Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019.

The high economic impact and zoonotic potential of avian influenza call for detailed investigations of dispersal dynamics of epidemics. We integrated phylogeographic and epidemiologic analyses to investigate the dynamics of a low pathogenicity avian influenza (H3N1) epidemic that occurred in Belgium during 2019. Virus genomes from 104 clinical samples originating from 85% of affected farms were sequenced. A spatially explicit phylogeographic analysis confirmed a dominating northeast to southwest dispersal direction and a long-distance dispersal event linked to direct live animal transportation between farms. Spatiotemporal clustering, transport, and social contacts strongly correlated with the phylogeographic pattern of the epidemic. We detected only a limited association between wind direction and direction of viral lineage dispersal. Our results highlight the multifactorial nature of avian influenza epidemics and illustrate the use of genomic analyses of virus dispersal to complement epidemiologic and environmental data, improve knowledge of avian influenza epidemiologic dynamics, and enhance control strategies.

COVID-19 Crisis Reduces Free Tropospheric Ozone Across the Northern Hemisphere.

Throughout spring and summer 2020, ozone stations in the northern extratropics recorded unusually low ozone in the free troposphere. From April to August, and from 1 to 8 kilometers altitude, ozone was on average 7% (≈4 nmol/mol) below the 2000-2020 climatological mean. Such low ozone, over several months, and at so many stations, has not been observed in any previous year since at least 2000. Atmospheric composition analyses from the Copernicus Atmosphere Monitoring Service and simulations from the NASA GMI model indicate that the large 2020 springtime ozone depletion in the Arctic stratosphere contributed less than one-quarter of the observed tropospheric anomaly. The observed anomaly is consistent with recent chemistry-climate model simulations, which assume emissions reductions similar to those caused by the COVID-19 crisis. COVID-19 related emissions reductions appear to be the major cause for the observed reduced free tropospheric ozone in 2020.

A baseline for source localisation using the inverse modelling tool FREAR.

A global network of monitoring stations is set up that can measure tiny concentrations of airborne radioactivity as part of the verification regime of the Comprehensive Nuclear-Test-Ban Treaty. If Treaty-relevant detections are made, inverse atmospheric transport modelling is one of the methods that can be used to determine the source of the radioactivity. In order to facilitate the testing of novel developments in inverse modelling, two sets of test cases are constructed using real-world 133Xe detections associated with routine releases from a medical isotope production facility. One set consists of 24 cases with 5 days of observations in each case, and another set consists of 8 cases with 15 days of observations in each case. A series of inverse modelling techniques and several sensitivity experiments are applied to determine the (known) location of the medical isotope production facility. Metrics are proposed to quantify the quality of the source localisation. Finally, it is illustrated how the sets of test cases can be used to test novel developments in inverse modelling algorithms.

Uncertainty quantification of atmospheric transport and dispersion modelling using ensembles for CTBT verification applications.

Airborne concentrations of specific radioactive xenon isotopes (referred to as "radioxenon") are monitored globally as part of the verification regime of the Comprehensive Nuclear-Test-Ban Treaty, as these could be the signatures of a nuclear explosion. However, civilian nuclear facilities emit a regulated amount of radioxenon that can interfere with the very sensitive monitoring network. One approach to deal with this civilian background of radioxenon for Treaty verification purposes, is to explicitly simulate the expected radioxenon concentration from civilian sources at monitoring stations using atmospheric transport modelling. However, atmospheric transport modelling is prone to uncertainty, and the absence of an uncertainty quantification can limit its use for detection screening. In this paper, several ensembles are assessed that could provide an atmospheric transport modelling uncertainty quantification. These ensembles are validated with radioxenon observations, and recommendations are given for atmospheric transport modelling uncertainty quantification. Finally, the added value of an ensemble for detection screening is illustrated.

Modelling grass pollen levels in Belgium.

Biogenic aerosols such as airborne grass pollen affect the public health badly by putting additional distress on people already suffering from cardiovascular and respiratory diseases. In Belgium, daily airborne pollen concentrations are monitored offline at a few sites only, hampering the timely coverage of the country and short-term forecasts. Here we apply the Chemistry Transport Model SILAM to the Belgian territory to model the spatio-temporal airborne grass pollen levels near the surface based on bottom-up inventories of grass pollen emissions updated with the Copernicus land monitoring Service grassland map of 2015. Transport of aerosols in SILAM is driven by ECMWF ERA5 meteorological data. The emitted grass pollen amounts in SILAM are computed by the multiplication of the grass pollen source map with the release rate determined by the seasonal shape production curve during the grass flowering period. The onset and offset of this period follow a location-dependent prescribed calendar days. Here we optimize the grass pollen seasonal start and end in SILAM by comparing a 2008-2018 time series of daily airborne grass pollen concentrations from the Belgian aerobiological surveillance network with the simulations. The effect of the spatial distribution of grass pollen sources is quantified by constructing pollen source-receptor relations using model simulations with varying grass pollen emissions in five areas of the model domain as input. Up to 33% of the airborne grass pollen in one area was transport from others areas inside Belgium. Adjusting the start and end of the grass pollen season improved the model performance substantially by almost doubling the correlation with local observations. By introducing the temporal scaling of the inter-seasonal pollen amounts in the model, an additional R2 increase up to 22% was obtained. Further improvements can be made by including more detailed grass pollen sources and more dynamic start and end dates of the pollen season.

Long-Term Pollen Monitoring in the Benelux: Evaluation of Allergenic Pollen Levels and Temporal Variations of Pollen Seasons.

Airborne pollen is a major cause of allergic rhinitis, affecting between 10 and 30% of the population in Belgium, the Netherlands, and Luxembourg (Benelux). Allergenic pollen is produced by wind pollinating plants and released in relatively low to massive amounts. Current climate changes, in combination with increasing urbanization, are likely to affect the presence of airborne allergenic pollen with respect to exposure intensity, timing as well as duration. Detailed analysis of long-term temporal trends at supranational scale may provide more comprehensive insight into these phenomena. To this end, the Spearman correlation was used to statistically compare the temporal trends in airborne pollen concentration monitored at the aerobiological stations which gathered the longest time-series (30-44 years) in the Benelux with a focus on the allergenic pollen taxa: Alnus, Corylus, Betula, Fraxinus, Quercus, Platanus, Poaceae, and Artemisia. Most arboreal species showed an overall trend toward an increase in the annual pollen integral and peak values and an overall trend toward an earlier start and end of the pollen season, which for Betula resulted in a significant decrease in season length. For the herbaceous species (Poaceae and Artemisia), the annual pollen integral and peak values showed a decreasing trend. The season timing of Poaceae showed a trend toward earlier starts and longer seasons in all locations. In all, these results show that temporal variations in pollen levels almost always follow a common trend in the Benelux, suggesting a similar force of climate change-driven factors, especially for Betula where a clear positive correlation was found between changes in temperature and pollen release over time. However, some trends were more local-specific indicating the influence of other environmental factors, e.g., the increasing urbanization in the surroundings of these monitoring locations. The dynamics in the observed trends can impact allergic patients by increasing the severity of symptoms, upsetting the habit of timing of the season, complicating diagnosis due to overlapping pollen seasons and the emergence of new symptoms due allergens that were weak at first.