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1.
PLoS Pathog ; 19(8): e1011563, 2023 08.
Artículo en Inglés | MEDLINE | ID: mdl-37585473

RESUMEN

Trichomonas vaginalis is a human protozoan parasite that causes trichomoniasis, a prevalent sexually transmitted infection. Trichomoniasis is accompanied by a shift to a dysbiotic vaginal microbiome that is depleted of lactobacilli. Studies on co-cultures have shown that vaginal bacteria in eubiosis (e.g. Lactobacillus gasseri) have antagonistic effects on T. vaginalis pathogenesis, suggesting that the parasite might benefit from shaping the microbiome to dysbiosis (e.g. Gardnerella vaginalis among other anaerobes). We have recently shown that T. vaginalis has acquired NlpC/P60 genes from bacteria, expanding them to a repertoire of nine TvNlpC genes in two distinct clans, and that TvNlpCs of clan A are active against bacterial peptidoglycan. Here, we expand this characterization to TvNlpCs of clan B. In this study, we show that the clan organisation of NlpC/P60 genes is a feature of other species of Trichomonas, and that Histomonas meleagridis has sequences related to one clan. We characterized the 3D structure of TvNlpC_B3 alone and with the inhibitor E64 bound, probing the active site of these enzymes for the first time. Lastly, we demonstrated that TvNlpC_B3 and TvNlpC_B5 have complementary activities with the previously described TvNlpCs of clan A and that exogenous expression of these enzymes empower this mucosal parasite to take over populations of vaginal lactobacilli in mixed cultures. TvNlpC_B3 helps control populations of L. gasseri, but not of G. vaginalis, which action is partially inhibited by E64. This study is one of the first to show how enzymes produced by a mucosal protozoan parasite may contribute to a shift on the status of a microbiome, helping explain the link between trichomoniasis and vaginal dysbiosis. Further understanding of this process might have significant implications for treatments in the future.


Asunto(s)
Tricomoniasis , Vaginitis por Trichomonas , Trichomonas vaginalis , Femenino , Humanos , Trichomonas vaginalis/genética , Lactobacillus/genética , Peptidoglicano , N-Acetil Muramoil-L-Alanina Amidasa , Disbiosis , Bacterias
2.
Chemistry ; 30(28): e202400268, 2024 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-38472116

RESUMEN

Modern approaches in metallodrug research focus on compounds that bind protein targets rather than DNA. However, the identification of protein targets and binding sites is challenging. Using intact mass spectrometry and proteomics, we investigated the binding of the antimetastatic agent RAPTA-C to the model proteins ubiquitin, cytochrome c, lysozyme, and myoglobin. Binding to cytochrome c and lysozyme was negligible. However, ubiquitin bound up to three Ru moieties, two of which were localized at Met1 and His68 as [Ru(cym)], and [Ru(cym)] or [Ru(cym)(PTA)] adducts, respectively. Myoglobin bound up to four [Ru(cym)(PTA)] moieties and five sites were identified at His24, His36, His64, His81/82 and His113. Collision-induced unfolding (CIU) studies via ion-mobility mass spectrometry allowed measuring protein folding as a function of collisional activation. CIU of protein-RAPTA-C adducts showed binding of [Ru(cym)] to Met1 caused a significant compaction of ubiquitin, likely from N-terminal S-Ru-N chelation, while binding of [Ru(cym)(PTA)] to His residues of ubiquitin or myoglobin induced a smaller effect. Interestingly, the folded state of ubiquitin formed by His functionalization was more stable than Met1 metalation. The data suggests that selective metalation of amino acids at different positions on the protein impacts the conformation and potentially the biological activity of anticancer compounds.


Asunto(s)
Citocromos c , Muramidasa , Mioglobina , Pliegue de Proteína , Ubiquitina , Ubiquitina/química , Ubiquitina/metabolismo , Mioglobina/química , Mioglobina/metabolismo , Sitios de Unión , Citocromos c/química , Citocromos c/metabolismo , Muramidasa/química , Muramidasa/metabolismo , Unión Proteica , Rutenio/química , Complejos de Coordinación/química , Complejos de Coordinación/metabolismo
3.
Plant J ; 112(4): 1029-1050, 2022 11.
Artículo en Inglés | MEDLINE | ID: mdl-36178149

RESUMEN

Flowering of the reference legume Medicago truncatula is promoted by winter cold (vernalization) followed by long-day photoperiods (VLD) similar to winter annual Arabidopsis. However, Medicago lacks FLC and CO, key regulators of Arabidopsis VLD flowering. Most plants have two INHIBITOR OF GROWTH (ING) genes (ING1 and ING2), encoding proteins with an ING domain with two anti-parallel alpha-helices and a plant homeodomain (PHD) finger, but their genetic role has not been previously described. In Medicago, Mting1 gene-edited mutants developed and flowered normally, but an Mting2-1 Tnt1 insertion mutant and gene-edited Mting2 mutants had developmental abnormalities including delayed flowering particularly in VLD, compact architecture, abnormal leaves with extra leaflets but no trichomes, and smaller seeds and barrels. Mting2 mutants had reduced expression of activators of flowering, including the FT-like gene MtFTa1, and increased expression of the candidate repressor MtTFL1c, consistent with the delayed flowering of the mutant. MtING2 overexpression complemented Mting2-1, but did not accelerate flowering in wild type. The MtING2 PHD finger bound H3K4me2/3 peptides weakly in vitro, but analysis of gene-edited mutants indicated that it was dispensable to MtING2 function in wild-type plants. RNA sequencing experiments indicated that >7000 genes are mis-expressed in the Mting2-1 mutant, consistent with its strong mutant phenotypes. Interestingly, ChIP-seq analysis identified >5000 novel H3K4me3 locations in the genome of Mting2-1 mutants compared to wild type R108. Overall, our mutant study has uncovered an important physiological role of a plant ING2 gene in development, flowering, and gene expression, which likely involves an epigenetic mechanism.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Medicago truncatula , Arabidopsis/genética , Arabidopsis/metabolismo , Proteínas de Homeodominio/genética , Proteínas de Plantas/metabolismo , Dedos de Zinc PHD , Flores , Medicago truncatula/genética , Medicago truncatula/metabolismo , Expresión Génica , Regulación de la Expresión Génica de las Plantas/genética , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Proteínas de Dominio MADS/genética
4.
Inorg Chem ; 60(4): 2414-2424, 2021 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-33497565

RESUMEN

The development of bifunctional platinum complexes with the ability to interact with DNA via different binding modes is of interest in anticancer metallodrug research. Therefore, we report platinum(II) terpyridine complexes to target DNA by coordination and/or through a tethered alkylating moiety. The platinum complexes were evaluated for their in vitro antiproliferative properties against the human cancer cell lines HCT116 (colorectal), SW480 (colon), NCI-H460 (non-small cell lung), and SiHa (cervix) and generally exhibited potent antiproliferative activity although lower than their respective terpyridine ligands. 1H NMR spectroscopy and/or ESI-MS studies on the aqueous stability and reactivity with various small biomolecules, acting as protein and DNA model compounds, were used to establish potential modes of action for these complexes. These investigations indicated rapid binding of complex PtL3 to the biomolecules through coordination to the Pt center, while PtL4 in addition alkylated 9-ethylguanine. PtL3 was investigated for its reactivity to the model protein hen egg white lysozyme (HEWL) by protein crystallography which allowed identification of the Nδ1 atom of His15 as the binding site.


Asunto(s)
Antineoplásicos/farmacología , Complejos de Coordinación/farmacología , ADN/química , Compuestos de Mostaza/química , Compuestos de Platino/química , Piridinas/química , Alquilación , Antineoplásicos/química , Sitios de Unión , Línea Celular Tumoral , Complejos de Coordinación/química , Complejos de Coordinación/metabolismo , Humanos , Ligandos , Muramidasa/metabolismo , Análisis Espectral/métodos
5.
Inorg Chem ; 60(19): 14636-14644, 2021 Oct 04.
Artículo en Inglés | MEDLINE | ID: mdl-34528438

RESUMEN

N-Heterocyclic carbene (NHC) ligands are widely investigated in medicinal inorganic chemistry. Here, we report the preparation and characterization of a series of half-sandwich [M(L)(NHC)Cl2] (M = Ru, Os, Rh, Ir; L = cym/Cp*) complexes with a N-flanking anthracenyl moiety attached to imidazole- and benzimidazole-derived NHC ligands. The anticancer activity of the complexes was investigated in cell culture studies where, in comparison to a Rh derivative with an all-carbon-donor-atom-based ligand (5a), they were found to be cytotoxic with IC50 values in the low micromolar range. The Ru derivative 1a was chosen as a representative for stability studies as well as for biomolecule interaction experiments. It underwent partial chlorido/aqua ligand exchange in DMSO-d6/D2O to rapidly form an equilibrium in aqueous media. The reactions of 1a with biomolecules proceeded quickly and resulted in the formation of adducts with amino acids, DNA, and protein. Hen egg white lysozyme crystals were soaked with 1a, and the crystallographic analysis revealed an interaction with an l-aspartic acid residue (Asp119), resulting in the cleavage of the p-cymene ligand but the retention of the NHC moiety. Cell morphology studies for the Rh analog 3a suggested that the cytotoxicity is exerted via mechanisms different from that of cisplatin.


Asunto(s)
Antineoplásicos/farmacología , Complejos de Coordinación/farmacología , Metano/análogos & derivados , Antineoplásicos/síntesis química , Antineoplásicos/química , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Complejos de Coordinación/síntesis química , Complejos de Coordinación/química , Ensayos de Selección de Medicamentos Antitumorales , Humanos , Metano/química , Metano/farmacología
6.
Angew Chem Int Ed Engl ; 60(36): 19928-19932, 2021 09 01.
Artículo en Inglés | MEDLINE | ID: mdl-34196088

RESUMEN

Metal complexes can be considered a "paradigm of promiscuity" when it comes to their interactions with proteins. They often form adducts with a variety of donor atoms in an unselective manner. We have characterized the adducts formed between a series of isostructural N-heterocyclic carbene (NHC) complexes with Ru, Os, Rh, and Ir centers and the model protein hen egg white lysozyme by X-ray crystallography and mass spectrometry. Distinctive behavior for the metal compounds was observed with the more labile Ru and Rh complexes targeting mainly a surface l-histidine moiety through cleavage of p-cymene or NHC co-ligands, respectively. In contrast, the more inert Os and Ir derivatives were detected abundantly in an electronegative binding pocket after undergoing ligand exchange of a chlorido ligand for an amino acid side chain. Computational studies supported the binding profiles and hinted at the role of the protein microenvironment for metal complexes eliciting selectivity for specific binding sites on the protein.

7.
Inorg Chem ; 59(23): 17191-17199, 2020 Dec 07.
Artículo en Inglés | MEDLINE | ID: mdl-33180473

RESUMEN

While most Rh-N-heterocyclic carbene (NHC) complexes currently investigated in anticancer research contain a Rh(III) metal center, an increasing amount of research is focusing on the cytotoxic activity and mode of action of square-planar [RhCl(COD)(NHC)] (where COD = 1,5-cyclooctadiene) which contains a Rh(I) center. The enzyme thioredoxin reductase (TrxR) and the protein albumin have been proposed as potential targets, but the molecular processes taking place upon protein interaction remain elusive. Herein, we report the preparation of peptide-conjugated and its nonconjugated parent [RhCl(COD)(NHC)] complexes, an in-depth investigation of both their stability in solution, and a crystallographic study of protein interaction. The organorhodium compounds showed a rapid loss of the COD ligand and slow loss of the NHC ligand in aqueous solution. These ligand exchange reactions were reflected in studies on the interaction with hen egg white lysozyme (HEWL) as a model protein in single-crystal X-ray crystallographic investigations. Upon treatment of HEWL with an amino acid functionalized [RhCl(COD)(NHC)] complex, two distinct rhodium adducts were found initially after 7 d of incubation at His15 and after 4 weeks also at Lys33. In both cases, the COD and chlorido ligands had been substituted with aqua and/or hydroxido ligands. While the histidine (His) adduct also indicated a loss of the NHC ligand, the lysine (Lys) adduct retained the NHC core derived from the amino acid l-histidine. In either case, an octahedral coordination environment of the metal center indicates oxidation to Rh(III). This investigation gives the first insight on the interaction of Rh(I)(NHC) complexes and proteins at the molecular level.


Asunto(s)
Complejos de Coordinación/química , Compuestos Heterocíclicos/química , Metano/análogos & derivados , Muramidasa/química , Rodio/química , Complejos de Coordinación/síntesis química , Cristalografía por Rayos X , Metano/química , Modelos Moleculares , Estructura Molecular , Muramidasa/metabolismo
8.
Inorg Chem ; 59(5): 3281-3289, 2020 Mar 02.
Artículo en Inglés | MEDLINE | ID: mdl-32073260

RESUMEN

Metal complexes provide a versatile platform to develop novel anticancer pharmacophores, and they form stable compounds with N-heterocyclic carbene (NHC) ligands, some of which have been shown to inhibit the cancer-related selenoenzyme thioredoxin reductase (TrxR). To expand a library of isostructural NHC complexes, we report here the preparation of RhIII- and IrIII(Cp*)(NHC)Cl2 (Cp* = η5-pentamethylcyclopentadienyl) compounds and comparison of their properties to the RuII- and OsII(cym) analogues (cym = η6-p-cymene). Like the RuII- and OsII(cym) complexes, the RhIII- and IrIII(Cp*) derivatives exhibit cytotoxic activity with half maximal inhibitory concentration (IC50) values in the low micromolar range against a set of four human cancer cell lines. In studies on the uptake and localization of the compounds in cancer cells by X-ray fluorescence microscopy, the Ru and Os derivatives were shown to accumulate in the cytoplasmic region of treated cells. In an attempt to tie the localization of the compounds to the inhibition of the tentative target TrxR, it was surprisingly found that only the Rh complexes showed significant inhibitory activity at IC50 values of ∼1 µM, independent of the substituents on the NHC ligand. This indicates that, although TrxR may be a potential target for anticancer metal complexes, it is unlikely the main target or the sole target for the Ru, Os, and Ir compounds described here, and other targets should be considered. In contrast, Rh(Cp*)(NHC)Cl2 complexes may be a scaffold for the development of TrxR inhibitors.


Asunto(s)
Antineoplásicos/farmacología , Complejos de Coordinación/farmacología , Inhibidores Enzimáticos/farmacología , Reductasa de Tiorredoxina-Disulfuro/antagonistas & inhibidores , Antineoplásicos/síntesis química , Antineoplásicos/química , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Complejos de Coordinación/síntesis química , Complejos de Coordinación/química , Relación Dosis-Respuesta a Droga , Ensayos de Selección de Medicamentos Antitumorales , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Compuestos Heterocíclicos/química , Compuestos Heterocíclicos/farmacología , Humanos , Ligandos , Metales Pesados/química , Metales Pesados/farmacología , Metano/análogos & derivados , Metano/química , Metano/farmacología , Conformación Molecular , Relación Estructura-Actividad , Reductasa de Tiorredoxina-Disulfuro/metabolismo
9.
J Biol Chem ; 293(16): 5806-5807, 2018 04 20.
Artículo en Inglés | MEDLINE | ID: mdl-29678889

RESUMEN

Aerobic life brings with it a need to respond to external redox stress in ways that preserve key processes. Suppressor of copper sensitivity (Scs) proteins contribute to this response in some bacteria, but have poorly defined molecular functions. Furlong et al. now demonstrate that two Scs proteins from Proteus mirabilis provide a redox relay functionally equivalent to, but structurally distinct from, the Dsb proteins that orchestrate disulfide bonding in Escherichia coli, emphasizing the wide prevalence of this mechanism in bacteria.


Asunto(s)
Proteínas Bacterianas/metabolismo , Cobre/metabolismo , Disulfuros/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/metabolismo , Oxidorreductasas/metabolismo , Proteus mirabilis/metabolismo , Estrés Fisiológico , Bacterias/metabolismo , Proteínas Bacterianas/química , Disulfuros/química , Escherichia coli/química , Proteínas de Escherichia coli/química , Modelos Moleculares , Oxidación-Reducción , Oxidorreductasas/química , Proteus mirabilis/química
10.
J Biol Chem ; 293(47): 18378-18386, 2018 11 23.
Artículo en Inglés | MEDLINE | ID: mdl-30282803

RESUMEN

The retroviral restriction factor tripartite motif-containing 5α (Trim5α) acts during the early postentry stages of the retroviral life cycle to block infection by a broad range of retroviruses, disrupting reverse transcription and integration. The mechanism of this restriction is poorly understood, but it has recently been suggested to involve recruitment of components of the autophagy machinery, including members of the mammalian autophagy-related 8 (ATG8) family involved in targeting proteins to the autophagosome. To better understand the molecular details of this interaction, here we utilized analytical ultracentrifugation to characterize the binding of six ATG8 isoforms and determined the crystal structure of the Trim5α Bbox coiled-coil region in complex with one member of the mammalian ATG8 proteins, autophagy-related protein LC3 B (LC3B). We found that Trim5α binds all mammalian ATG8s and that, unlike the typical LC3-interacting region (LIR) that binds to mammalian ATG8s through a ß-strand motif comprising approximately six residues, LC3B binds to Trim5α via the α-helical coiled-coil region. The orientation of the structure demonstrated that LC3B could be accommodated within a Trim5α assembly that can bind the retroviral capsid. However, mutation of the binding interface does not affect retroviral restriction. Comparison of the typical linear ß-strand LIR with our atypical helical LIR reveals a conservation of the presentation of residues that are required for the interaction with LC3B. This observation expands the range of LC3B-binding proteins to include helical binding motifs and demonstrates a link between Trim5α and components of the autophagosome.


Asunto(s)
Familia de las Proteínas 8 Relacionadas con la Autofagia/metabolismo , Proteínas Portadoras/química , Proteínas Portadoras/metabolismo , Infecciones por VIH/metabolismo , VIH/fisiología , Proteínas Asociadas a Microtúbulos/metabolismo , Secuencias de Aminoácidos , Factores de Restricción Antivirales , Autofagia , Familia de las Proteínas 8 Relacionadas con la Autofagia/química , Familia de las Proteínas 8 Relacionadas con la Autofagia/genética , Proteínas Portadoras/genética , VIH/genética , Infecciones por VIH/genética , Infecciones por VIH/fisiopatología , Infecciones por VIH/virología , Células HeLa , Humanos , Proteínas Asociadas a Microtúbulos/química , Proteínas Asociadas a Microtúbulos/genética , Unión Proteica , Proteínas de Motivos Tripartitos , Ubiquitina-Proteína Ligasas
11.
Electrophoresis ; 40(18-19): 2329-2335, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31087392

RESUMEN

Cisplatin and its second and third generation analogues are widely used in the treatment of cancer. To study their reactions with proteins, we present a method based on SDS-PAGE separation and laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) for platinum detection in the reaction between human serum albumin (HSA) and cisplatin. We developed matrix-matched standards of HSA/cisplatin mixtures and used them to quantify the amount of adducts formed at different HSA:cisplatin ratios. We noted that cisplatin incubation with HSA resulted in the formation of higher order HSA n-mers, depending on the amount of cisplatin added. This caused a depletion of the HSA dimer bands, while the majority of HSA was present as the monomer. Inducing the formation of such higher molecular weight species may have an impact on the mode of action of metallodrugs.


Asunto(s)
Cisplatino/análisis , Cisplatino/metabolismo , Espectrometría de Masas/métodos , Albúmina Sérica Humana/metabolismo , Antineoplásicos/análisis , Antineoplásicos/química , Antineoplásicos/metabolismo , Cisplatino/química , Humanos , Rayos Láser , Albúmina Sérica Humana/química
12.
Biochem J ; 475(1): 137-150, 2018 01 05.
Artículo en Inglés | MEDLINE | ID: mdl-29187521

RESUMEN

Dihydrodipicolinate reductase (DHDPR) catalyses the second reaction in the diaminopimelate pathway of lysine biosynthesis in bacteria and plants. In contrast with the tetrameric bacterial DHDPR enzymes, we show that DHDPR from Vitis vinifera (grape) and Selaginella moellendorffii are dimeric in solution. In the present study, we have also determined the crystal structures of DHDPR enzymes from the plants Arabidopsis thaliana and S. moellendorffii, which are the first dimeric DHDPR structures. The analysis of these models demonstrates that the dimer forms through the intra-strand interface, and that unique secondary features in the plant enzymes block tetramer assembly. In addition, we have also solved the structure of tetrameric DHDPR from the pathogenic bacteria Neisseria meningitidis Measuring the activity of plant DHDPR enzymes showed that they are much more prone to substrate inhibition than the bacterial enzymes, which appears to be a consequence of increased flexibility of the substrate-binding loop and higher affinity for the nucleotide substrate. This higher propensity to substrate inhibition may have consequences for ongoing efforts to increase lysine biosynthesis in plants.


Asunto(s)
Proteínas Bacterianas/química , Dihidrodipicolinato-Reductasa/química , Ácidos Picolínicos/química , Proteínas de Plantas/química , Vitis/enzimología , Secuencias de Aminoácidos , Arabidopsis/química , Arabidopsis/enzimología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Coenzimas/química , Coenzimas/metabolismo , Cristalografía por Rayos X , Dihidrodipicolinato-Reductasa/genética , Dihidrodipicolinato-Reductasa/metabolismo , Expresión Génica , Cinética , Lisina/biosíntesis , Modelos Moleculares , NAD/química , NAD/metabolismo , NADP/química , NADP/metabolismo , Neisseria meningitidis/química , Neisseria meningitidis/enzimología , Ácidos Picolínicos/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Selaginellaceae/química , Selaginellaceae/enzimología , Especificidad de la Especie , Especificidad por Sustrato , Vitis/química
13.
Biochem Biophys Res Commun ; 497(2): 558-563, 2018 03 04.
Artículo en Inglés | MEDLINE | ID: mdl-29438714

RESUMEN

Peroxiredoxins are abundant peroxidase enzymes that are key regulators of the cellular redox environment. A major subgroup of these proteins, the typical 2-Cys peroxiredoxins, can switch between dimers and decameric or dodecameric rings, during the catalytic cycle. The necessity of this change in quaternary structure for function as a peroxidase is not fully understood. In order to explore this, human peroxiredoxin 3 (Prx3) protein was engineered to form both obligate dimers (S75E Prx3) and stabilised dodecameric rings (S78C Prx3), uncoupling structural transformations from the catalytic cycle. The obligate dimer, S75E Prx3, retained catalytic activity towards hydrogen peroxide, albeit significantly lower than the wildtype and S78C proteins, suggesting an evolutionary advantage of having higher order self-assemblies.


Asunto(s)
Peroxiredoxina III/química , Cristalografía por Rayos X , Cisteína/química , Cisteína/genética , Cisteína/metabolismo , Estabilidad de Enzimas , Humanos , Modelos Moleculares , Mutación , Peroxiredoxina III/genética , Peroxiredoxina III/metabolismo , Conformación Proteica , Multimerización de Proteína
14.
PLoS Pathog ; 12(11): e1005981, 2016 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-27829070

RESUMEN

The Spumaretrovirinae, or foamy viruses (FVs) are complex retroviruses that infect many species of monkey and ape. Despite little sequence homology, FV and orthoretroviral Gag proteins perform equivalent functions, including genome packaging, virion assembly, trafficking and membrane targeting. However, there is a paucity of structural information for FVs and it is unclear how disparate FV and orthoretroviral Gag molecules share the same function. To probe the functional overlap of FV and orthoretroviral Gag we have determined the structure of a central region of Gag from the Prototype FV (PFV). The structure comprises two all α-helical domains NtDCEN and CtDCEN that although they have no sequence similarity, we show they share the same core fold as the N- (NtDCA) and C-terminal domains (CtDCA) of archetypal orthoretroviral capsid protein (CA). Moreover, structural comparisons with orthoretroviral CA align PFV NtDCEN and CtDCEN with NtDCA and CtDCA respectively. Further in vitro and functional virological assays reveal that residues making inter-domain NtDCEN-CtDCEN interactions are required for PFV capsid assembly and that intact capsid is required for PFV reverse transcription. These data provide the first information that relates the Gag proteins of Spuma and Orthoretrovirinae and suggests a common ancestor for both lineages containing an ancient CA fold.


Asunto(s)
Proteínas de la Cápside/genética , Productos del Gen gag/química , Productos del Gen gag/genética , Spumavirus/genética , Ensamble de Virus/fisiología , Secuencia de Aminoácidos , Animales , Western Blotting , Cápside , Línea Celular , Humanos , Resonancia Magnética Nuclear Biomolecular , Conformación Proteica , Reacción en Cadena en Tiempo Real de la Polimerasa
15.
PLoS Pathog ; 11(10): e1005194, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26431200

RESUMEN

SAMHD1 restricts HIV-1 infection of myeloid-lineage and resting CD4+ T-cells. Most likely this occurs through deoxynucleoside triphosphate triphosphohydrolase activity that reduces cellular dNTP to a level where reverse transcriptase cannot function, although alternative mechanisms have been proposed recently. Here, we present combined structural and virological data demonstrating that in addition to allosteric activation and triphosphohydrolase activity, restriction correlates with the capacity of SAMHD1 to form "long-lived" enzymatically competent tetramers. Tetramer disruption invariably abolishes restriction but has varied effects on in vitro triphosphohydrolase activity. SAMHD1 phosphorylation also ablates restriction and tetramer formation but without affecting triphosphohydrolase steady-state kinetics. However phospho-SAMHD1 is unable to catalyse dNTP turnover under conditions of nucleotide depletion. Based on our findings we propose a model for phosphorylation-dependent regulation of SAMHD1 activity where dephosphorylation switches housekeeping SAMHD1 found in cycling cells to a high-activity stable tetrameric form that depletes and maintains low levels of dNTPs in differentiated cells.


Asunto(s)
Biocatálisis , VIH-1/patogenicidad , Proteínas de Unión al GTP Monoméricas/metabolismo , Línea Celular , Cromatografía en Gel , Cromatografía Líquida de Alta Presión , Cristalografía por Rayos X , Citometría de Flujo , Humanos , Proteínas de Unión al GTP Monoméricas/química , Fosforilación , Conformación Proteica , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Proteína 1 que Contiene Dominios SAM y HD , Espectrofotometría Atómica
16.
Nature ; 480(7377): 379-82, 2011 Nov 06.
Artículo en Inglés | MEDLINE | ID: mdl-22056990

RESUMEN

SAMHD1, an analogue of the murine interferon (IFN)-γ-induced gene Mg11 (ref. 1), has recently been identified as a human immunodeficiency virus-1 (HIV-1) restriction factor that blocks early-stage virus replication in dendritic and other myeloid cells and is the target of the lentiviral protein Vpx, which can relieve HIV-1 restriction. SAMHD1 is also associated with Aicardi-Goutières syndrome (AGS), an inflammatory encephalopathy characterized by chronic cerebrospinal fluid lymphocytosis and elevated levels of the antiviral cytokine IFN-α. The pathology associated with AGS resembles congenital viral infection, such as transplacentally acquired HIV. Here we show that human SAMHD1 is a potent dGTP-stimulated triphosphohydrolase that converts deoxynucleoside triphosphates to the constituent deoxynucleoside and inorganic triphosphate. The crystal structure of the catalytic core of SAMHD1 reveals that the protein is dimeric and indicates a molecular basis for dGTP stimulation of catalytic activity against dNTPs. We propose that SAMHD1, which is highly expressed in dendritic cells, restricts HIV-1 replication by hydrolysing the majority of cellular dNTPs, thus inhibiting reverse transcription and viral complementary DNA (cDNA) synthesis.


Asunto(s)
VIH-1/fisiología , Proteínas de Unión al GTP Monoméricas/química , Proteínas de Unión al GTP Monoméricas/metabolismo , Nucleósido-Trifosfatasa/química , Nucleósido-Trifosfatasa/metabolismo , Regulación Alostérica , Biocatálisis , Dominio Catalítico , Cristalografía por Rayos X , Células Dendríticas/metabolismo , Células Dendríticas/virología , Nucleótidos de Desoxiadenina/metabolismo , Nucleótidos de Desoxicitosina/metabolismo , Nucleótidos de Desoxiguanina/metabolismo , Humanos , Hidrólisis , Modelos Biológicos , Modelos Moleculares , Proteínas de Unión al GTP Monoméricas/genética , Células Mieloides/virología , Nucleósido-Trifosfatasa/genética , Estructura Terciaria de Proteína , Transcripción Reversa , Proteína 1 que Contiene Dominios SAM y HD , Nucleótidos de Timina/metabolismo , Proteínas Reguladoras y Accesorias Virales/metabolismo , Replicación Viral
17.
Proc Natl Acad Sci U S A ; 111(26): 9609-14, 2014 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-24979782

RESUMEN

Restriction factors (RFs) form important components of host defenses to retroviral infection. The Fv1, Trim5α, and TrimCyp RFs contain N-terminal dimerization and C-terminal specificity domains that target assembled retroviral capsid (CA) proteins enclosing the viral core. However, the molecular detail of the interaction between RFs and their CA targets is unknown. Therefore, we have determined the crystal structure of the B-box and coiled-coil (BCC) region from Trim5α and used small-angle X-ray scattering to examine the solution structure of Trim5α BCC, the dimerization domain of Fv1 (Fv1Ntd), and the hybrid restriction factor Fv1Cyp comprising Fv1NtD fused to the HIV-1 binding protein Cyclophilin A (CypA). These data reveal that coiled-coil regions of Fv1 and Trim5α form extended antiparallel dimers. In Fv1Cyp, two CypA moieties are located at opposing ends, creating a molecule with a dumbbell appearance. In Trim5α, the B-boxes are located at either end of the coiled-coil, held in place by interactions with a helical motif from the L2 region of the opposing monomer. A comparative analysis of Fv1Cyp and CypA binding to a preformed HIV-1 CA lattice reveals how RF dimerization enhances the affinity of interaction through avidity effects. We conclude that the antiparallel organization of the NtD regions of Fv1 and Trim5α dimers correctly positions C-terminal specificity and N-terminal effector domains and facilitates stable binding to adjacent CA hexamers in viral cores.


Asunto(s)
Cápside/metabolismo , VIH-1/metabolismo , Modelos Moleculares , Muramidasa/química , Proteínas/química , Internalización del Virus , Secuencia de Aminoácidos , Animales , Bacteriófago T4/enzimología , Secuencia de Bases , Cromatografía en Gel , Cristalización , Dimerización , Escherichia coli , Modelos Lineales , Macaca mulatta , Microscopía Electrónica , Datos de Secuencia Molecular , Conformación Proteica , Proteínas/genética , Proteínas/metabolismo , Proteínas Recombinantes de Fusión/genética , Dispersión del Ángulo Pequeño , Análisis de Secuencia de ADN , Resonancia por Plasmón de Superficie , Ubiquitina-Proteína Ligasas , Difracción de Rayos X
18.
J Biol Chem ; 290(29): 18111-18123, 2015 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-26060250

RESUMEN

Adiponectin, a collagenous hormone secreted abundantly from adipocytes, possesses potent antidiabetic and anti-inflammatory properties. Mediated by the conserved Cys(39) located in the variable region of the N terminus, the trimeric (low molecular weight (LMW)) adiponectin subunit assembles into different higher order complexes, e.g. hexamers (middle molecular weight (MMW)) and 12-18-mers (high molecular weight (HMW)), the latter being mostly responsible for the insulin-sensitizing activity of adiponectin. The endoplasmic reticulum (ER) chaperone ERp44 retains adiponectin in the early secretory compartment and tightly controls the oxidative state of Cys(39) and the oligomerization of adiponectin. Using cellular and in vitro assays, we show that ERp44 specifically recognizes the LMW and MMW forms but not the HMW form. Our binding assays with short peptide mimetics of adiponectin suggest that ERp44 intercepts and converts the pool of fully oxidized LMW and MMW adiponectin, but not the HMW form, into reduced trimeric precursors. These ERp44-bound precursors in the cis-Golgi may be transported back to the ER and released to enhance the population of adiponectin intermediates with appropriate oxidative state for HMW assembly, thereby underpinning the process of ERp44 quality control.


Asunto(s)
Adiponectina/metabolismo , Retículo Endoplásmico/metabolismo , Proteínas de la Membrana/metabolismo , Chaperonas Moleculares/metabolismo , Adiponectina/química , Secuencia de Aminoácidos , Animales , Células HEK293 , Humanos , Ratones , Datos de Secuencia Molecular , Unión Proteica , Mapas de Interacción de Proteínas , Multimerización de Proteína
19.
Acta Crystallogr D Biol Crystallogr ; 71(Pt 11): 2297-308, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26527146

RESUMEN

The tryptophan-biosynthesis pathway is essential for Mycobacterium tuberculosis (Mtb) to cause disease, but not all of the enzymes that catalyse this pathway in this organism have been identified. The structure and function of the enzyme complex that catalyses the first committed step in the pathway, the anthranilate synthase (AS) complex, have been analysed. It is shown that the open reading frames Rv1609 (trpE) and Rv0013 (trpG) encode the chorismate-utilizing (AS-I) and glutamine amidotransferase (AS-II) subunits of the AS complex, respectively. Biochemical assays show that when these subunits are co-expressed a bifunctional AS complex is obtained. Crystallization trials on Mtb-AS unexpectedly gave crystals containing only AS-I, presumably owing to its selective crystallization from solutions containing a mixture of the AS complex and free AS-I. The three-dimensional structure reveals that Mtb-AS-I dimerizes via an interface that has not previously been seen in AS complexes. As is the case in other bacteria, it is demonstrated that Mtb-AS shows cooperative allosteric inhibition by tryptophan, which can be rationalized based on interactions at this interface. Comparative inhibition studies on Mtb-AS-I and related enzymes highlight the potential for single inhibitory compounds to target multiple chorismate-utilizing enzymes for TB drug discovery.


Asunto(s)
Antranilato Sintasa/antagonistas & inhibidores , Antranilato Sintasa/química , Mycobacterium tuberculosis/enzimología , Triptófano/metabolismo , Tuberculosis/microbiología , Antranilato Sintasa/metabolismo , Vías Biosintéticas , Cristalografía por Rayos X , Diseño de Fármacos , Inhibidores Enzimáticos/farmacología , Humanos , Modelos Moleculares , Mycobacterium tuberculosis/metabolismo , Conformación Proteica , Multimerización de Proteína , Subunidades de Proteína/antagonistas & inhibidores , Subunidades de Proteína/química , Subunidades de Proteína/metabolismo
20.
PLoS Pathog ; 9(5): e1003376, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23675305

RESUMEN

The Spumaretrovirinae, or foamyviruses (FVs) are complex retroviruses that infect many species of monkey and ape. Although FV infection is apparently benign, trans-species zoonosis is commonplace and has resulted in the isolation of the Prototypic Foamy Virus (PFV) from human sources and the potential for germ-line transmission. Despite little sequence homology, FV and orthoretroviral Gag proteins perform equivalent functions, including genome packaging, virion assembly, trafficking and membrane targeting. In addition, PFV Gag interacts with the FV Envelope (Env) protein to facilitate budding of infectious particles. Presently, there is a paucity of structural information with regards FVs and it is unclear how disparate FV and orthoretroviral Gag molecules share the same function. Therefore, in order to probe the functional overlap of FV and orthoretroviral Gag and learn more about FV egress and replication we have undertaken a structural, biophysical and virological study of PFV-Gag. We present the crystal structure of a dimeric amino terminal domain from PFV, Gag-NtD, both free and in complex with the leader peptide of PFV Env. The structure comprises a head domain together with a coiled coil that forms the dimer interface and despite the shared function it is entirely unrelated to either the capsid or matrix of Gag from other retroviruses. Furthermore, we present structural, biochemical and virological data that reveal the molecular details of the essential Gag-Env interaction and in addition we also examine the specificity of Trim5α restriction of PFV. These data provide the first information with regards to FV structural proteins and suggest a model for convergent evolution of gag genes where structurally unrelated molecules have become functionally equivalent.


Asunto(s)
Evolución Biológica , Cápside/metabolismo , Productos del Gen gag/química , Productos del Gen gag/metabolismo , Virus Espumoso de los Simios/metabolismo , Secuencia de Aminoácidos , Cápside/química , Línea Celular , Productos del Gen gag/genética , Humanos , Datos de Secuencia Molecular , Estructura Cuaternaria de Proteína , Estructura Terciaria de Proteína , Virus Espumoso de los Simios/química , Virus Espumoso de los Simios/genética , Transfección
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