An investigation into the dependence of virtual observation point-based specific absorption rate calculation complexity on number of channels.

PURPOSE: This study aims to find a relation between the number of channels and the computational burden for specific absorption rate (SAR) calculation using virtual observation point-based SAR compression. METHODS: Eleven different arrays of rectangular loops covering a cylinder of fixed size around the head of an anatomically correct voxel model were simulated. The resulting Q-matrices were compressed with 2 different compression algorithms, with the overestimation fixed to a certain fraction of worst-case SAR, median SAR, or minimum SAR. The latter 2 were calculated from 1e6 normalized random excitation vectors. RESULTS: The number of virtual observation points increased with the number of channels to the power of 2.3-3.7, depending on the compression algorithm when holding the relative error fixed. Together with the increase in the size of the Q-matrices (and therefore the size of the virtual observation points), the total increase in computational burden with the number of channels was to the power of 4.3-5.7. CONCLUSION: The computational cost emphasizes the need to use the best possible compression algorithms when moving to high channel counts.

Numerical comparison of local transceiver arrays of fractionated dipoles and microstrip antennas for body imaging at 7 T.

Longitudinally orientated dipoles and microstrip antennas have both demonstrated superior results as RF transmit elements for body imaging at 7 T MRI, and are as of today the most commonly used transmit elements. In this study, the performances of the two antenna concepts were compared for use in local RF antenna arrays by numerical simulations. Antenna elements investigated are the fractionated dipole and the microstrip line with meander structures. Phantom simulations with a single antenna element were performed and evaluated with regard to specific absorption rate (SAR) efficiency in the center of the subject. Simulations of array configurations with 8 and 16 elements were performed with anatomical body models. Both antenna elements were combined with a loop coil to compare hybrid configurations. Singular value decomposition of the B1+ fields, RF shimming, and calculation of the voxel-wise power and SAR efficiencies were performed in regions of interest with varying sizes to evaluate the transmit performance. The signal-to-noise ratio (SNR) was evaluated to estimate the receive performance. Simulated data show similar transmit profiles for the two antenna types in the center of the phantom (penetration depth > 20 mm). For body imaging, no considerable differences were determined for the different antenna configurations with regard to the transmit performance. Results show the advantage of 16 transmit channels compared with today's commonly used 8-channel systems (minimum RF shimming excitation error of 4.7% (4.3%) versus 2.7% (2.8%) for the 8-channel and 16-channel configurations with the microstrip antennas in a (5 cm)3 cube in the center of a male (female) body model). Highest SNR is achieved for the 16-channel configuration with fractionated dipoles. The combination of either fractionated dipoles or microstrip antennas with loop coils is more favorable with regard to the transmit performance compared with only increasing the number of elements.

Performance and safety assessment of an integrated transmit array for body imaging at 7 T under consideration of specific absorption rate, tissue temperature, and thermal dose.

In this study, the performance of an integrated body-imaging array for 7 T with 32 radiofrequency (RF) channels under consideration of local specific absorption rate (SAR), tissue temperature, and thermal dose limits was evaluated and the imaging performance was compared with a clinical 3 T body coil. Thirty-two transmit elements were placed in three rings between the bore liner and RF shield of the gradient coil. Slice-selective RF pulse optimizations for B1 shimming and spokes were performed for differently oriented slices in the body under consideration of realistic constraints for power and local SAR. To improve the B1+ homogeneity, safety assessments based on temperature and thermal dose were performed to possibly allow for higher input power for the pulse optimization than permissible with SAR limits. The results showed that using two spokes, the 7 T array outperformed the 3 T birdcage in all the considered regions of interest. However, a significantly higher SAR or lower duty cycle at 7 T is necessary in some cases to achieve similar B1+ homogeneity as at 3 T. The homogeneity in up to 50 cm-long coronal slices can particularly benefit from the high RF shim performance provided by the 32 RF channels. The thermal dose approach increases the allowable input power and the corresponding local SAR, in one example up to 100 W/kg, without limiting the exposure time necessary for an MR examination. In conclusion, the integrated antenna array at 7 T enables a clinical workflow for body imaging and comparable imaging performance to a conventional 3 T clinical body coil.

Post-processing algorithms for specific absorption rate compression.

PURPOSE: Compression of local specific absorption rate (SAR) matrices is essential for enabling SAR monitoring and efficient pulse calculation in parallel transmission. Improvements in compression result in lower error margin and/or lower number of virtual observation points (VOPs). The purpose of this work is to introduce two algorithms for post-processing of already compressed VOP sets. One calculates individual overestimation matrices for the VOPs to reduce overestimation, the other identifies redundant VOPs. METHODS: The first algorithm was evaluated for VOP sets calculated for three different transmit arrays with either 8 or 16 channels. For each array, two different overestimation matrices were used to generate the VOP sets. Each post-processed VOP set was evaluated using one million random excitation vectors and the results compared to the VOP set before post-processing. The second algorithm was evaluated by utilizing the same random excitation vectors and comparing the results after removal of the redundant VOPs with the results before removal to verify that these were identical. RESULTS: The first algorithm reduced the mean overestimation by up to four fifths compared to the original set, while keeping the number of VOPs constant. The second algorithm decreased the number of VOPs generated by a compression with Eichfelder and Gebhardt's algorithm by more than 40% in 40% of the investigated cases and by more than 20% in 73% of the investigated cases. CONCLUSION: Two post-processing algorithms are presented that enhance previously compressed VOP sets by improving the accuracy per number of VOPs.

Local SAR compression algorithm with improved compression, speed, and flexibility.

PURPOSE: Local specific absorption rate (SAR) compression algorithms are essential for enabling online SAR monitoring in parallel transmission. A better compression resulting in a lower number of virtual observation points improves speed of SAR calculation for online supervision and pulse design. METHOD: An iterative expansion of an existing algorithm presented by Lee et al is proposed in this work. The original algorithm is used within a loop, making use of the virtual observation points from the previous iteration as the starting subvolume, while decreasing the overestimation with each iteration. This algorithm is evaluated on the SAR matrices of three different simulated arrays. RESULT: The number of virtual observation points is approximately halved with the new algorithm, while at the same time the compression time is reduced with speed-up factors of up to 2.5. CONCLUSION: The new algorithm improves the original algorithm in terms of compression rate and speed.

Performance analysis of integrated RF microstrip transmit antenna arrays with high channel count for body imaging at 7 T.

The aim of the current study was to investigate the performance of integrated RF transmit arrays with high channel count consisting of meander microstrip antennas for body imaging at 7 T and to optimize the position and number of transmit elements. RF simulations using multiring antenna arrays placed behind the bore liner were performed for realistic exposure conditions for body imaging. Simulations were performed for arrays with as few as eight elements and for arrays with high channel counts of up to 48 elements. The B1+ field was evaluated regarding the degrees of freedom for RF shimming in the abdomen. Worst-case specific absorption rate (SARwc ), SAR overestimation in the matrix compression, the number of virtual observation points (VOPs) and SAR efficiency were evaluated. Constrained RF shimming was performed in differently oriented regions of interest in the body, and the deviation from a target B1+ field was evaluated. Results show that integrated multiring arrays are able to generate homogeneous B1+ field distributions for large FOVs, especially for coronal/sagittal slices, and thus enable body imaging at 7 T with a clinical workflow; however, a low duty cycle or a high SAR is required to achieve homogeneous B1+ distributions and to exploit the full potential. In conclusion, integrated arrays allow for high element counts that have high degrees of freedom for the pulse optimization but also produce high SARwc , which reduces the SAR accuracy in the VOP compression for low-SAR protocols, leading to a potential reduction in array performance. Smaller SAR overestimations can increase SAR accuracy, but lead to a high number of VOPs, which increases the computational cost for VOP evaluation and makes online SAR monitoring or pulse optimization challenging. Arrays with interleaved rings showed the best results in the study.

Local SAR compression with overestimation control to reduce maximum relative SAR overestimation and improve multi-channel RF array performance.

OBJECTIVE: In local SAR compression algorithms, the overestimation is generally not linearly dependent on actual local SAR. This can lead to large relative overestimation at low actual SAR values, unnecessarily constraining transmit array performance. METHOD: Two strategies are proposed to reduce maximum relative overestimation for a given number of VOPs. The first strategy uses an overestimation matrix that roughly approximates actual local SAR; the second strategy uses a small set of pre-calculated VOPs as the overestimation term for the compression. RESULT: Comparison with a previous method shows that for a given maximum relative overestimation the number of VOPs can be reduced by around 20% at the cost of a higher absolute overestimation at high actual local SAR values. CONCLUSION: The proposed strategies outperform a previously published strategy and can improve the SAR compression where maximum relative overestimation constrains the performance of parallel transmission.

Interactome and F-Actin Interaction Analysis of Dictyostelium discoideum Coronin A.

Coronin proteins are evolutionary conserved WD repeat containing proteins that have been proposed to carry out different functions. In Dictyostelium, the short coronin isoform, coronin A, has been implicated in cytoskeletal reorganization, chemotaxis, phagocytosis and the initiation of multicellular development. Generally thought of as modulators of F-actin, coronin A and its mammalian homologs have also been shown to mediate cellular processes in an F-actin-independent manner. Therefore, it remains unclear whether or not coronin A carries out its functions through its capacity to interact with F-actin. Moreover, the interacting partners of coronin A are not known. Here, we analyzed the interactome of coronin A as well as its interaction with F-actin within cells and in vitro. Interactome analysis showed the association with a diverse set of interaction partners, including fimbrin, talin and myosin subunits, with only a transient interaction with the minor actin10 isoform, but not the major form of actin, actin8, which was consistent with the absence of a coronin A-actin interaction as analyzed by co-sedimentation from cells and lysates. In vitro, however, purified coronin A co-precipitated with rabbit muscle F-actin in a coiled-coil-dependent manner. Our results suggest that an in vitro interaction of coronin A and rabbit muscle actin may not reflect the cellular interaction state of coronin A with actin, and that coronin A interacts with diverse proteins in a time-dependent manner.

SAR Simulations & Safety.

At ultra-high fields, the assessment of radiofrequency (RF) safety presents several new challenges compared to low-field systems. Multi-channel RF transmit coils in combination with parallel transmit techniques produce time-dependent and spatially varying power loss densities in the tissue. Further, in ultra-high-field systems, localized field effects can be more pronounced due to a transition from the quasi stationary to the electromagnetic field regime. Consequently, local information on the RF field is required for reliable RF safety assessment as well as for monitoring of RF exposure during MR examinations. Numerical RF and thermal simulations for realistic exposure scenarios with anatomical body models are currently the only practical way to obtain the requisite local information on magnetic and electric field distributions as well as tissue temperature. In this article, safety regulations and the fundamental characteristics of RF field distributions in ultra-high-field systems are reviewed. Numerical methods for computation of RF fields as well as typical requirements for the analysis of realistic multi-channel RF exposure scenarios including anatomical body models are highlighted. In recent years, computation of the local tissue temperature has become of increasing interest, since a more accurate safety assessment is expected because temperature is directly related to tissue damage. Regarding thermal simulation, bio-heat transfer models and approaches for taking into account the physiological response of the human body to RF exposure are discussed. In addition, suitable methods are presented to validate calculated RF and thermal results with measurements. Finally, the concept of generalized simulation-based specific absorption rate (SAR) matrix models is discussed. These models can be incorporated into local SAR monitoring in multi-channel MR systems and allow the design of RF pulses under constraints for local SAR.

Fast and accurate multi-channel B1+ mapping based on the TIAMO technique for 7T UHF body MRI.

PURPOSE: Current methods for mitigation of transmit field B1+ inhomogeneities at ultrahigh field (UHF) MRI by multi-channel radiofrequency (RF) shimming rely on accurate B1+ mapping. This can be time consuming when many RF channels have to be mapped for in vivo body MRI, where the B1 maps should ideally be acquired within a single breath-hold. Therefore, a new B1+ mapping technique (B1TIAMO) is proposed. METHODS: The performance of this technique is validated against an established method (DREAM) in phantom measurements for a cylindrical head phantom with an 8-channel transmit/receive (Tx/Rx) array. Furthermore, measurements for a 32-channel Tx/Rx remote array are conducted in a large body phantom and the |B1+| map reliability is validated against simulations of the transmit RF field distribution. Finally, in vivo results of this new mapping technique for human abdomen are presented. RESULTS: For the head phantom (8-channel Tx/Rx coil), the single |B1+| comparison between B1 TIAMO, the direct DREAM measurements, and simulation data showed good agreement with 10-19% difference. For the large body phantom (32-channel Tx/Rx coil), B1TIAMO matched the RF field simulations well. CONCLUSION: The results demonstrate the potential to acquire 32 accurate single-channel B1+ maps for large field-of-view body imaging within only a single breath-hold of 16 s at 7T UHF MRI. Magn Reson Med 79:2652-2664, 2018. © 2017 International Society for Magnetic Resonance in Medicine.

Improved T*2 determination in 23Na, 35Cl, and 17O MRI using iterative partial volume correction based on 1H MRI segmentation.

OBJECTIVE: Functional parameters can be measured with the help of quantitative non-proton MRI where exact relaxometry parameters are needed. Investigation of [Formula: see text] is often biased by strong partial volume (PV) effects. Hence, in this work a PV correction algorithm approach was evaluated that uses iteratively adapted [Formula: see text]-values and high-resolution structural 1H data to determine transverse relaxation in non-proton MRI more accurately. MATERIALS AND METHODS: Simulations, a phantom study and in vivo 23Na, 17O and 35Cl MRI measurements of five healthy volunteers were performed to evaluate the algorithm. [Formula: see text] values of grey matter (GM), white matter (WM) and cerebrospinal fluid (CSF) were obtained. Data were acquired at B 0  = 7T with nominal spatial resolutions of (4-7 mm)3 using a density-adapted radial sequence. The resulting transverse relaxation times were used for quantification of 17O data. RESULTS: The conducted simulations and phantom study verified the correction performance of the algorithm. For in vivo measured [Formula: see text] values, the correction of PV effects leads to an increase in CSF and to a decrease in GM/WM (23Na MRI: long/short GM, WM [Formula: see text]: 36.4 ± 3.1/5.4 ± 0.2, 23.3 ± 2.6/3.5 ± 0.1 ms; 35Cl MRI: 8.9 ± 1.4/1.0 ± 0.4, 5.9 ± 0.3/0.4 ± 0.1 ms; 17O MRI: 2.5 ± 0.1, 2.8 ± 0.1 ms). Iteratively corrected in vivo [Formula: see text] values of the 17O study resulted in improved water content quantification. CONCLUSION: The proposed iterative algorithm for PV correction leads to more accurate [Formula: see text] values and, thus, can improve accuracy in quantitative non-proton MRI.

Tumor promotion by exposure to radiofrequency electromagnetic fields below exposure limits for humans.

The vast majority of in vitro and in vivo studies did not find cancerogenic effects of exposure to electromagnetic fields (RF-EMF), i.e. emitted by mobile phones and base stations. Previously published results from a pilot study with carcinogen-treated mice, however, suggested tumor-promoting effects of RF-EMF (Tillmann et al., 2010). We have performed a replication study using higher numbers of animals per group and including two additional exposure levels (0 (sham), 0.04, 0.4 and 2 W/kg SAR). We could confirm and extend the originally reported findings. Numbers of tumors of the lungs and livers in exposed animals were significantly higher than in sham-exposed controls. In addition, lymphomas were also found to be significantly elevated by exposure. A clear dose-response effect is absent. We hypothesize that these tumor-promoting effects may be caused by metabolic changes due to exposure. Since many of the tumor-promoting effects in our study were seen at low to moderate exposure levels (0.04 and 0.4 W/kg SAR), thus well below exposure limits for the users of mobile phones, further studies are warranted to investigate the underlying mechanisms. Our findings may help to understand the repeatedly reported increased incidences of brain tumors in heavy users of mobile phones.

Fibre-Reinforced Composite for Protection against Shark Bites.

The number of shark attacks resulting in fatalities and severe injuries has increased steadily over recent years. This is mainly attributed to a growing population participating in ocean sports such as swimming, diving, and surfing. To mitigate the severity of shark attacks, the current study presents a novel fibre-reinforced composite for bite protection. This material is intended for integration into neoprene wetsuits, e.g., in the form of protective pads. A suitable material must be able to withstand significant bite forces, which are concentrated within a small contact area at the tips of the shark teeth. At the same time, the material should not hinder the complex motion sequences of aquatic sports. To this end, a novel fibre-reinforced composite was created by integrating Kevlar fibres into an elastic matrix. Uni-axial testing using shark teeth replicas was conducted on a specially designed test rig to quantify the effectiveness of the novel protective material.

Homodimerization of coronin A through the C-terminal coiled-coil domain is essential for multicellular differentiation of Dictyostelium discoideum.

Coronin proteins are widely expressed among eukaryotic organisms. Most coronins consist of a WD-repeat domain followed by a C-terminal coiled coil. Dictyostelium discoideum expresses a single short coronin coronin A, which has been implicated in both actin modulation and multicellular differentiation. Whether coronin A's coiled coil is important for functionality, as well as the oligomeric state of coronin A is not known. Here, we show that the coiled-coil domain in Dictyostelium coronin A functions in homodimerization, is dispensable for coronin A stability and localization but essential for multicellular differentiation. These results allow a better understanding of the role for the coiled-coil domain of coronin A in oligomerization and demonstrate that its presence is essential for multicellular differentiation.

Effect of Heat Treatment on the Compressive Behavior of Zinc Alloy ZA27 Syntactic Foam.

Zinc alloy (ZA27) syntactic foams (SF) were manufactured using expanded perlite (EP) particles and counter-gravity infiltration casting. Due to a variation of the metallic matrix content, the density of the produced foam samples varied from 1.78 to 2.03 g·cm-3. As-cast and solution heat-treated samples were tested to investigate the compressive properties of the ZA27 syntactic foam. To this end, quasi-static compression tests were conducted. In addition, microstructural analysis of the as-cast and heat-treated syntactic foams was carried out using scanning electron microscopy. The results indicate that the heat treatment alters the microstructure of the ZA27 alloy matrix from a multiphase dendrite to a spheroidized microstructure with improved ductility. Moreover, the heat treatment considerably enhances the energy absorption and plateau stress ( σ pl ) of the syntactic foam. Optical analysis of the syntactic foams under compression shows that the dominant deformation mechanism of the as-cast foams is brittle fracture. In comparison, the heat-treated samples undergo a more ductile deformation.

A 32-channel parallel transmit system add-on for 7T MRI.

PURPOSE: A 32-channel parallel transmit (pTx) add-on for 7 Tesla whole-body imaging is presented. First results are shown for phantom and in-vivo imaging. METHODS: The add-on system consists of a large number of hardware components, including modulators, amplifiers, SAR supervision, peripheral devices, a control computer, and an integrated 32-channel transmit/receive body array. B1+ maps in a phantom as well as B1+ maps and structural images in large volunteers are acquired to demonstrate the functionality of the system. EM simulations are used to ensure safe operation. RESULTS: Good agreement between simulation and experiment is shown. Phantom and in-vivo acquisitions show a field of view of up to 50 cm in z-direction. Selective excitation with 100 kHz sampling rate is possible. The add-on system does not affect the quality of the original single-channel system. CONCLUSION: The presented 32-channel parallel transmit system shows promising performance for ultra-high field whole-body imaging.

No association of the CARD8 (TUCAN) c.30T>A (p.C10X) variant with Crohn's disease: a study in 3 independent European cohorts.

BACKGROUND: A recent study reported that the c.30T>A (p.Cys10Ter; rs2043211) variant, in the CARD8 (TUCAN) gene, is associated with Crohn's disease (CD). The aim of this study was to analyze the frequency of p.C10X in 3 independent European (IBD) cohorts from Germany, Hungary, and the Netherlands. METHODS: We included a European IBD cohort of 921 patients and compared the p.C10X genotype frequency to 832 healthy controls. The 3 study populations analyzed were: (1) Germany [CD, n = 317; ulcerative colitis (UC), n = 180], (2) Hungary (CD, n = 149; UC, n = 119), and (3) the Netherlands (CD, n = 156). Subtyping analysis was performed in respect to NOD2 variants (p.Arg702Trp, p.Gly908Arg, c.3020insC) and to clinical characteristics. Ethnically matched controls were included (German, n = 413; Hungarian, n = 202; Dutch, n = 217). RESULTS: We observed no significant difference in p.C10X genotype frequency in either patients with CD or patients with UC compared with controls in all 3 cohorts. Conversely to the initial association study, we found a trend toward lower frequencies of the suggestive risk wild type in CD from the Netherlands compared with controls (P = 0.14). We found neither evidence for genetic interactions between p.C10X and NOD2 nor the C10X variant to be associated with a CD or UC phenotype. CONCLUSIONS: Analyzing 3 independent European IBD cohorts, we found no evidence that the C10X variant in CARD8 confers susceptibility for CD.

jPREdictor: a versatile tool for the prediction of cis-regulatory elements.

Gene regulation is the process through which an organism effects spatial and temporal differences in gene expression levels. Knowledge of cis-regulatory elements as key players in gene regulation is indispensable for the understanding of the latter and of the development of organisms. Here we present the tool jPREdictor for the fast and versatile prediction of cis-regulatory elements on a genome-wide scale. The prediction is based on clusters of individual motifs and any combination of these into multi-motifs with selectable minimal and maximal distances. Individual motifs can be of heterogenous classes, such as simple sequence motifs or position-specific scoring matrices. Cluster scores are weighted occurrences of multi-motifs, where the weights are derived from positive and negative training sets. We illustrate the flexibility of the jPREdictor with a new predic-tion of Polycomb/Trithorax Response Elements in Drosophila melanogaster. jPREdictor is available as a graphical user interface for online use and for download at http://bibiserv.techfak.uni-bielefeld.de/jpredictor.

Mechanical and Microstructural Characterization of an AZ91⁻Activated Carbon Syntactic Foam.

In this study, activated carbon (AC) particles were combined with AZ91 alloy to manufacture a magnesium syntactic foam. This novel lightweight foam has a very low density, in the range of 1.12⁻1.18 gcm-3. The results show that no chemical reaction occurred between the AZ91 matrix and the activated carbon particles. The mechanical properties of the foam were evaluated under quasi-static compression loading conditions, and showed a consistent trend for the energy absorption of the fabricated AZ91⁻AC syntactic foams. The deformation mechanism of samples was a brittle fracture mode with the formation of shear bands during the fracture of all samples.