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1.
Molecules ; 27(24)2022 Dec 07.
Artículo en Inglés | MEDLINE | ID: mdl-36557780

RESUMEN

Herein, hydrothermal fabrication of CdO-g-C3N4 photocatalyst for a substantially better photocatalytic recital in water splitting is presented. The XRD analysis confirms the cubic phase of CdO-g-C3N4, whereas FTIR and UV-VIS studies revealed the presence of respective groups and a median band gap energy (2.55 eV) of the photocatalyst, respectively, which further enhanced its photo-electrochemical (PEC) properties. The SEM displays the oblong structures of g-C3N4 sheets and nano rod-like morphology of CdO and CdO-g-C3N4, respectively. The HR-TEM exhibits morphology & orientation of the grains and substantiates the polycrystal-line nature of CdO-g-C3N4 nanocomposite. The photocatalytic water-splitting concert is evaluated by PEC experiments under 1 SUN visible light irradiation. Linear sweep voltammetry (LSV), chronoamperometry (CA), and electrochemical impedance spectroscopy (EIS) comprehend the CdO-g-C3N4 as a hydrogen evolution photocatalyst. A photocurrent density beyond ≥5 mA/cm2 is recorded from CdO-g-C3N4, which is 5-6 folds greater than pure CdO and g-C3N4. The efficient separation and transfer of charges allocated to CdO-g-C3N4 and fabricating heterojunctions between g-C3N4 and CdO suppresses the unfavorable electron-hole pairs recombination process. Thus, it recesses charge transfer resistance, augmenting enhanced photocatalytic performance under 1 SUN irradiation.

2.
Analyst ; 146(10): 3317-3327, 2021 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-33999084

RESUMEN

Herein, we report the fabrication of NiO-CoO films for the electrochemical detection of hydrazine. An electrochemical sensor was devised where aerosol assisted chemical vapor deposition (AACVD) was employed as a nifty method for synthesizing NiO-CoO films over FTO electrodes. NiO-CoO-nanoparticle (NP) and NiO-CoO-nanowall (NW) films were fabricated over FTO substrates. The electrocatalytic analysis was performed in a standard three-electrode electrochemical setup. NiO-CoO-NW/FTO showed enhanced electro-oxidation for hydrazine at all concentrations tested. XRD, XPS, EDX, and FE-SEM techniques were used to characterize the structural, morphological, and elemental properties of NiO-CoO films. The results showed improved sensitivity, a large dynamic range, and good long-term stability of NiO-CoO-NW films. The amperometric response was used to measure the detection limit, and it was as low as 0.01 µM, and the sensitivity is ∼33 µA µM-1 cm-2. Besides, the NiO-CoO-NW/FTO electrodes showed significant selectivity towards hydrazine upon testing cross-sensitivity to other common interfering molecules. This strategy of using NiO-CoO-NW/FTO electrodes prepared via AACVD has great potential for the direct determination of hydrazine in environmental sensing applications.

3.
Proteins ; 87(2): 99-109, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30007053

RESUMEN

Ribosome inactivating protein (RIP) catalyzes the cleavage of glycosidic bond formed between adenine and ribose sugar of ribosomal RNA to inactivate ribosomes. Previous structural studies have shown that RNA bases, adenine, guanine, and cytosine tend to bind to RIP in the substrate binding site. However, the mode of binding of uracil with RIP was not yet known. Here, we report crystal structures of two complexes of type 1 RIP from Momordica balsamina (MbRIP1) with base, uracil and nucleoside, uridine. The binding studies of MbRIP1 with uracil and uridine as estimated using fluorescence spectroscopy showed that the equilibrium dissociation constants (KD ) were 1.2 × 10-6 M and 1.4 × 10-7 M respectively. The corresponding values obtained using surface plasmon resonance (SPR) were found to be 1.4 × 10-6 M and 1.1 × 10-7 M, respectively. Structures of the complexes of MbRIP1 with uracil (Structure-1) and uridine (Structure-2) were determined at 1.70 and 1.98 Å resolutions respectively. Structure-1 showed that uracil bound to MbRIP1 at the substrate binding site but its mode of binding was significantly different from those of adenine, guanine and cytosine. However, the mode of binding of uridine was found to be similar to those of cytidine. As a result of binding of uracil to MbRIP1 at the substrate binding site, three water molecules were expelled while eight water molecules were expelled when uridine bound to MbRIP1.


Asunto(s)
Momordica/metabolismo , Proteínas de Plantas/metabolismo , Proteínas Inactivadoras de Ribosomas Tipo 1/metabolismo , Uracilo/química , Uridina/química , Antibacterianos/química , Antibacterianos/metabolismo , Antibacterianos/farmacología , Dominio Catalítico , Cristalografía por Rayos X , Escherichia coli/efectos de los fármacos , Escherichia coli/crecimiento & desarrollo , Modelos Moleculares , Proteínas de Plantas/química , Proteínas de Plantas/farmacología , Unión Proteica , Conformación Proteica , ARN Ribosómico/química , ARN Ribosómico/metabolismo , Proteínas Inactivadoras de Ribosomas Tipo 1/química , Proteínas Inactivadoras de Ribosomas Tipo 1/farmacología , Ribosomas/química , Ribosomas/metabolismo , Resonancia por Plasmón de Superficie , Uracilo/metabolismo , Uracilo/farmacología , Uridina/metabolismo , Uridina/farmacología
4.
Biochem J ; 475(3): 547-560, 2018 02 09.
Artículo en Inglés | MEDLINE | ID: mdl-29301982

RESUMEN

Peptidyl-tRNA hydrolase (Pth) catalyzes the breakdown of peptidyl-tRNA into peptide and tRNA components. Pth from Acinetobacter baumannii (AbPth) was cloned, expressed, purified and crystallized in a native unbound (AbPth-N) state and in a bound state with the phosphate ion and cytosine arabinoside (cytarabine) (AbPth-C). Structures of AbPth-N and AbPth-C were determined at 1.36 and 1.10 Šresolutions, respectively. The structure of AbPth-N showed that the active site is filled with water molecules. In the structure of AbPth-C, a phosphate ion is present in the active site, while cytarabine is bound in a cleft which is located away from the catalytic site. The cytarabine-binding site is formed with residues: Gln19, Trp27, Glu30, Gln31, Lys152, Gln158 and Asp162. In the structure of AbPth-N, the side chains of two active-site residues, Asn70 and Asn116, were observed in two conformations. Upon binding of the phosphate ion in the active site, the side chains of both residues were ordered to single conformations. Since Trp27 is present at the cytarabine-binding site, the fluorescence studies were carried out which gave a dissociation constant (KD) of 3.3 ± 0.8 × 10-7 M for cytarabine. The binding studies using surface plasmon resonance gave a KD value of 3.7 ± 0.7 × 10-7 M. The bacterial inhibition studies using the agar diffusion method and the biofilm inhibition assay established the strong antimicrobial potential of cytarabine. It also indicated that cytarabine inhibited Gram-negative bacteria more profoundly when compared with Gram-positive bacteria in a dose-dependent manner. Cytarabine was also effective against the drug-resistant bacteria both alone as well as in combination with other antibiotics.


Asunto(s)
Acinetobacter baumannii/enzimología , Biopelículas/efectos de los fármacos , Hidrolasas de Éster Carboxílico/química , Hidrolasas de Éster Carboxílico/genética , Acinetobacter baumannii/química , Acinetobacter baumannii/genética , Antibacterianos/química , Antibacterianos/farmacología , Sitios de Unión , Hidrolasas de Éster Carboxílico/farmacología , Catálisis , Dominio Catalítico , Cristalografía por Rayos X , Citarabina/química , Escherichia coli/genética , Dominios Proteicos , ARN de Transferencia/química , ARN de Transferencia/genética , Aminoacil-ARN de Transferencia/genética , Especificidad por Sustrato , Propiedades de Superficie
5.
Proteins ; 85(10): 1882-1890, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28653416

RESUMEN

Lactoperoxidase (LPO) belongs to mammalian heme peroxidase superfamily, which also includes myeloperoxidase (MPO), eosinophil peroxidase (EPO), and thyroid peroxidase (TPO). LPO catalyzes the oxidation of a number of substrates including thiocyanate while TPO catalyzes the biosynthesis of thyroid hormones. LPO is also been shown to catalyze the biosynthesis of thyroid hormones indicating similar functional and structural properties. The binding studies showed that 2-mercaptoimidazole (MZY) bound to LPO with a dissociation constant of 0.63 µM. The inhibition studies showed that the value of IC50 was 17 µM. The crystal structure of the complex of LPO with MZY showed that MZY bound to LPO in the substrate-binding site on the distal heme side. MZY was oriented in the substrate-binding site in such a way that the sulfur atom is at a distance of 2.58 Å from the heme iron. Previously, a similar compound, 3-amino-1,2,4-triazole (amitrole) was also shown to bind to LPO in the substrate-binding site on the distal heme side. The amino nitrogen atom of amitrole occupied the same position as that of sulfur atom in the present structure indicating a similar mode of binding. Recently, the structure of the complex of LPO with a potent antithyroid drug, 1-methylimidazole-2-thiol (methimazole, MMZ) was also determined. It showed that MMZ bound to LPO in the substrate-binding site on the distal heme side with 2 orientations. The position of methyl group was same in the 2 orientations while the positions of sulfur atom differed indicating a higher preference for a methyl group.


Asunto(s)
Etilenotiourea/análogos & derivados , Lactoperoxidasa/química , Hormonas Tiroideas/química , Sitios de Unión , Cristalografía por Rayos X , Etilenotiourea/química , Etilenotiourea/metabolismo , Hemo/química , Hemo/metabolismo , Humanos , Lactoperoxidasa/metabolismo , Metimazol/química , Metimazol/uso terapéutico , Conformación Proteica , Especificidad por Sustrato , Azufre , Glándula Tiroides/química , Glándula Tiroides/enzimología , Hormonas Tiroideas/biosíntesis
6.
Biochim Biophys Acta Proteins Proteom ; 1865(11 Pt A): 1395-1405, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-28844736

RESUMEN

Proliferating cell nuclear antigen (PCNA) acts as a sliding clamp to support DNA replication and repair. The structure of PCNA from Leishmania donovani (LdPCNA) has been determined at 2.73Å resolution. Structure consists of six crystallographically independent molecules which form two trimeric rings. The pore diameter of the individual trimeric ring is of the order of 37Å. The two rings are stacked through their front to front faces. In order to gain a stable packing, the rings are rotated by 42° about the pore axis and shifted by 7Å and tilted by 16° along the perpendicular direction to pore axis. This form of stacking reduced the effective diameter of the pore to 32Å. The sequence of LdPCNA consists of a long segment of 41 amino acid residues (186-Gly-Val-Ser-Asp-Arg-Ser-Thr-Lys-Ser-Glu-Val-Lys-Ala-Glu-Val-Lys-Ala-Glu-Ala-Arg-Asp-Asp-Asp-Glu-Glu-Pro-Leu-Ser-Arg-Lys-Tyr-Gly-Lys-Ala-Asp-Ser-Ser-Ala-Asn-Ala-Ile-226) whereas the corresponding segments in other PCNAs contain only eight residues corresponding to 186-Gly-Val-Ser-Asp-Arg------224-Asn-Ala-Ile-226. The enhanced length of this segment in LdPCNA may influence its mode of interaction with DNA and other proteins. The dissociation constants obtained using real time binding studies with surface plasmon resonance (SPR) for two peptides, Lys-Arg-Arg-Gln-Thr-Ser-Met-Thr-Asp-Phe-Tyr-His (P1) from human cyclin-dependent kinase inhibitor-1(CKI-1) and Lys-Thr-Gln-Gly-Arg-Leu-Asp-Ser-Phe-Phe-Thr-Val (P2) from flap endonuclease 1 (Fen-1) as well as with two small molecule inhibitors, (S)-4-(4-(2-amino-3-hydroxypropyl)-2, 6-diiodophenoxy) phenol hydrochloride (ADPH) and N-(3-methylthiophene-2-carboxylicacid)-N'-((3-hydroxy-2-naphthalenyl) methylene) hydrazide (MCMH) are 0.29±0.09µM, 0.37±0.08µM, 0.35±0.09µM and 1.20±0.08µM respectively. The corresponding values obtained using fluorescence spectroscopic methods were 0.22±0.06µM, 0.68±0.07µM, 0.44±0.07µM and 0.75±0.05µM respectively.


Asunto(s)
ADN Protozoario/química , Leishmania donovani/química , Antígeno Nuclear de Célula en Proliferación/química , Proteínas Protozoarias/química , Secuencia de Aminoácidos , Sitios de Unión , Clonación Molecular , Cristalografía por Rayos X , Inhibidor p21 de las Quinasas Dependientes de la Ciclina/química , ADN Protozoario/genética , ADN Protozoario/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Endonucleasas de ADN Solapado/química , Expresión Génica , Leishmania donovani/metabolismo , Modelos Moleculares , Fenoles/química , Antígeno Nuclear de Célula en Proliferación/genética , Antígeno Nuclear de Célula en Proliferación/metabolismo , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína , Proteínas Protozoarias/antagonistas & inhibidores , Proteínas Protozoarias/genética , Proteínas Protozoarias/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido
7.
Biochim Biophys Acta Proteins Proteom ; 1865(3): 329-335, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-27986533

RESUMEN

Lactoperoxidase (LPO) is a member of mammalian heme peroxidase superfamily whose other members are myeloperoxidase (MPO), eosinophil peroxidase (EPO) and thyroid peroxidase (TPO). In these enzymes, the heme moiety is linked to protein through two or three covalent bonds. In the mature LPO, the heme moiety is linked to protein through two ester bonds with highly conserved glutamate and aspartate residues. The previously reported structures of LPO have confirmed the formation of two covalent linkages involving Glu258 and Asp108 with 1-methyl and 5-methyl groups of pyrrole rings A and C respectively. We report here a new form of structure of LPO where the covalent bond between Glu258 and 1-methyl group of pyrrole ring A is present only in a fraction of protein molecules. In this case, the side chain of Glu258 occupies two distinct positions, each of which has a 0.5 occupancy. In one position, it forms a normal ester covalent linkage while in the second position, the side chain of Glu258 is located in the middle of the substrate binding site on the distal heme side. In this position, the atom of the side chain of Glu258 forms several contacts with atoms of other residues and heme moiety. Out of the two observed positions of the side chain of Glu258, the former contributes to the stabilization of heme position and improved catalytic action of LPO while the latter is responsible for the reduced stability of the heme position as well as it blocks the substrate binding site.


Asunto(s)
Hemo/metabolismo , Lactoperoxidasa/metabolismo , Animales , Ácido Aspártico/metabolismo , Sitios de Unión/fisiología , Bovinos , Cristalografía por Rayos X/métodos , Ácido Glutámico/metabolismo , Mamíferos/metabolismo , Modelos Moleculares , Peroxidasa/metabolismo , Conformación Proteica
8.
J Sep Sci ; 38(19): 3469-76, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26179897

RESUMEN

In this study, new molecularly imprinted polymer (MIP) nanoparticles are designed for selective recognition of different drugs used for the treatment of type 2 diabetes mellitus, i.e. sitagliptin (SG) and metformin (MF). The SG- and MF-imprinted polymer nanoparticles are synthesized by free-radical initiated polymerization of the functional monomers: methacrylic acid and methyl methacrylate; and the crosslinker: ethylene glycol dimethacrylate. The surface morphology of resultant MIP nanoparticles is studied by atomic force microscopy. Fourier transform infrared spectra of MIP nanoparticles suggest the presence of reversible, non-covalent interactions between the template and the polymer. The effect of pH on the rebinding of antidiabetic drugs with SG- and MF-imprinted polymers is investigated to determine the optimal experimental conditions. The molecular recognition characteristics of SG- and MF-imprinted polymers for the respective drug targets are determined at low concentrations of SG (50-150 ppm) and MF (5-100 ppm). In both cases, the MIP nanoparticles exhibit higher binding response compared to non-imprinted polymers. Furthermore, the MIPs demonstrate high selectivity with four fold higher responses toward imprinted drugs targets, respectively. Recycled MIP nanoparticles retain 90% of their drug-binding efficiency, which makes them suitable for successive analyses with significantly preserved recognition features.


Asunto(s)
Hipoglucemiantes/aislamiento & purificación , Impresión Molecular/métodos , Nanopartículas/química , Materiales Biomiméticos/síntesis química , Materiales Biomiméticos/química , Humanos , Concentración de Iones de Hidrógeno , Metformina/química , Metformina/aislamiento & purificación , Microscopía de Fuerza Atómica , Nanopartículas/ultraestructura , Polimerizacion , Polímeros/síntesis química , Polímeros/química , Fosfato de Sitagliptina/química , Fosfato de Sitagliptina/aislamiento & purificación , Espectroscopía Infrarroja por Transformada de Fourier , Propiedades de Superficie
9.
ScientificWorldJournal ; 2014: 543195, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24696647

RESUMEN

Pathogenesis related (PR) proteins are one of the major sources of plant derived allergens. These proteins are induced by the plants as a defense response system in stress conditions like microbial and insect infections, wounding, exposure to harsh chemicals, and atmospheric conditions. However, some plant tissues that are more exposed to environmental conditions like UV irradiation and insect or fungal attacks express these proteins constitutively. These proteins are mostly resistant to proteases and most of them show considerable stability at low pH. Many of these plant pathogenesis related proteins are found to act as food allergens, latex allergens, and pollen allergens. Proteins having similar amino acid sequences among the members of PR proteins may be responsible for cross-reactivity among allergens from diverse plants. This review analyzes the different pathogenesis related protein families that have been reported as allergens. Proteins of these families have been characterized in regard to their biological functions, amino acid sequence, and cross-reactivity. The three-dimensional structures of some of these allergens have also been evaluated to elucidate the antigenic determinants of these molecules and to explain the cross-reactivity among the various allergens.


Asunto(s)
Alérgenos/química , Hipersensibilidad a los Alimentos/inmunología , Proteínas de Plantas/química , Proteínas de Plantas/fisiología , Secuencia de Aminoácidos , Reacciones Cruzadas , Humanos , Datos de Secuencia Molecular , Plantas Modificadas Genéticamente , Conformación Proteica
10.
J Adv Res ; 36: 15-26, 2022 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-35127161

RESUMEN

INTRODUCTION: Hydrogen is considered as a clean alternative green energy future fuel. Since the Honda-Fujishima effect for photoelectrochemical water splitting is known, there has been a substantial boost in this field. Numerous photocatalysts based on metals, semiconductors, and organic-inorganic hybrid-systems have been proposed. Several factors limit their efficiency, e.g., a stable PEC-WS setup, absorbing visible light, well-aligned band energy for charge transfer, electrons and holes, and their separation to avoid recombination and limited water redox reactions. Metallic doping and impregnation of stable and efficient co-catalysts such as Pt, Ag, and Au showed enhanced PEC-WS. We used Cobalt-based co-catalyst with molybdenum oxysulfide photocatalyst for effectual solar-driven water splitting. OBJECTIVES: To develop photocatalysts for efficient PEC processes capable of absorbing sufficient visible light, good band energy for effective charge transfer, inexpensive, significant solar-to-chemical energy conversion efficiencies. Above all, it is developing such PEC-WS systems that will be commercially viable for renewable energy resources. METHODS: We prepared Molybdenum oxysulphide-cobalt phosphate photocatalyst for PEC-WS through a facile hydrothermal route using ammonium heptamolybdate, thiourea, and metallic Cobalt precursors. RESULTS: An effectual photocatalyst is produced for solar-driven water splitting. The conformal morphology of MoOxSy-CoPi nanoflowers is a significant feature, as observed under FE-SEM and HR-TEM. XRD confirmed the degree of purity and orthorhombic crystal structure of MoOxSy-CoPi. EDX and XPS identify the elemental compositions and corresponding oxidation states of each atom. A 2.44 eV band-gap energy is calculated for MoOxSy-CoPi from the diffused reflectance spectrum. Photo- Electrochemical Studies (PEC) under 1-SUN solar irradiation revealed 7-8 folds enhanced photocurrent (∼ 3.5 mA/cm2) generated from MoOxSy-CoPi/FTO in comparison to Co-PI/FTO (∼ 0.5 mA/cm2) and MoOxSy-/FTO respectively, within 0.5 M Na2SO4 electrolyte (@pH=7) and standard three electrodes electrochemical cell. CONCLUSION: Our results showed MoOxSy-CoPi as promising photocatalyst material for improved solar-driven photoelectrochemical water splitting system.

11.
Nat Commun ; 13(1): 5879, 2022 10 06.
Artículo en Inglés | MEDLINE | ID: mdl-36202818

RESUMEN

Cellular proteins CPSF6, NUP153 and SEC24C play crucial roles in HIV-1 infection. While weak interactions of short phenylalanine-glycine (FG) containing peptides with isolated capsid hexamers have been characterized, how these cellular factors functionally engage with biologically relevant mature HIV-1 capsid lattices is unknown. Here we show that prion-like low complexity regions (LCRs) enable avid CPSF6, NUP153 and SEC24C binding to capsid lattices. Structural studies revealed that multivalent CPSF6 assembly is mediated by LCR-LCR interactions, which are templated by binding of CPSF6 FG peptides to a subset of hydrophobic capsid pockets positioned along adjoining hexamers. In infected cells, avid CPSF6 LCR-mediated binding to HIV-1 cores is essential for functional virus-host interactions. The investigational drug lenacapavir accesses unoccupied hydrophobic pockets in the complex to potently impair HIV-1 inside the nucleus without displacing the tightly bound cellular cofactor from virus cores. These results establish previously undescribed mechanisms of virus-host interactions and antiviral action.


Asunto(s)
Fármacos Anti-VIH , Infecciones por VIH , VIH-1 , Priones , Humanos , Proteínas de la Cápside/metabolismo , Drogas en Investigación , Glicina/metabolismo , VIH-1/metabolismo , Interacciones Microbiota-Huesped , Factores de Escisión y Poliadenilación de ARNm/metabolismo , Proteínas de Complejo Poro Nuclear/metabolismo , Fenilalanina/metabolismo , Priones/metabolismo , Integración Viral
12.
Sci Rep ; 11(1): 16886, 2021 Aug 19.
Artículo en Inglés | MEDLINE | ID: mdl-34413449

RESUMEN

Molybdenum (Mo) impregnated g-C3N4 (Mo-CN) nanotubes are fabricated via a thermal/hydrothermal process to augment photoelectrochemical properties during solar-driven water-splitting (SDWS) reactions. Graphitic-C3N4 is an attractive material for photocatalysis because of its suitable band energy, high thermal and chemical stability. The FE-SEM and HR-TEM comprehend the nanotube-like morphology of Mo-CN. The spectroscopic characterization revealed bandgap energy of 2.63 eV with high visible-light activity. The x-ray diffraction of pristine g-C3N4 and Mo-CN nanotubes discloses the formation of triazine-based nanocrystalline g-C3N4, which remains stable during hydrothermal impregnation of Mo. Furthermore, Mo-CN nanotubes possess high sp2-hybridized nitrogen content, and metallic/oxidized Mo nanoparticles (in a ratio of 1:2) are impregnated into g-C3N4. The XPS analysis confirms C, N, and Mo for known atomic and oxidation states in Mo-CN. Furthermore, high photocurrent efficiency (~ 5.5 mA/cm2) is observed from 5%-Mo-CN nanotubes. That displays efficient SDWS by 5%-Mo-CN nanotubes than other counterparts. Impedance spectroscopy illustrated the lowest charge transfer resistance (Rct) of 5%-Mo-CN nanotubes, which further confirms the fast electron transfer kinetics and efficient charge separation resulting in high photocurrent generation. Hence, 5%Mo-CN composite nanotubes can serve as a potential photocatalytic material for viable solar-driven water splitting.

13.
Protein Pept Lett ; 28(4): 450-458, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-32798368

RESUMEN

BACKGROUND: Type-III Pantothenate kinase from the multi drug resistant bacteria, Acinetobacter baumannii (AbPanK) catalyzes the first step of the essential Coenzyme A biosynthesis pathway. AbPanK is an attractive drug target against the bacteria since it is an essential enzyme and its structure is significantly different from the human PanK. METHODS: AbPanK was cloned, expressed, purified and crystallized. A good quality single crystal was used for X-ray intensity data collection. Dynamic light scattering was done for calculating the hydrodynamic radii and its oligomeric nature in the solution. Binding studies of this protein with its two substrates, Pantothenate and ATP were done using spectrofluorometer. RESULTS: Our results indicated that AbPanK shows a strong affinity with pantothenate with dissociation constant of 1.2 x 10- 8 M and moderate affinity towards ATP of 3.7x 10-3 M. This fact was further substantiated by the calculations of Km of both substrates using kinase assay kit. Dynamic light scattering studies have shown that it exists as homogenous solution with hydrodynamic radii corresponding to the molecular weight of 29.55 kDa. A low-resolution X-ray intensity data set was collected, which shows that AbPank crystallizes in P2 space group with cell dimensions of a= 165 Å, b= 260 Å, and, c= 197 Å and α= 90.0, ß= 113.60, γ= 90.0. DISCUSSION: Recombinant Pantothenate kinase from Acinetobacter baumannii was purified to homogeneity and crystallized. The enzyme exhibits very low sequence identity (28%) to other corresponding enzymes. CONCLUSION: The recombinant enzyme was active and its binding affinities with its substrates pantothenate and ATP have been studied. This information would be very useful while designing the inhibitors of this enzyme in order to fight bacterial infections associated to this pathogen.


Asunto(s)
Acinetobacter baumannii/enzimología , Adenosina Trifosfato/química , Proteínas Bacterianas/química , Ácido Pantoténico/química , Fosfotransferasas (Aceptor de Grupo Alcohol)/química , Acinetobacter baumannii/genética , Proteínas Bacterianas/genética , Cristalografía por Rayos X , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Dominios Proteicos
14.
Anal Methods ; 13(36): 4019-4037, 2021 09 23.
Artículo en Inglés | MEDLINE | ID: mdl-34555136

RESUMEN

The emergence of a pandemic scale respiratory illness (COVID-19: coronavirus disease 2019) and the lack of the world's readiness to prevent its spread resulted in an unprecedented rise of biomedical diagnostic industries, as they took lead to provide efficient diagnostic solutions for COVID-19. However, these circumstances also led to numerous emergency use authorizations without appropriate evaluation that compromised standards, which could result in a larger than usual number of false-positive or false-negative results, leading to unwanted ambiguity in already confusing realities of the pandemic-hit closures of the world economy. This review is aimed at comparing the claimed or reported clinical sensitivity and clinical specificity of commercially available rapid antibody diagnostics with independently evaluated clinical performance results of the tests. Thereby, we not only present the types of modern antibody diagnostics and their working principles but summarize their experimental evaluations and observed clinical efficiencies to highlight the research, development, and commercialization issues with future challenges. Still, it must be emphasized that the serological or antibody tests do not serve the purpose of early diagnosis but are more suitable for epidemiology and screening populaces with an active immune response, recognizing convalescent plasma donors, and determining vaccine efficacy.


Asunto(s)
COVID-19 , SARS-CoV-2 , Inmunidad Adaptativa , COVID-19/terapia , Humanos , Inmunización Pasiva , Sensibilidad y Especificidad , Sueroterapia para COVID-19
15.
Sensors (Basel) ; 10(7): 6361-76, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-22163554

RESUMEN

A piezoelectric 10 MHz multichannel quartz crystal microbalance (MQCM), coated with six molecularly imprinted polystyrene artificial recognition membranes have been developed for selective quantification of terpenes emanated from fresh and dried Lamiaceae family species, i.e., rosemary (Rosmarinus Officinalis L.), basil (Ocimum Basilicum) and sage (Salvia Officinalis). Optimal e-nose parameters, such as layer heights (1-6 KHz), sensitivity <20 ppm of analytes, selectivity at 50 ppm of terpenes, repeatability and reproducibility were thoroughly adjusted prior to online monitoring. Linearity in reversible responses over a wide concentration range <20-250 ppm has been achieved. Discrimination between molecules of similar molar masses, even for isomers, e.g. α-pinene and ß-pinene is possible. The array has proven its sensitive and selective properties of sensor responses (20-1,200 Hz) for the difference of fresh and dried herbs. The sensor data attained was validated by GC-MS, to analyze the profiles of sensor emanation patterns. The shelf-life of herbs was monitored via emanation of organic volatiles during a few days. Such an array in association with data analysis tools can be utilized for characterizing complex mixtures.


Asunto(s)
Biomimética , Impresión Molecular/instrumentación , Plantas/química , Cuarzo , Terpenos/análisis , Cromatografía de Gases y Espectrometría de Masas
16.
Nanomaterials (Basel) ; 10(11)2020 Oct 27.
Artículo en Inglés | MEDLINE | ID: mdl-33120962

RESUMEN

Fabrication of gas sensors to monitor toxic exhaust gases at high working temperatures is a challenging task due to the low sensitivity and narrow long-term stability of the devices under harsh conditions. Herein, the fabrication of a chemiresistor-type gas sensor is reported for the detection of NO2 gas at 600 °C. The sensing element consists of ZnFe2O4 nanoparticles prepared via a high-energy ball milling and annealed at different temperatures (600-1000 °C). The effects of annealing temperature on the crystal structure, morphology, and gas sensing properties of ZnFe2O4 nanoparticles are studied. A mixed spinel structure of ZnFe2O4 nanoparticles with a lattice parameter of 8.445 Å is revealed by X-ray diffraction analysis. The crystallite size and X-ray density of ZnFe2O4 nanoparticles increase with the annealing temperature, whereas the lattice parameter and volume are considerably reduced indicating lattice distortion and defects such as oxygen vacancies. ZnFe2O4 nanoparticles annealed at 1000 °C exhibit the highest sensitivity (0.13% ppm-1), sharp response (τres = 195 s), recovery (τrec = 17 s), and linear response to 100-400 ppm NO2 gas. The annealing temperature and oxygen vacancies play a major role in determining the sensitivity of devices. The plausible sensing mechanism is discussed. ZnFe2O4 nanoparticles show great potential for high-temperature exhaust gas sensing applications.

17.
RSC Adv ; 10(57): 34355-34363, 2020 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-35514404

RESUMEN

Monitoring antimalarial drugs is necessary for clinical assays, human health, and routine quality control practices in pharmaceutical industries. Herein, we present the development of sensor coatings based on molecularly imprinted polymers (MIPs) combined with quartz crystal microbalance (QCM) for sensitive and selective gravimetric detection of an antimalarial drug: artemether. The MIP coatings are synthesized by using artemether as the template in a poly(methacrylic acid-co-ethylene glycol dimethacrylate) matrix. Artemether-MIP and the non-imprinted polymer (NIP) control or reference layers are deposited on 10 MHz dual-electrode QCM by spin coating (187 ± 9 nm layer thickness after optimization). The coatings are characterized by FTIR spectroscopy and atomic force microscopy that reveal marked differences among the MIP and NIP. The MIP-QCM sensor exhibits high sensitivity (0.51 Hz ppm-1) with sub-10 ppm detection and quantification limits. The MIP-QCM sensor also exhibits a 6-fold higher sensitivity compared to the NIP-QCM, and a dynamic working range of 30-100 ppm. The response time of MIP-QCM devices for a single cycle of analyte adsorption, signal saturation, and MIP regeneration is less than 2.5 min. The sensor also demonstrates selectivity factors of artemether-MIP of 2.2 and 4.1 compared to artemisinin and lumefantrine, respectively. Reversibility tests reveal less than 5% variation in sensor responses over three cycles of measurements at each tested concentration. The MIP-QCM showed lower detection limits than conventional HPLC-UV, and faster response time compared to HPLC-UV and liquid chromatography-mass spectrometry (LC-MS).

18.
Science ; 370(6514): 360-364, 2020 10 16.
Artículo en Inglés | MEDLINE | ID: mdl-33060363

RESUMEN

The potent HIV-1 capsid inhibitor GS-6207 is an investigational principal component of long-acting antiretroviral therapy. We found that GS-6207 inhibits HIV-1 by stabilizing and thereby preventing functional disassembly of the capsid shell in infected cells. X-ray crystallography, cryo-electron microscopy, and hydrogen-deuterium exchange experiments revealed that GS-6207 tightly binds two adjoining capsid subunits and promotes distal intra- and inter-hexamer interactions that stabilize the curved capsid lattice. In addition, GS-6207 interferes with capsid binding to the cellular HIV-1 cofactors Nup153 and CPSF6 that mediate viral nuclear import and direct integration into gene-rich regions of chromatin. These findings elucidate structural insights into the multimodal, potent antiviral activity of GS-6207 and provide a means for rationally developing second-generation therapies.


Asunto(s)
Fármacos Anti-VIH , Cápside , VIH-1 , Humanos , Fármacos Anti-VIH/química , Fármacos Anti-VIH/farmacología , Cápside/química , Cápside/efectos de los fármacos , Microscopía por Crioelectrón , Cristalografía por Rayos X , Medición de Intercambio de Deuterio , Células HEK293 , Células HeLa , VIH-1/química , VIH-1/efectos de los fármacos , Factores de Escisión y Poliadenilación de ARNm/química , Proteínas de Complejo Poro Nuclear/química , Dominios Proteicos , Integración Viral
19.
ChemSusChem ; 11(3): 542-546, 2018 02 09.
Artículo en Inglés | MEDLINE | ID: mdl-29250932

RESUMEN

Metal-organic frameworks (MOFs) are class of porous materials that can be assembled in a modular manner by using different metal ions and organic linkers. Owing to their tunable structural properties, these materials are found to be useful for gas storage and separation technologies, as well as for catalytic applications. A cost-effective zinc-based MOF ([Zn(bpcda)(bdc)]n ) is prepared by using N,N'-bis(pyridin-4-ylmethylene)cyclohexane-1,4-diamine [N,N'-bis(pyridin-4-ylmethylene)cyclohexane-1,4-diamine] and benzenedicarboxylic acid (bdc) linkers. This new material exhibits remarkable photoelectrochemical (PEC) catalytic activity in water splitting for the evolution of oxygen. Notably, this non-noble metal-based MOF, without requiring immobilization on other supports or containing metal particles, produced a highest photocurrent density of 31 µA cm-2 at 0.9 V, with appreciable stability and negligible photocorrosion. Advantageously for the oxygen evolution process, no external reagents or sacrificial agents are required in the aqueous electrolyte solution.


Asunto(s)
Técnicas Electroquímicas/métodos , Estructuras Metalorgánicas/química , Compuestos Orgánicos/química , Procesos Fotoquímicos , Compuestos de Zinc/química , Catálisis , Análisis Costo-Beneficio , Ácidos Dicarboxílicos/química , Porosidad , Piridinas/química , Agua/química
20.
Prog Biophys Mol Biol ; 133: 49-55, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29174286

RESUMEN

The mammalian heme peroxidases including lactoperoxidase (LPO), myeloperoxidase (MPO), eosinophil peroxidase (EPO) and thyroid peroxidase (TPO) contain a covalently linked heme moiety. Initially, it was believed that the heme group was fully cross-linked to protein molecule through at least two ester linkages involving conserved glutamate and aspartate residues with 1-methyl and 5-methyl groups of pyrrole rings A and C respectively. In MPO, an additional sulfonium ion linkage was present between 2-vinyl group of pyrrole ring A of the heme moiety and a methionine residue of the protein. These linkages were formed through a self processing mechanism. Subsequently, biochemical studies indicated that the heme moiety was partially attached to protein. The recent structural studies have shown that the covalent linkage involving glutamate and 1-methyl group of pyrrole ring of heme moiety was partially formed. When glutamate is not covalently linked to heme moiety, its side chain occupies a position in the substrate binding site on the distal heme side and blocks the substrate binding site leading to inactivation. However, an exposure to H2O2 converts it to a fully covalently linked state with heme. Thus in mammalian heme peroxidases, the Glu-heme linkage is essential for catalytic action.


Asunto(s)
Hemo/metabolismo , Peroxidasas/química , Peroxidasas/metabolismo , Animales , Activación Enzimática
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