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1.
Appl Environ Microbiol ; 83(20)2017 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-28778886

RESUMEN

We describe here the identification and characterization of a copper radical oxidase from auxiliary activities family 5 (AA5_2) that was distinguished by showing preferential activity toward raffinose. Despite the biotechnological potential of carbohydrate oxidases from family AA5, very few members have been characterized. The gene encoding raffinose oxidase from Colletotrichum graminicola (CgRaOx; EC 1.1.3.-) was identified utilizing a bioinformatics approach based on the known modular structure of a characterized AA5_2 galactose oxidase. CgRaOx was expressed in Pichia pastoris, and the purified enzyme displayed the highest activity on the trisaccharide raffinose, whereas the activity on the disaccharide melibiose was three times lower and more than ten times lower activity was detected on d-galactose at a 300 mM substrate concentration. Thus, the substrate preference of CgRaOx was distinguished clearly from the substrate preferences of the known galactose oxidases. The site of oxidation for raffinose was studied by 1H nuclear magnetic resonance and mass spectrometry, and we confirmed that the hydroxyl group at the C-6 position was oxidized to an aldehyde and that in addition uronic acid was produced as a side product. A new electrospray ionization mass spectrometry method for the identification of C-6 oxidized products was developed, and the formation mechanism of the uronic acid was studied. CgRaOx presented a novel activity pattern in the AA5 family.IMPORTANCE Currently, there are only a few characterized members of the CAZy AA5 protein family. These enzymes are interesting from an application point of view because of their ability to utilize the cheap and abundant oxidant O2 without the requirement of complex cofactors such as FAD or NAD(P). Here, we present the identification and characterization of a novel AA5 member from Colletotrichum graminicola As discussed in the present study, the bioinformatics approach using the modular structure of galactose oxidase was successful in finding a C-6 hydroxyl carbohydrate oxidase having substrate preference for the trisaccharide raffinose. By the discovery of this activity, the diversity of the CAZy AA5 family is increasing.


Asunto(s)
Proteínas Bacterianas/metabolismo , Colletotrichum/enzimología , Oxidorreductasas/metabolismo , Rafinosa/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Colletotrichum/química , Colletotrichum/genética , Colletotrichum/metabolismo , Galactosa/química , Galactosa/metabolismo , Cinética , Familia de Multigenes , Oxidación-Reducción , Oxidorreductasas/química , Oxidorreductasas/genética , Rafinosa/química , Ácidos Urónicos/metabolismo
2.
Glycoconj J ; 33(2): 189-99, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26983412

RESUMEN

N-glycosylation is an important feature of therapeutic and other industrially relevant proteins, and engineering of the N-glycosylation pathway provides opportunities for developing alternative, non-mammalian glycoprotein expression systems. Among yeasts, Saccharomyces cerevisiae is the most established host organism used in therapeutic protein production and therefore an interesting host for glycoengineering. In this work, we present further improvements in the humanization of the N-glycans in a recently developed S. cerevisiae strain. In this strain, a tailored trimannosyl lipid-linked oligosaccharide is formed and transferred to the protein, followed by complex-type glycan formation by Golgi apparatus-targeted human N-acetylglucosamine transferases. We improved the glycan pattern of the glycoengineered strain both in terms of glycoform homogeneity and the efficiency of complex-type glycosylation. Most of the interfering structures present in the glycoengineered strain were eliminated by deletion of the MNN1 gene. The relative abundance of the complex-type target glycan was increased by the expression of a UDP-N-acetylglucosamine transporter from Kluyveromyces lactis, indicating that the import of UDP-N-acetylglucosamine into the Golgi apparatus is a limiting factor for efficient complex-type N-glycosylation in S. cerevisiae. By a combination of the MNN1 deletion and the expression of a UDP-N-acetylglucosamine transporter, a strain forming complex-type glycans with a significantly improved homogeneity was obtained. Our results represent a further step towards obtaining humanized glycoproteins with a high homogeneity in S. cerevisiae.


Asunto(s)
Polisacáridos Fúngicos/biosíntesis , Oligosacáridos/biosíntesis , Saccharomyces cerevisiae/metabolismo , Conformación de Carbohidratos , Polisacáridos Fúngicos/química , Polisacáridos Fúngicos/genética , Eliminación de Gen , Glicosilación , Humanos , Kluyveromyces/genética , Kluyveromyces/metabolismo , Manosiltransferasas/genética , Manosiltransferasas/metabolismo , Glicoproteínas de Membrana/genética , Glicoproteínas de Membrana/metabolismo , Oligosacáridos/química , Oligosacáridos/genética , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo
3.
Appl Microbiol Biotechnol ; 100(2): 673-85, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26428243

RESUMEN

We describe here the characterization of a novel enzyme called aldose-aldose oxidoreductase (Cc AAOR; EC 1.1.99) from Caulobacter crescentus. The Cc AAOR exists in solution as a dimer, belongs to the Gfo/Idh/MocA family and shows homology with the glucose-fructose oxidoreductase from Zymomonas mobilis. However, unlike other known members of this protein family, Cc AAOR is specific for aldose sugars and can be in the same catalytic cycle both oxidise and reduce a panel of monosaccharides at the C1 position, producing in each case the corresponding aldonolactone and alditol, respectively. Cc AAOR contains a tightly-bound nicotinamide cofactor, which is regenerated in this oxidation-reduction cycle. The highest oxidation activity was detected on D-glucose but significant activity was also observed on D-xylose, L-arabinose and D-galactose, revealing that both hexose and pentose sugars are accepted as substrates by Cc AAOR. The configuration at the C2 and C3 positions of the saccharides was shown to be especially important for the substrate binding. Interestingly, besides monosaccharides, Cc AAOR can also oxidise a range of 1,4-linked oligosaccharides having aldose unit at the reducing end, such as lactose, malto- and cello-oligosaccharides as well as xylotetraose. (1)H NMR used to monitor the oxidation and reduction reaction simultaneously, demonstrated that although D-glucose has the highest affinity and is also oxidised most efficiently by Cc AAOR, the reduction of D-glucose is clearly not as efficient. For the overall reaction catalysed by Cc AAOR, the L-arabinose, D-xylose and D-galactose were the most potent substrates.


Asunto(s)
Aldehído Reductasa/metabolismo , Caulobacter crescentus/enzimología , Monosacáridos/metabolismo , Biocatálisis , Caulobacter crescentus/metabolismo , Glucosa/metabolismo , Resonancia Magnética Nuclear Biomolecular , Oxidorreductasas/metabolismo , Homología de Secuencia de Aminoácido , Xilosa/metabolismo , Zymomonas/enzimología , Zymomonas/metabolismo
4.
J Biol Chem ; 287(21): 17662-17671, 2012 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-22493433

RESUMEN

Microorganisms use different pathways for D-galacturonate catabolism. In the known microbial oxidative pathway, D-galacturonate is oxidized to D-galactarolactone, the lactone hydrolyzed to galactarate, which is further converted to 3-deoxy-2-keto-hexarate and α-ketoglutarate. We have shown recently that Agrobacterium tumefaciens strain C58 contains an uronate dehydrogenase (At Udh) that oxidizes D-galacturonic acid to D-galactarolactone. Here we report identification of a novel enzyme from the same A. tumefaciens strain, which we named Galactarolactone cycloisomerase (At Gci) (E.C. 5.5.1.-), for the direct conversion of the D-galactarolactone to 3-deoxy-2-keto-hexarate. The At Gci enzyme is 378 amino acids long and belongs to the mandelate racemase subgroup in the enolase superfamily. At Gci was heterologously expressed in Escherichia coli, and the purified enzyme was found to exist as an octameric form. It is active both on D-galactarolactone and D-glucarolactone, but does not work on the corresponding linear hexaric acid forms. The details of the reaction mechanism were further studied by NMR and optical rotation demonstrating that the reaction product of At Gci from D-galactaro-1,4-lactone and D-glucaro-1,4-lactone conversion is in both cases the L-threo form of 3-deoxy-2-keto-hexarate.


Asunto(s)
Agrobacterium tumefaciens/enzimología , Proteínas Bacterianas/metabolismo , Liasas Intramoleculares/metabolismo , Lactonas/metabolismo , Agrobacterium tumefaciens/genética , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Liasas Intramoleculares/genética , Datos de Secuencia Molecular
5.
Chemphyschem ; 14(10): 2225-31, 2013 Jul 22.
Artículo en Inglés | MEDLINE | ID: mdl-23757174

RESUMEN

The article describes the construction, immobilisation and electrochemistry of histidine tagged laccase from Melanocarpus albomyces. A facile method of functionalisation of glassy carbon electrodes with nitrilotriacetic acid (NTA) using diazonium grafting and solid state chemistry is described. NTA-modified electrodes are shown to bind laccase which reduces oxygen at neutral pH in the presence of soluble redox mediator. Laccase-modified electrodes are also prepared by enzyme immobilisation within poly(aniline)/poly(vinylsulfonate) films. The polymer is found to efficiently retain the enzyme as well as provide direct electrical contact between the electrode and the enzyme active centre. Cyclic voltammetry reveals the direct electron transfer to the enzyme is dependent on the redox state of the polymer film.


Asunto(s)
Ascomicetos/enzimología , Técnicas Electroquímicas , Histidina/metabolismo , Lacasa/metabolismo , Ácido Nitrilotriacético/metabolismo , Compuestos de Anilina/química , Compuestos de Anilina/metabolismo , Carbono/química , Carbono/metabolismo , Compuestos de Diazonio/química , Compuestos de Diazonio/metabolismo , Conductividad Eléctrica , Electrodos , Histidina/química , Lacasa/química , Ácido Nitrilotriacético/química , Oxidación-Reducción , Oxígeno/química , Oxígeno/metabolismo , Polivinilos/química , Polivinilos/metabolismo , Propiedades de Superficie
6.
J Biol Chem ; 286(31): 27294-300, 2011 Aug 05.
Artículo en Inglés | MEDLINE | ID: mdl-21676870

RESUMEN

Uronate dehydrogenase from Agrobacterium tumefaciens (AtUdh) belongs to the short-chain dehydrogenase/reductase superfamily and catalyzes the oxidation of D-galacturonic acid and D-glucuronic acid with NAD(+) as a cofactor. We have determined the crystal structures of an apo-form of AtUdh, a ternary form in complex with NADH and product (substrate-soaked structure), and an inactive Y136A mutant in complex with NAD(+). The crystal structures suggest AtUdh to be a homohexamer, which has also been observed to be the major form in solution. The monomer contains a Rossmann fold, essential for nucleotide binding and a common feature of the short-chain dehydrogenase/reductase family enzymes. The ternary complex structure reveals a product, D-galactaro-1,5-lactone, which is bound above the nicotinamide ring. This product rearranges in solution to D-galactaro-1,4-lactone as verified by mass spectrometry analysis, which agrees with our previous NMR study. The crystal structure of the mutant with the catalytic residue Tyr-136 substituted with alanine shows changes in the position of Ile-74 and Ser-75. This probably altered the binding of the nicotinamide end of NAD(+), which was not visible in the electron density map. The structures presented provide novel insights into cofactor and substrate binding and the reaction mechanism of AtUdh. This information can be applied to the design of efficient microbial conversion of D-galacturonic acid-based waste materials.


Asunto(s)
Agrobacterium tumefaciens/enzimología , Aldehído Oxidorreductasas/química , Aldehído Oxidorreductasas/genética , Aldehído Oxidorreductasas/metabolismo , Biocatálisis , Cromatografía en Gel , Clonación Molecular , Cristalización , Cristalografía por Rayos X , Modelos Moleculares , Oxidación-Reducción , Conformación Proteica , Espectrometría de Masa por Ionización de Electrospray
7.
Biochim Biophys Acta ; 1804(4): 899-908, 2010 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-20056172

RESUMEN

The electrochemical studies of laccase-mediator systems are aimed at understanding the mechanism of their redox transformation and their efficiency in both homogeneous and heterogeneous reactions; this topic has paramount application spanning from bleaching of paper pulp and the enzymatic degradation of lignin to the biosensors and biofuel cell development. In this paper four different laccases from Trametes hirsuta (ThL), Trametes versicolor (TvL), Melanocarpus albomyces (r-MaL) and Rhus vernicifera (RvL) were characterized from both biochemical and electrochemical points of view. Two of them (TvL and ThL) are high redox potential and two (RvL and r-MaL) are low redox potential laccases. The outline of this work is focused on the determination of catalytic and bioelectrochemical properties of these four enzymes in homogenous solution as well as immobilized onto electrode surface in the presence of a set of different redox mediators. The results measured in the homogenous reaction system correlated well with those measured with the immobilized enzymes. In addition, they are in good agreement with those reported with reference techniques, suggesting that the electrochemical methods employed in this work can be applied well in place of the traditional techniques commonly used for the kinetic characterization of laccases. These results are also discussed in terms of the known amino acid sequences and three-dimensional (3D) structures of the laccases.


Asunto(s)
Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Lacasa/química , Lacasa/metabolismo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Secuencia de Aminoácidos , Catálisis , Técnicas Electroquímicas , Enzimas Inmovilizadas , Proteínas Fúngicas/genética , Cinética , Lacasa/genética , Datos de Secuencia Molecular , Oxidación-Reducción , Proteínas de Plantas/genética , Rhus/enzimología , Rhus/genética , Homología de Secuencia de Aminoácido , Sordariales/enzimología , Sordariales/genética , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Trametes/enzimología , Trametes/genética
8.
Appl Environ Microbiol ; 76(1): 169-75, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19897761

RESUMEN

D-galacturonic acid can be obtained by hydrolyzing pectin, which is an abundant and low value raw material. By means of metabolic engineering, we constructed fungal strains for the conversion of D-galacturonate to meso-galactarate (mucate). Galactarate has applications in food, cosmetics, and pharmaceuticals and as a platform chemical. In fungi D-galacturonate is catabolized through a reductive pathway with a D-galacturonate reductase as the first enzyme. Deleting the corresponding gene in the fungi Hypocrea jecorina and Aspergillus niger resulted in strains unable to grow on D-galacturonate. The genes of the pathway for D-galacturonate catabolism were upregulated in the presence of D-galacturonate in A. niger, even when the gene for D-galacturonate reductase was deleted, indicating that D-galacturonate itself is an inducer for the pathway. A bacterial gene coding for a D-galacturonate dehydrogenase catalyzing the NAD-dependent oxidation of D-galacturonate to galactarate was introduced to both strains with disrupted D-galacturonate catabolism. Both strains converted D-galacturonate to galactarate. The resulting H. jecorina strain produced galactarate at high yield. The A. niger strain regained the ability to grow on d-galacturonate when the D-galacturonate dehydrogenase was introduced, suggesting that it has a pathway for galactarate catabolism.


Asunto(s)
Aspergillus niger/enzimología , Ingeniería Genética , Ácidos Hexurónicos/metabolismo , Hypocrea/enzimología , Redes y Vías Metabólicas/genética , Azúcares Ácidos/metabolismo , Aspergillus niger/genética , Proteínas Bacterianas/genética , Biotransformación , Eliminación de Gen , Regulación Enzimológica de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Hypocrea/genética , Recombinación Genética
9.
Appl Microbiol Biotechnol ; 86(3): 901-9, 2010 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-19921179

RESUMEN

There are at least three different pathways for the catabolism of D-galacturonate in microorganisms. In the oxidative pathway, which was described in some prokaryotic species, D-galacturonate is first oxidised to meso-galactarate (mucate) by a nicotinamide adenine dinucleotide (NAD)-dependent dehydrogenase (EC 1.1.1.203). In the following steps of the pathway mucate is converted to 2-keto-glutarate. The enzyme activities of this catabolic pathway have been described while the corresponding gene sequences are still unidentified. The D-galacturonate dehydrogenase was purified from Agrobacterium tumefaciens, and the mass of its tryptic peptides was determined using MALDI-TOF mass spectrometry. This enabled the identification of the corresponding gene udh. It codes for a protein with 267 amino acids having homology to the protein family of NAD(P)-binding Rossmann-fold proteins. The open reading frame was functionally expressed in Saccharomyces cerevisiae. The N-terminally tagged protein was not compromised in its activity and was used after purification for a kinetic characterization. The enzyme was specific for NAD and accepted D-galacturonic acid and D-glucuronic acid as substrates with similar affinities. NMR analysis showed that in water solution the substrate D-galacturonic acid is predominantly in pyranosic form which is converted by the enzyme to 1,4 lactone of galactaric acid. This lactone seems stable under intracellular conditions and does not spontaneously open to the linear meso-galactaric acid.


Asunto(s)
Agrobacterium tumefaciens/enzimología , Aldehído Oxidorreductasas/genética , Aldehído Oxidorreductasas/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Ácidos Hexurónicos/metabolismo , Aldehído Oxidorreductasas/química , Aldehído Oxidorreductasas/aislamiento & purificación , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Clonación Molecular , Expresión Génica , Ácido Glucurónico/metabolismo , Cinética , Espectroscopía de Resonancia Magnética , Redes y Vías Metabólicas , Modelos Biológicos , Peso Molecular , NAD/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/aislamiento & purificación , Proteínas Recombinantes de Fusión/metabolismo , Saccharomyces cerevisiae/genética , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Especificidad por Sustrato , Azúcares Ácidos/metabolismo
10.
Glycobiology ; 19(10): 1116-26, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19596709

RESUMEN

Surface plasmon resonance (SPR) has been used to assay the roles of amino acid residues in the substrate binding cleft of Trichoderma harzianum chitinase Chit42, which belongs to the glycoside hydrolase family 18 (GH-18). Nine different Chit42 variants having amino acid mutations along the binding site cleft at subsites -4 to +2 were created and characterized with regard to their affinity toward chitinous and non-chitinous oligosaccharides. The catalytically inactive Chit42 mutant E172Q was used as the template for making the additional mutations. The E172Q mutant bound chitinoligosaccharides (tetra-, penta- and hexamer) with an increasing affinity from 12 to 0.2 microM whereas no binding of chitinbiose, -triose or 3'-sialyl-N-acetyllactosamine (Neu5Acalpha-3Galbeta-4GlcNAc) could be measured, indicative of significantly lower affinity for these shorter oligosaccharides. The strongest binding affinity was displayed toward allosamidin, a transition state analog (K(d) = 3 nM), and this was shown to be dependent on the E172 residue, the acid/base catalyst of Chit42. Hydrogen bonding by the glutamic acid E317 between subsites -2 and -3 and particularly the stacking interactions by tryptophanes at subsites -3 and +2 provided to be important, as mutations to these amino acids had a substantial negative effect to the overall binding affinity. Moreover, the substrate binding specificity of Chit42 could be altered toward binding of GlcNbeta-4(GlcNAc)(4) by providing a counter charge through substitution of residue T133 at subsite -3 against aspartic acid. In addition, the introduction of glutamine and particularly an asparagine residue at position 133 seemed to broaden the substrate preference of Chit42 toward Galbeta-4(GlcNAc)(4).


Asunto(s)
Quitinasas/química , Quitinasas/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Oligosacáridos/química , Oligosacáridos/metabolismo , Trichoderma/enzimología , Sitios de Unión , Biocatálisis , Secuencia de Carbohidratos , Quitinasas/genética , Quitinasas/aislamiento & purificación , Dicroismo Circular , Cristalografía por Rayos X , Proteínas Fúngicas/genética , Proteínas Fúngicas/aislamiento & purificación , Modelos Moleculares , Datos de Secuencia Molecular , Mutación/genética , Unión Proteica , Estructura Terciaria de Proteína , Especificidad por Sustrato , Resonancia por Plasmón de Superficie
11.
Glycobiology ; 19(6): 633-43, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19240268

RESUMEN

Carbohydrate-protein interactions govern many crucial life processes involved in cell recognition events, but are often difficult to study because the interactions are weak, and multivalent exposure appears to be crucial for their biological function. We have used self-assembled monolayers (SAMs) of neoglycoconjugates as a model system to probe the specific interactions between the lectin wheat germ agglutinin (WGA) and monosaccharides by surface plasmon resonance (SPR) and atomic force microscopy (AFM) force measurements. SAMs presenting N-acetyl-D-glucosamine (GlcNAc) as a neoglycoconjugate were produced on gold surfaces, where the SAM formation was monitored using a quartz crystal microbalance (QCM) and shown to be a very rapid process. In the AFM force measurements WGA was covalently coupled to flexible polyethylene glycol (PEG) molecules at a probe surface using amine coupling. GlcNAc-specific binding events were detected with a WGA-modified probe on the GlcNAc-neoglycoconjugate SAM at bond rupture forces of 47 +/- 15 pN. Additionally, less frequent GlcNAc-specific unbinding events were detected at higher forces (120 +/- 20 pN) which are believed to originate from simultaneous detachment of multiple binding sites from the SAM surface. SPR measurements confirmed that WGA has higher affinity toward the immobilized GlcNAc-SAM than toward the soluble free monosaccharide. The binding constants obtained for soluble chitinoligosaccharides suggested up to three subsites within one carbohydrate-binding site of the WGA molecule and also provided further evidence of the multivalent binding character of the WGA dimer.


Asunto(s)
Acetilglucosamina/química , Glicoconjugados/química , Aglutininas del Germen de Trigo/química , Sitios de Unión , Microscopía de Fuerza Atómica , Unión Proteica , Resonancia por Plasmón de Superficie
12.
Appl Microbiol Biotechnol ; 83(2): 261-72, 2009 May.
Artículo en Inglés | MEDLINE | ID: mdl-19148633

RESUMEN

Two different types of approach were taken to improve the hydrolytic activity towards crystalline cellulose at elevated temperatures of Melanocarpus albomyces Cel7B (Ma Cel7B), a single-module GH-7 family cellobiohydrolase. Structure-guided protein engineering was used to introduce an additional tenth disulphide bridge to the Ma Cel7B catalytic module. In addition, a fusion protein was constructed by linking a cellulose-binding module (CBM) and a linker from the Trichoderma reesei Cel7A to the C terminus of Ma Cel7B. Both approaches proved successful. The disulphide bridge mutation G4C/M70C located near the N terminus, close to the entrance of the active site tunnel of Ma Cel7B, led to improved thermostability (DeltaT (m) = 2.5 degrees C). By adding the earlier found thermostability-increasing mutation S290T (DeltaT (m) = 1.5 degrees C) together with the disulphide bridge mutation, the unfolding temperature was increased by 4 degrees C (mutant G4C/M70C/S290T) compared to that of the wild-type enzyme, thus showing an additive effect on thermostability. Both disulphide mutants had increased activity towards microcrystalline cellulose (Avicel) at 75 degrees C, apparently solely because of their improved thermostability. The addition of a CBM also improved the thermostability (DeltaT (m) = 2.5 degrees C) and caused a clear (sevenfold) increase in the hydrolysis activity of Ma Cel7B towards Avicel at 70 degrees C.


Asunto(s)
Celulosa 1,4-beta-Celobiosidasa/química , Celulosa 1,4-beta-Celobiosidasa/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Ingeniería de Proteínas , Sordariales/enzimología , Celulosa 1,4-beta-Celobiosidasa/genética , Estabilidad de Enzimas , Proteínas Fúngicas/genética , Calor , Hidrólisis , Cinética , Sordariales/química , Sordariales/genética
13.
AMB Express ; 9(1): 48, 2019 Apr 11.
Artículo en Inglés | MEDLINE | ID: mdl-30972503

RESUMEN

The oxidative D-xylose pathway, i.e. Dahms pathway, can be utilised to produce from cheap biomass raw material useful chemical intermediates. In vitro metabolic pathways offer a fast way to study the rate-limiting steps and find the most suitable enzymes for each reaction. We have constructed here in vitro multi-enzyme cascades leading from D-xylose or D-xylonolactone to ethylene glycol, glycolic acid and lactic acid, and use simple spectrophotometric assays for the read-out of the efficiency of these pathways. Based on our earlier results, we focussed particularly on the less studied xylonolactone ring opening (hydrolysis) reaction. The bacterial Caulobacter crescentus lactonase (Cc XylC), was shown to be a metal-dependent enzyme clearly improving the formation of D-xylonic acid at pH range from 6 to 8. The following dehydration reaction by the ILVD/EDD family D-xylonate dehydratase is a rate-limiting step in the pathway, and an effort was made to screen for novel enolase family D-xylonate dehydratases, however, no suitable replacing enzymes were found for this reaction. Concerning the oxidation of glycolaldehyde to glycolic acid, several enzyme candidates were also tested. Both Escherichia coli aldehyde dehydrogenase (Ec AldA) and Azospirillum brasilense α-ketoglutarate semialdehyde dehydrogenase (Ab AraE) proved to be suitable enzymes for this reaction.

14.
FEBS J ; 275(10): 2482-8, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18400031

RESUMEN

There are two distinctly different pathways for the catabolism of l-rhamnose in microorganisms. One pathway with phosphorylated intermediates was described in bacteria; here the enzymes and the corresponding gene sequences are known. The other pathway has no phosphorylated intermediates and has only been described in eukaryotic microorganisms. For this pathway, the enzyme activities have been described but not the corresponding gene sequences. The first enzyme in this catabolic pathway is the NAD-utilizing L-rhamnose 1-dehydrogenase. The enzyme was purified from the yeast Pichia stipitis, and the mass of its tryptic peptides was determined using MALDI-TOF MS. This enabled the identification of the corresponding gene, RHA1. It codes for a protein with 258 amino acids belonging to the protein family of short-chain alcohol dehydrogenases. The ORF was expressed in Saccharomyces cerevisiae. As the gene contained a CUG codon that codes for serine in P. stipitis but for leucine in S. cerevisiae, this codon has changed so that the same amino acid was expressed in S. cerevisiae. The heterologous protein showed the highest activity and affinity with L-rhamnose and a lower activity and affinity with L-mannose and L-lyxose. The enzyme was specific for NAD. A northern blot analysis revealed that transcription in P. stipitis is induced during growth on L-rhamnose but not on other carbon sources.


Asunto(s)
Genes Fúngicos , Pichia , Ramnosa/metabolismo , Deshidrogenasas del Alcohol de Azúcar , Regulación Enzimológica de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Estructura Molecular , Mutagénesis Sitio-Dirigida , Sistemas de Lectura Abierta , Pichia/enzimología , Pichia/genética , Ramnosa/química , Deshidrogenasas del Alcohol de Azúcar/genética , Deshidrogenasas del Alcohol de Azúcar/metabolismo
15.
J Mol Biol ; 333(4): 817-29, 2003 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-14568538

RESUMEN

The exo-loop of Trichoderma reesei cellobiohydrolase Cel7A forms the roof of the active site tunnel at the catalytic centre. Mutants were designed to study the role of this loop in crystalline cellulose degradation. A hydrogen bond to substrate made by a tyrosine at the tip of the loop was removed by the Y247F mutation. The mobility of the loop was reduced by introducing a new disulphide bridge in the mutant D241C/D249C. The tip of the loop was deleted in mutant Delta(G245-Y252). No major structural disturbances were observed in the mutant enzymes, nor was the thermostability of the enzyme affected by the mutations. The Y247F mutation caused a slight k(cat) reduction on 4-nitrophenyl lactoside, but only a small effect on cellulose hydrolysis. Deletion of the tip of the loop increased both k(cat) and K(M) and gave reduced product inhibition. Increased activity was observed on amorphous cellulose, while only half the original activity remained on crystalline cellulose. Stabilisation of the exo-loop by the disulphide bridge enhanced the activity on both amorphous and crystalline cellulose. The ratio Glc(2)/(Glc(3)+Glc(1)) released from cellulose, which is indicative of processive action, was highest with Tr Cel7A wild-type enzyme and smallest with the deletion mutant on both substrates. Based on these data it seems that the exo-loop of Tr Cel7A has evolved to facilitate processive crystalline cellulose degradation, which does not require significant conformational changes of this loop.


Asunto(s)
Celulosa 1,4-beta-Celobiosidasa/química , Phanerochaete/enzimología , Ingeniería de Proteínas , Estructura Secundaria de Proteína , Trichoderma/enzimología , Secuencia de Aminoácidos , Sitios de Unión , Celulosa 1,4-beta-Celobiosidasa/genética , Celulosa 1,4-beta-Celobiosidasa/metabolismo , Cristalografía por Rayos X , Estabilidad de Enzimas , Modelos Moleculares , Datos de Secuencia Molecular , Mutación , Desnaturalización Proteica , Estructura Terciaria de Proteína , Alineación de Secuencia
16.
J Agric Food Chem ; 60(24): 6223-9, 2012 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-22655797

RESUMEN

Sodium caseinate was modified by transglutaminase catalyzed cross-linking reaction prior to the emulsification process in order to study the effect of cross-linking on the oxidative stability of protein stabilized emulsions. The extent of the cross-linking catalyzed by different dosages of transglutaminase was investigated by following the ammonia production during the reaction and using SDS-PAGE gel. O/W emulsions prepared with the cross-linked and non-cross-linked sodium caseinates were stored for 30 days under the same conditions. Peroxide value measurement, oxygen consumption measurement, and headspace gas chromatography analysis were used to study the oxidative stability of the emulsions. The emulsion made of the cross-linked sodium caseinate showed an improved oxidative stability with reduced formation of fatty acid hydroperoxides and volatiles and a longer period of low rate oxygen consumption. The improving effect of transglutaminase catalyzed cross-linking could be most likely attributed to the enhanced physical stability of the interfacial protein layer against competitive adsorption by oil oxidation products.


Asunto(s)
Caseínas/metabolismo , Reactivos de Enlaces Cruzados/metabolismo , Emulsiones/química , Aceite de Linaza/química , Transglutaminasas/metabolismo , Amoníaco/metabolismo , Estabilidad de Medicamentos , Electroforesis en Gel de Poliacrilamida , Peróxidos Lipídicos/metabolismo , Oxidación-Reducción , Oxígeno/metabolismo
17.
J Agric Food Chem ; 59(4): 1406-14, 2011 Feb 23.
Artículo en Inglés | MEDLINE | ID: mdl-21247171

RESUMEN

Whey protein isolate (WPI) was chemically modified by vanillic acid in order to enhance its cross-linkability by laccase enzyme. Incorporation of methoxyphenol groups created reactive sites for laccase on the surface of the protein and improved the efficiency of cross-linking. The vanillic acid modified WPI (Van-WPI) was characterized using MALDI-TOF mass spectrometry, and the laccase-catalyzed cross-linking of Van-WPI was studied. Furthermore, the vanillic acid modification was compared with the conventional approach to improve laccase-catalyzed cross-linking by adding free phenolic compounds. A small extent of the vanillic acid modification significantly improved the cross-linkability of the protein and made it possible to avoid color formation in a system that is free of small phenolic compounds. Moreover, the potential application of Van-WPI as emulsifier and the effect of cross-linking on the stability of Van-WPI emulsion were investigated. The post-emulsification cross-linking by laccase was proven to enhance the storage stability of Van-WPI emulsion.


Asunto(s)
Reactivos de Enlaces Cruzados/metabolismo , Emulsionantes/química , Lacasa/metabolismo , Proteínas de la Leche/química , Proteínas de la Leche/metabolismo , Emulsiones/química , Aceite de Linaza , Tamaño de la Partícula , Ácido Vanílico/química , Agua , Proteína de Suero de Leche
18.
J Agric Food Chem ; 59(24): 13246-53, 2011 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-22060038

RESUMEN

Whey protein isolate was modified by ethylene diamine in order to shift its isoelectric point to an alkaline pH. The extent of the modification was studied using SDS-PAGE and MALDI-TOF mass spectrometry. The modified whey proteins were used as an emulsifier to stabilize oil-in-water emulsions at acidic and neutral pH ranges, and their emulsifying properties were compared with that of the unmodified whey proteins and with the previously studied ethylene diamine modified sodium caseinate. The emulsifying activity of the modified whey proteins was similar to that of the unmodified ones, but the stability of an emulsion at pH 5 was significantly improved after the modification. Charge and coverage of droplet surface and the displacement of the interfacial proteins by surfactant Tween 20 were further studied as a function of pH. As compared with the unmodified whey proteins, the modified ones were proven to cover the interface more efficiently with extensive surface charge at pH 5, although the interfacial layer was less resistant to the surfactant displacement.


Asunto(s)
Emulsionantes/química , Proteínas de la Leche/química , Estabilidad de Medicamentos , Electroforesis en Gel de Poliacrilamida , Emulsiones/química , Etilenodiaminas/química , Concentración de Iones de Hidrógeno , Punto Isoeléctrico , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Proteína de Suero de Leche
19.
FEBS J ; 278(13): 2283-95, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21535408

RESUMEN

Laccases are copper-containing enzymes used in various applications, such as textile bleaching. Several crystal structures of laccases from fungi and bacteria are available, but ascomycete types of fungal laccases (asco-laccases) have been rather unexplored, and to date only the crystal structure of Melanocarpus albomyces laccase (MaL) has been published. We have now solved the crystal structure of another asco-laccase, from Thielavia arenaria (TaLcc1), at 2.5 Å resolution. The loops near the T1 copper, forming the substrate-binding pockets of the two asco-laccases, differ to some extent, and include the amino acid thought to be responsible for catalytic proton transfer, which is Asp in TaLcc1, and Glu in MaL. In addition, the crystal structure of TaLcc1 does not have a chloride attached to the T2 copper, as observed in the crystal structure of MaL. The unique feature of TaLcc1 and MaL as compared with other laccases structures is that, in both structures, the processed C-terminus blocks the T3 solvent channel leading towards the trinuclear centre, suggesting a common functional role for this conserved 'C-terminal plug'. We propose that the asco-laccases utilize the C-terminal carboxylic group in proton transfer processes, as has been suggested for Glu498 in the CotA laccase from Bacillus subtilis. The crystal structure of TaLcc1 also shows the formation of a similar weak homodimer, as observed for MaL, that may determine the properties of these asco-laccases at high protein concentrations.


Asunto(s)
Lacasa/química , Sordariales/enzimología , Catálisis , Cristalografía por Rayos X , Lacasa/metabolismo , Modelos Moleculares , Conformación Proteica , Multimerización de Proteína
20.
Annu Rev Food Sci Technol ; 1: 113-38, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-22129332

RESUMEN

Different possibilities for protein crosslinking are examined in this review, with special emphasis on enzymatic crosslinking and its impact on food structure. Among potential enzymes for protein crosslinking are transglutaminase (TG) and various oxidative enzymes. Crosslinking enzymes can be applied in cereal, dairy, meat, and fish processing to improve the texture of the product. Most of the current commercial applications are based on TG. The reaction mechanisms of the crosslinking enzymes differ, which in turn results in different technological properties.


Asunto(s)
Proteínas en la Dieta/metabolismo , Tecnología de Alimentos , Alimentos Formulados/análisis , Proteínas/química , Fenómenos Químicos , Productos Lácteos/análisis , Grano Comestible/química , Productos Pesqueros/análisis , Productos de la Carne/análisis , Oxidorreductasas/metabolismo , Conformación Proteica , Transglutaminasas/metabolismo
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