor, Nofar; Baran, Dror; Weinberger, Leehee; Jaitin, Diego A; Lara-Astiaso, David; Blecher-Gonen, Ronnie; Shipony, Zohar; Mukamel, Zohar; Hagai, Tzachi; Gilad, Shlomit; Amann-Zalcenstein, Daniela; Tanay, Amos; Amit, Ido; Novershtern, Noa; Hanna, Jacob H.

Nature ; 520(7549): 710, 2015 Apr 30.

Artículo en Inglés | MEDLINE | ID: mdl-25830885

12.

Optimized single-nucleus transcriptional profiling by combinatorial indexing.

Martin, Beth K; Qiu, Chengxiang; Nichols, Eva; Phung, Melissa; Green-Gladden, Rula; Srivatsan, Sanjay; Blecher-Gonen, Ronnie; Beliveau, Brian J; Trapnell, Cole; Cao, Junyue; Shendure, Jay.

Nat Protoc ; 18(1): 188-207, 2023 01.

Artículo en Inglés | MEDLINE | ID: mdl-36261634

13.

The continuum of Drosophila embryonic development at single-cell resolution.

Calderon, Diego; Blecher-Gonen, Ronnie; Huang, Xingfan; Secchia, Stefano; Kentro, James; Daza, Riza M; Martin, Beth; Dulja, Alessandro; Schaub, Christoph; Trapnell, Cole; Larschan, Erica; O'Connor-Giles, Kate M; Furlong, Eileen E M; Shendure, Jay.

Science ; 377(6606): eabn5800, 2022 08 05.

Artículo en Inglés | MEDLINE | ID: mdl-35926038

14.

Bi-fated tendon-to-bone attachment cells are regulated by shared enhancers and KLF transcription factors.

Kult, Shiri; Olender, Tsviya; Osterwalder, Marco; Markman, Svetalana; Leshkowitz, Dena; Krief, Sharon; Blecher-Gonen, Ronnie; Ben-Moshe, Shani; Farack, Lydia; Keren-Shaul, Hadas; Salame, Tomer-Meir; Capellini, Terence D; Itzkovitz, Shalev; Amit, Ido; Visel, Axel; Zelzer, Elazar.

Elife ; 102021 01 15.

Artículo en Inglés | MEDLINE | ID: mdl-33448926

15.

Dissecting cellular crosstalk by sequencing physically interacting cells.

Giladi, Amir; Cohen, Merav; Medaglia, Chiara; Baran, Yael; Li, Baoguo; Zada, Mor; Bost, Pierre; Blecher-Gonen, Ronnie; Salame, Tomer-Meir; Mayer, Johannes U; David, Eyal; Ronchese, Franca; Tanay, Amos; Amit, Ido.

Nat Biotechnol ; 38(5): 629-637, 2020 05.

Artículo en Inglés | MEDLINE | ID: mdl-32152598

16.

A human cell atlas of fetal gene expression.

Cao, Junyue; O'Day, Diana R; Pliner, Hannah A; Kingsley, Paul D; Deng, Mei; Daza, Riza M; Zager, Michael A; Aldinger, Kimberly A; Blecher-Gonen, Ronnie; Zhang, Fan; Spielmann, Malte; Palis, James; Doherty, Dan; Steemers, Frank J; Glass, Ian A; Trapnell, Cole; Shendure, Jay.

Science ; 370(6518)2020 11 13.

Artículo en Inglés | MEDLINE | ID: mdl-33184181

17.

Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity.

Blecher-Gonen, Ronnie; Bost, Pierre; Hilligan, Kerry L; David, Eyal; Salame, Tomer Meir; Roussel, Elsa; Connor, Lisa M; Mayer, Johannes U; Bahar Halpern, Keren; Tóth, Beáta; Itzkovitz, Shalev; Schwikowski, Benno; Ronchese, Franca; Amit, Ido.

Cell Syst ; 8(2): 109-121.e6, 2019 02 27.

Artículo en Inglés | MEDLINE | ID: mdl-30772378

18.

M-sec regulates polarized secretion of inflammatory endothelial chemokines and facilitates CCL2-mediated lymphocyte transendothelial migration.

Barzilai, Sagi; Blecher-Gonen, Ronnie; Barnett-Itzhaki, Zohar; Zauberman, Ayelet; Lebel-Haziv, Yaeli; Amit, Ido; Alon, Ronen.

J Leukoc Biol ; 99(6): 1045-55, 2016 06.

Artículo en Inglés | MEDLINE | ID: mdl-26701136

19.

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states.

Blecher-Gonen, Ronnie; Barnett-Itzhaki, Zohar; Jaitin, Diego; Amann-Zalcenstein, Daniela; Lara-Astiaso, David; Amit, Ido.

Nat Protoc ; 8(3): 539-54, 2013 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-23429716

20.

Release of serine/threonine-phosphorylated adaptors from signaling microclusters down-regulates T cell activation.

Lasserre, Rémi; Cuche, Céline; Blecher-Gonen, Ronnie; Libman, Evgeny; Biquand, Elise; Danckaert, Anne; Yablonski, Deborah; Alcover, Andrés; Di Bartolo, Vincenzo.

J Cell Biol ; 195(5): 839-53, 2011 Nov 28.

Artículo en Inglés | MEDLINE | ID: mdl-22105350

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