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1.
Front Plant Sci ; 15: 1341454, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38476686

RESUMEN

The latex of the medicinal plant Artocarpus lakoocha (A. lakoocha), which has been shown to have potential anti-inflammatory and wound-healing capabilities, contains a novel heme-peroxidase. This protein was subjected to activity assays, fluorescence spectroscopy, and far-UV circular dichroism to investigate its structure, dynamics, and stability. The results demonstrated the presence of three folding states: the native state (N) at neutral pH, intermediate states including molten globule (MG) at pH 2 and acid-unfolded (UA) at pH 1.5 or lower, and acid-refolded (A) at pH 0.5, along with alkaline denatured (UB) at pH 8-12 and the third denatured state (D) at GuHCl concentrations exceeding 5 M. Absorbance studies indicated the presence of loosely associated form of heme in the pH range of 1-2. The protein showed stability and structural integrity across a wide pH range (3-10), temperature (70°C), and high concentrations of GuHCl (5 M) and urea (8 M). This study is the first to report multiple 'partially folded intermediate states' of A. lakoocha peroxidase, with varying amounts of secondary structure, stability, and compactness. These results demonstrate the high stability of A. lakoocha peroxidase and its potential for biotechnological and industrial applications, making it a valuable model system for further studies on its structure-function relationship.

2.
Blood Cells Mol Dis ; 47(2): 129-32, 2011 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-21742519

RESUMEN

Several anticoagulants, anti-platelet and thrombolytic medications are used for the treatment of thrombotic disorders. Anti-coagulants and anti-platelet agents prevent the formation of blood clots but do not dissolve existing clots, whereas thrombolytic agents are able to dissolve a clot but emboli can form even after successful treatment. Thus, none of them provide a permanent and complete solution. In this regard a single molecule that could both dissolve the clot and prevent the formation of new clots would be useful in the treatment of thrombotic diseases. Crinumin, a stable and active (in many adverse conditions) serine protease, shows plasmin-like fibrinolytic activity and inhibits platelet aggregation and P-selectin exposure, as established by photography, phase contrast microscopy, whole blood optical Lumi-aggregometry and flow cytometry. Crinumin could be an efficient and inexpensive therapeutic agent for the treatment and prevention of thromboembolic diseases.


Asunto(s)
Anticoagulantes/farmacología , Plaquetas/metabolismo , Crinum/química , Fibrinolíticos/farmacología , Proteínas de Plantas/farmacología , Activación Plaquetaria/efectos de los fármacos , Agregación Plaquetaria/efectos de los fármacos , Tromboembolia , Trombosis , Anticoagulantes/aislamiento & purificación , Anticoagulantes/uso terapéutico , Plaquetas/citología , Cromatografía por Intercambio Iónico , Relación Dosis-Respuesta a Droga , Electroforesis en Gel de Poliacrilamida , Fibrinólisis/efectos de los fármacos , Fibrinolíticos/aislamiento & purificación , Fibrinolíticos/uso terapéutico , Citometría de Flujo , Humanos , Selectina-P/análisis , Selectina-P/química , Extractos Vegetales/química , Extractos Vegetales/aislamiento & purificación , Hojas de la Planta/química , Proteínas de Plantas/aislamiento & purificación , Proteínas de Plantas/uso terapéutico , Tromboembolia/sangre , Tromboembolia/tratamiento farmacológico , Tromboembolia/patología , Tromboembolia/prevención & control , Trombosis/sangre , Trombosis/tratamiento farmacológico , Trombosis/patología , Trombosis/prevención & control
3.
Eur Biophys J ; 40(8): 923-35, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21611854

RESUMEN

Equilibrium unfolding of A. niger RNase with chemical denaturants, for example GuHCl and urea, and thermal unfolding have been studied as a function of pH using fluorescence, far-UV, near-UV, and absorbance spectroscopy. Because of their ability to affect electrostatic interactions, pH and chemical denaturants have a marked effect on the stability, structure, and function of many globular proteins. ANS binding studies have been conducted to enable understanding of the folding mechanism of the protein in the presence of the denaturants. Spectroscopic studies by absorbance, fluorescence, and circular dichroism and use of K2D software revealed that the enzyme has α + ß type secondary structure with approximately 29% α-helix, 24% ß-sheet, and 47% random coil. Under neutral conditions the enzyme is stable in urea whereas GuHCl-induced equilibrium unfolding was cooperative. A. niger RNase has little ANS binding even under neutral conditions. Multiple intermediates were populated during the pH-induced unfolding of A. niger RNase. Urea and temperature-induced unfolding of A. niger RNase into the molten globule-like state is non-cooperative, in contrast to the cooperativity seen with the native protein, suggesting the presence of two parts/domains, in the molecular structure of A. niger RNase, with different stability that unfolds in steps. Interestingly, the GuHCl-induced unfolding of the A state (molten globule state) of A. niger RNase is unique, because a low concentration of denaturant not only induces structural change but also facilitates transition from one molten globule like state (A(MG1)) into another (I(MG2)).


Asunto(s)
Aspergillus niger/genética , Endorribonucleasas/química , Desnaturalización Proteica , Desplegamiento Proteico , Aspergillus niger/química , Dicroismo Circular , Guanidina/farmacología , Concentración de Iones de Hidrógeno , Cinética , Conformación Proteica/efectos de los fármacos , Desnaturalización Proteica/efectos de los fármacos , Desplegamiento Proteico/efectos de los fármacos , Espectrometría de Fluorescencia , Espectrofotometría Ultravioleta , Temperatura , Termodinámica , Urea/farmacología
4.
Artículo en Inglés | MEDLINE | ID: mdl-21543873

RESUMEN

A quantitatively major protein has been purified from the latex of Morus indica. The purified previously uncharacterized protein, M. indica lectin (MIL), was further shown to be a glycosylated tetramer and belongs to the family of jacalin-related lectins. Crystallization of MIL was also accomplished and the tetragonal crystals diffracted synchrotron X-rays to a resolution of 2.8 Å.


Asunto(s)
Morus/química , Lectinas de Plantas/química , Secuencia de Aminoácidos , Cristalización , Cristalografía por Rayos X , Glicosilación , Datos de Secuencia Molecular , Lectinas de Plantas/aislamiento & purificación , Lectinas de Plantas/metabolismo , Alineación de Secuencia
5.
Eur Biophys J ; 39(10): 1385-96, 2010 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20333375

RESUMEN

Kinetically stable homodimeric serine protease milin reveals high conformational stability against temperature, pH and chaotrope [urea, guanidine hydrochloride (GuHCl) and guanidine isothiocynate (GuSCN)] denaturation as probed by circular dichroism, fluorescence, differential scanning calorimetry and activity measurements. GuSCN induces complete unfolding in milin, whereas temperature, urea and GuHCl induce only partial unfolding even at low pH, through several intermediates with distinct characteristics. Some of these intermediates are partially active (viz. in urea and 2 M GuHCl at pH 7.0), and some exhibited strong ANS binding as well. All three tryptophans in the protein seem to be buried in a rigid, compact core as evident from intrinsic fluorescence measurements coupled to equilibrium unfolding experiments. The protein unfolds as a dimer, where the unfolding event precedes dimer dissociation as confirmed by hydrodynamic studies. The solution studies performed here along with previous biochemical characterization indicate that the protein has alpha-helix and beta-sheet rich regions or structural domains that unfold independently, and the monomer association is isologous. The complex unfolding pathway of milin and the intermediates has been characterized. The physical, physiological and probable therapeutic importance of the results has been discussed.


Asunto(s)
Guanidina/farmacología , Pliegue de Proteína/efectos de los fármacos , Multimerización de Proteína/efectos de los fármacos , Serina Proteasas/química , Serina Proteasas/metabolismo , Rastreo Diferencial de Calorimetría , Dicroismo Circular , Concentración de Iones de Hidrógeno , Cinética , Desnaturalización Proteica/efectos de los fármacos , Renaturación de Proteína/efectos de los fármacos , Estructura Secundaria de Proteína/efectos de los fármacos , Temperatura
6.
Eur Biophys J ; 39(12): 1581-8, 2010 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-20549500

RESUMEN

The effect of deglycosylation on the physiological and functional organization of milin was studied under different denaturizing conditions. Trifluoromethanesulfonic acid mediated deglycosylation resulted in insoluble milin, which was found to be soluble only in 1.5 M GuHCl with native-like folded structure. Kinetic stability, proteolytic activity, and dimeric association were lost in deglycosylated milin. Urea-induced unfolding revealed two inactive, highly stable equilibrium intermediates at pH 7.0 and pH 2.0. These intermediates were stable between 5.5-6.5 and 5.0-6.0 M total chaotropes (urea + 1.5 M GuHCl) at pH 7.0 and pH 2.0, respectively. GuHCl-induced unfolding was cooperative and noncoincidental with a broad transition range (2.0-5.0 M) at pH 7.0 and pH 2.0. Equilibrium unfolding of deglycosylated milin by urea and GuHCl substantiates the involvement of various inactive monomeric intermediates. This study provides a way to understand the role of glycosylation in the unfolding mechanism, stability, and functional activity of the serine protease milin.


Asunto(s)
Guanidina/farmacología , Pliegue de Proteína/efectos de los fármacos , Serina Proteasas/química , Serina Proteasas/metabolismo , Dicroismo Circular , Estabilidad de Enzimas/efectos de los fármacos , Glicósidos/química , Glicósidos/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Mesilatos/farmacología , Estructura Secundaria de Proteína/efectos de los fármacos , Solubilidad , Espectrometría de Fluorescencia , Urea/farmacología
7.
Eur Biophys J ; 38(7): 981-91, 2009 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-19504261

RESUMEN

Spectroscopic, calorimetric, and proteolytic methods were utilized to evaluate the stability of the kinetically stable, differentially glycosylated, dimeric serine protease milin as a function of pH (1.0-11.0), temperature, urea, and GuHCl denaturation in presence of 8 M urea at pH 2.0. The stability of milin remains equivalent to that of native at pH 1.0-11.0. However, negligible and reversible alteration in structure upon temperature transition has been observed at pH 2.0 and with 1.6 M GuHCl. Irreversible and incomplete calorimetric transition with apparent T (m) > 100 degrees C was observed at basic pH (9.0 and 10.0). Urea-induced unfolding at pH 4.0, and at pH 2.0 with GuHCl, in presence of 8 M urea also reveals incomplete unfolding. Milin has been found to exhibit proteolytic resistant in either native or denatured state against various commercial proteases. These results imply that the high conformational stability of milin against various denaturating conditions enable its potential use in protease-based industries.


Asunto(s)
Multimerización de Proteína , Serina Proteasas/química , Serina Proteasas/metabolismo , Urea/farmacología , Animales , Rastreo Diferencial de Calorimetría , Estabilidad de Enzimas/efectos de los fármacos , Euphorbia/enzimología , Guanidina/farmacología , Concentración de Iones de Hidrógeno , Cinética , Desnaturalización Proteica/efectos de los fármacos , Estructura Cuaternaria de Proteína/efectos de los fármacos , Temperatura
8.
Artículo en Inglés | MEDLINE | ID: mdl-19342786

RESUMEN

Carnein is an 80 kDa subtilisin-like serine protease from the latex of the plant Ipomoea carnea which displays an exceptional resistance to chemical and thermal denaturation. In order to obtain the first crystal structure of a plant subtilisin and to gain insight into the structural determinants underlying its remarkable stability, carnein was isolated from I. carnea latex, purified and crystallized by the hanging-drop vapour-diffusion method. A data set was collected to 2.0 A resolution in-house from a single crystal at 110 K. The crystals belonged to the trigonal space group P3(1)21 or P3(2)21, with unit-cell parameters a = b = 126.9, c = 84.6 A, alpha = beta = 90, gamma = 120 degrees. Assuming the presence of one molecule per asymmetric unit, the Matthews coefficient is 2.46 A(3) Da(-1), corresponding to a solvent content of 50%. Structure determination of the enzyme is in progress.


Asunto(s)
Ipomoea/enzimología , Serina Endopeptidasas/química , Cromatografía en Gel , Cristalización , Cristalografía por Rayos X
9.
Phytochemistry ; 69(11): 2110-9, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18561962

RESUMEN

A high molecular mass serine protease has been purified to homogeneity from the latex of Morus indica cv. K2 by the combination of techniques of ammonium sulfate precipitation, hydrophobic interaction chromatography, and size-exclusion chromatography. The protein is a dimer with a molecular mass of 134.5 kDa and with two monomeric subunits of 67.2 kDa and 67.3 (MALDI-TOF), held by weak bonds susceptible to disruption on exposure to heat and very low pH. Isoelectric point of the enzyme is pH 4.8. The pH and temperature optima for caseinolytic activity were 8.5 and 80 degrees C, respectively. The extinction coefficient (epsilon280(1%)) of the enzyme was estimated as 41.24 and the molecular structure consists of 52 tryptophan, 198 tyrosine and 42 cysteine residues. The enzyme activity was inhibited by phenylmethylsulfonylflouride, chymostatin and mercuric chloride indicating the enzyme to be a serine protease. The enzyme is fairly stable and similar to subtilases in its stability toward pH, strong denaturants, temperature, and organic solvents. Polyclonal antibodies specific to enzyme and immunodiffusion studies reveal that the enzyme has unique antigenic determinants. The enzyme has activity towards broad range of substrates comparable to those of subtilisin like proteases. The N-terminal residues of indicain (T-T-N-S-W-D-F-I-G-F-P) exhibited considerable similarity to those of other known plant subtilases, especially with cucumisin, a well-characterized plant subtilase. This is the first report of purification and characterization of a subtilisin like dimeric serine protease from the latex of M. indica cv. K2. Owing to these unique properties the reported enzyme would find applications in food and pharma industry.


Asunto(s)
Morus/enzimología , Serina Endopeptidasas/metabolismo , Secuencia de Aminoácidos , Aminoácidos/química , Anticuerpos/inmunología , Dimerización , Estabilidad de Enzimas , Concentración de Iones de Hidrógeno , Peso Molecular , Alineación de Secuencia , Serina Endopeptidasas/química , Serina Endopeptidasas/inmunología , Serina Endopeptidasas/aislamiento & purificación , Inhibidores de Serina Proteinasa/farmacología , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Especificidad por Sustrato , Temperatura
10.
J Biotechnol ; 131(4): 404-17, 2007 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-17825936

RESUMEN

pH and chemical denaturant dependent conformational changes of a serine protease cryptolepain from Cryptolepis buchanani are presented in this paper. Activity measurements, near UV, far UV CD, fluorescence emission spectroscopy, and ANS binding studies have been carried out to understand the folding mechanism of the protein in the presence of denaturants. pH and chemical denaturants have a marked effect on the stability, structure, and function of many globular proteins due to their ability to influence the electrostatic interactions. The preliminary biophysical study on cryptolepain shows that major elements of secondary structure are beta-sheets. Under neutral conditions the enzyme was stable in urea while GuHCl-induced equilibrium unfolding was cooperative. Cryptolepain shows little ANS binding even under neutral conditions due to more hydrophobicity of beta-sheets. Multiple intermediates were populated during the pH-induced unfolding of cryptolepain. Temperature-induced denaturation of cryptolepain in the molten globule like state is non-cooperative, contrary to the cooperativity seen with the native protein, suggesting the presence of two parts, possibly domains, in the molecular structure of cryptolepain, with different stability that unfolds in steps. Interestingly, the GuHCl-induced unfolding of A state (molten globule state) of cryptolepain is unique, as lower concentration of denaturant, not only induces structure but also facilitate transition from one molten globule like state (MG(1)) into another (MG(2)). The increase of pH drives the protein into alkaline denatured state characterized by the absence of any ANS binding. GuHCl- and urea-induced unfolding transition curves at pH 12.0 were non-coincidental indicating the presence of an intermediate in the unfolding pathway.


Asunto(s)
Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Pliegue de Proteína , Naftalenosulfonatos de Anilina/metabolismo , Dicroismo Circular , Guanidina/farmacología , Concentración de Iones de Hidrógeno , Conformación Proteica/efectos de los fármacos , Desnaturalización Proteica/efectos de los fármacos , Espectrometría de Fluorescencia , Espectrofotometría Ultravioleta , Temperatura , Termodinámica , Urea/farmacología
11.
Artículo en Inglés | MEDLINE | ID: mdl-17277443

RESUMEN

Cryptolepain is a stable glycosylated novel serine protease purified from the latex of the medicinally important plant Cryptolepis buchanani. The molecular weight of the enzyme is 50.5 kDa, as determined by mass spectrometry. The sequence of the first 15 N-terminal resides of the protease showed little homology with those of other plant serine proteases, suggesting it to be structurally unique. Thus, it is of interest to solve the structure of the enzyme in order to better understand its structure-function relationship. X-ray diffraction data were collected from a crystal of cryptolepain and processed to 2.25 A with acceptable statistics. The crystals belong to the orthorhombic space group C222(1), with unit-cell parameters a = 81.78, b = 108.15, c = 119.86 A. The Matthews coefficient was 2.62 A(3) Da(-1) with one molecule in the asymmetric unit. The solvent content was found to be 53%. Structure determination of the enzyme is under way.


Asunto(s)
Cryptolepis/enzimología , Proteínas de Plantas/química , Serina Endopeptidasas/química , Secuencia de Aminoácidos , Cristalografía por Rayos X , Electroforesis en Gel de Poliacrilamida , Glicosilación , Datos de Secuencia Molecular , Proteínas de Plantas/aislamiento & purificación , Serina Endopeptidasas/aislamiento & purificación , Serina Endopeptidasas/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
12.
J Agric Food Chem ; 55(14): 5809-18, 2007 Jul 11.
Artículo en Inglés | MEDLINE | ID: mdl-17571896

RESUMEN

A new serine protease from the latex of Ipomoea carnea spp. fistulosa (Morning glory), belonging to the Convolvulaceae family, was purified to homogeneity by ammonium sulfate fractionation followed by cation exchange chromatography. The enzyme, named carnein, has a molecular mass of 80.24 kDa (matrix-assisted laser desorption/ionization time-of-flight) and an isoelectric point of pH 5.6. The pH and temperature optima for proteolytic activity were 6.5 and 65 degrees C, respectively. The extinction coefficient (epsilon2801%) of the enzyme was estimated as 37.12, and the protein molecule consists of 35 tryptophan, 76 tyrosine, and seven cysteine residues. The effect of several inhibitors such as iodoacetic acid, diisopropylfluorophosphate, phenyl-methanesulfonyl fluoride, chymostatin, soybean trypsin inhibitor, HgCl2, 3S-3-(N-{(S)-1-[N-(4-guanidinobutyl)carbamoyl]3-ethylbutyl}carbamoyl)oxirane-2-carboxylic acid, N-ethyl maleimide, ethylene glycol-bis(alpha-amino ethyl ether)tetraacetic acid, ethylenediamminetetraacetic acid, and o-phenonthroline indicates that carnein belongs to the family of serine proteases. The enzyme is not prone to autolysis even at very low concentrations. The N-terminal sequence of carnein (T-T-H-S-P-E-F-L-G-L-A-E-S-S-G-L-X-P-N-S) exhibited considerable similarity to those of other plant serine proteases; the highest similarity was with alnus AG12, one of the subtilase family endopepetidases.


Asunto(s)
Ipomoea/enzimología , Serina Endopeptidasas/aislamiento & purificación , Secuencia de Aminoácidos , Fenómenos Químicos , Química Física , Inmunoensayo , Cinética , Datos de Secuencia Molecular , Fragmentos de Péptidos/química , Inhibidores de Proteasas/farmacología , Serina Endopeptidasas/química , Serina Endopeptidasas/metabolismo , Especificidad por Sustrato
13.
Int J Biol Macromol ; 102: 384-395, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28363649

RESUMEN

Euphorbia tirucalli peroxidase (ETP) was immobilized on chitosan beads having magnetic properties for the ease of separation and increasing the reusability of ETP for cost effective assay conditions. The present work reports immobilization of ETP on polymeric support chitosan-cobalt oxide beads subsequently activated with 0.05% cynuric chloride. The magnetic immobilized enzyme was characterized by Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD) analysis and scanning electron microscopy (SEM). The immobilized ETP can be reused up to 10 cycles with retention of more than 60% activity. The optimum pH was shifted from 6.0 to 5.5 for soluble ETP to immobilized ETP and optimum temperature from 50°C and 55°C for the immobilized ETP. Based on response surface methodology, the optimal immobilization conditions obtained were: enzyme concentration, 2mg/286mg beads; optimal pH, 4.93; temperature, 28.88; cynuric chloride concentration, 0.17%; reaction time, 14.4h, which resulted 74.51% maximum immobilization. The enzyme magnetic nanoparticles could be separated magnetically for easy reuse. Immobilization of ETP onto the magnetic nanoparticles could be useful for biotechnological applications and bioassay due to its reusability and improved stability.


Asunto(s)
Quitosano/química , Cobalto/química , Enzimas Inmovilizadas/química , Euphorbia/enzimología , Nanopartículas de Magnetita/química , Óxidos/química , Peroxidasa/química , Estabilidad de Enzimas , Enzimas Inmovilizadas/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Peroxidasa/metabolismo , Temperatura
14.
J Agric Food Chem ; 54(26): 10141-50, 2006 Dec 27.
Artículo en Inglés | MEDLINE | ID: mdl-17177552

RESUMEN

A novel protease is purified to homogeneity from the latex of a medicinally important plant Cryptolepis buchanani of family Apocynaceae (formerly Asclepiadaceae). The enzyme named cryptolepain has a molecular mass of 50.5 kDa. The isoelectric point and extinction coefficient (epsilon280nm1%) are 6.0 and 26.4, respectively. Cryptolepain contains 15 tryptophans, 41 tyrosines, and eight cysteine residues forming four disulfide bridges. The detectable carbohydrate moiety in the enzyme was found to be 6-7%. Cryptolepain hydrolyzes denatured natural substrates like casein, azocasein, and azoalbumin with high specific activity. The protease is exclusively inhibited by serine protease inhibitors phenylmethansulfonyl fluoride and diisopropyl fluorophosphate. Hydrolysis of azoalbumin by the cryptolepain is optimal in the pH range of 8-10 and temperatures of 65-75 degrees C. The enzyme shows high stability against pH (2.5-11.5), temperature (up to 80 degrees C), and chemical denaturants. The Km value of the enzyme was found to be 10 microM with azocasein as the substrate. The N-terminal sequence of cryptolepain is unique and shows only little homology to other known serine proteases, which makes this enzyme an ideal candidate for our ongoing biochemical and structure-function investigations of proteases. Easy availability of the latex and simple purification procedures make the enzyme a good system for exploring the biophysical chemistry of serine proteases as well as applications in the food industry.


Asunto(s)
Cryptolepis/enzimología , Serina Endopeptidasas/aislamiento & purificación , Serina Endopeptidasas/metabolismo , Secuencia de Aminoácidos , Aminoácidos/análisis , Carbohidratos/análisis , Fenómenos Químicos , Química Física , Inhibidores Enzimáticos/farmacología , Estabilidad de Enzimas , Concentración de Iones de Hidrógeno , Datos de Secuencia Molecular , Serina Endopeptidasas/química , Especificidad por Sustrato
15.
Protein J ; 25(6): 399-410, 2006 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-17043757

RESUMEN

Structural and functional characteristics of jack bean urease (JBU), a hexameric enzyme having identical subunits, were investigated under neutral as well as acidic conditions by using CD, fluorescence, ANS binding and enzyme activity measurements. At low pH and low ionic strength, JBU exists in a partially unfolded state (U(A)-state), having predominantly beta structure and no tertiary interactions along with a strong ANS binding. Addition of salts like NaCl, KCl and Na(2)SO(4) to the U(A)-state induces refolding resulting in structural propensities similar to that of native hexamer. Moreover, at low concentrations, GuHCl behaves like an anion by inducing refolding of the U(A)-state. The anion-induced refolded state (I(A)-state) is more stable than U(A)-state and the stability is nearly equal to that of the native protein against chemical-induced and thermal denaturation. Overall, these observations support a model of protein folding for a multimeric protein where certain conformations (ensembles of substates) of low energy prevail and populated under non-native conditions with different stability.


Asunto(s)
Fabaceae/enzimología , Ureasa/química , Aniones/química , Aniones/farmacología , Dicroismo Circular , Guanidina/química , Concentración de Iones de Hidrógeno , Conformación Proteica/efectos de los fármacos , Desnaturalización Proteica , Pliegue de Proteína , Urea/química
16.
J Photochem Photobiol B ; 162: 374-385, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27424098

RESUMEN

In this study, an eco-friendly and sustainable green route was employed for the synthesis of stable silver nanoparticles (AgNPs) using aqueous leaf extract of Euphorbia hirta (AEE) as both reducing as well as a stabilizing agent. The synthesis of AgNPs was confirmed by UV-visible spectroscopy which produced a prominent SPR band at λmax 425nm after 25min of sunlight exposure. The AgNPs thus synthesized were optimized using one factor at a time approach, and these optimized conditions were 25min of sunlight exposure time, 5.0% (v/v) of AEE inoculum dose and 3.0mM of AgNO3 concentration. The Field Emission Scanning Electron Microscopy (FE-SEM) and High Resolution Transmission Electron Microscopy (HRTEM) analysis confirmed the presence of spherical AgNPs with average size 15.5nm. The crystallinity was determined by X-ray Diffractometer (XRD) and Selected Area Electron Diffraction (SAED) pattern. Chemical and elemental compositions were determined by Fourier Transformed Infrared Spectroscopy (FTIR) and Energy Dispersive X-ray Spectroscopy (EDX) respectively. The Atomic Force Microscopy (AFM) images with average roughness 1.15nm represented the lateral and 3D topological characteristic of AgNPs. The AgNPs thus synthesized showed effective antibacterial activity against gram negative and gram positive bacteria as well as hydrogen peroxide sensing property with a minimum detection limit of 10(-7)M.


Asunto(s)
Antibacterianos/química , Antibacterianos/farmacología , Peróxido de Hidrógeno/análisis , Nanopartículas del Metal/química , Nanotecnología , Procesos Fotoquímicos , Plata/química , Supervivencia Celular/efectos de los fármacos , Escherichia coli/citología , Escherichia coli/efectos de los fármacos , Tecnología Química Verde , Modelos Moleculares , Conformación Molecular , Nitrato de Plata/química , Staphylococcus aureus/citología , Staphylococcus aureus/efectos de los fármacos , Luz Solar
17.
Proteins ; 51(4): 489-97, 2003 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-12784208

RESUMEN

The crystal structure of a cysteine protease ervatamin B, isolated from the medicinal plant Ervatamia coronaria, has been determined at 1.63 A. The unknown primary structure of the enzyme could also be traced from the high-quality electron density map. The final refined model, consisting of 215 amino acid residues, 208 water molecules, and a thiosulfate ligand molecule, has a crystallographic R-factor of 15.9% and a free R-factor of 18.2% for F > 2sigma(F). The protein belongs to the papain superfamily of cysteine proteases and has some unique properties compared to other members of the family. Though the overall fold of the structure, comprising two domains, is similar to the others, a few natural substitutions of conserved amino acid residues at the interdomain cleft of ervatamin B are expected to increase the stability of the protein. The substitution of a lysine residue by an arginine (residue 177) in this region of the protein may be important, because Lys --> Arg substitution is reported to increase the stability of proteins. Another substitution in this cleft region that helps to hold the domains together through hydrogen bonds is Ser36, replacing a conserved glycine residue in the others. There are also some substitutions in and around the active site cleft. Residues Tyr67, Pro68, Val157, and Ser205 in papain are replaced by Trp67, Met68, Gln156, and Leu208, respectively, in ervatamin B, which reduces the volume of the S2 subsite to almost one-fourth that of papain, and this in turn alters the substrate specificity of the enzyme.


Asunto(s)
Cisteína Endopeptidasas/química , Plantas/enzimología , Secuencia de Aminoácidos , Sitios de Unión/genética , Dicroismo Circular , Cristalización , Cristalografía por Rayos X , Cisteína Endopeptidasas/genética , Cisteína Endopeptidasas/metabolismo , Estabilidad de Enzimas , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Estructura Terciaria de Proteína , Homología de Secuencia de Aminoácido , Especificidad por Sustrato
18.
J Biochem Mol Biol ; 35(2): 143-54, 2002 Mar 31.
Artículo en Inglés | MEDLINE | ID: mdl-12297023

RESUMEN

The structural and functional aspects of ervatamin B were studied in solution. Ervatamin B belongs to the alpha + beta class of proteins. The intrinsic fluorescence emission maximum of the enzyme was at 350 nm under neutral conditions, and at 355 nm under denaturing conditions. Between pH 1.0- 2.5 the enzyme exists in a partially unfolded state with minimum or no tertiary structure, and no proteolytic activity. At still lower pH, the enzyme regains substantial secondary structure, which is predominantly a beta-sheet conformation and shows a strong binding to 8-anilino-1- napthalene-sulfonic acid (ANS). In the presence of salt, the enzyme attains a similar state directly from the native state. Under neutral conditions, the enzyme was stable in urea, while the guanidine hydrochloride (GuHCl) induced equilibrium unfolding was cooperative. The GuHCl induced unfolding transition curves at pH 3.0 and 4.0 were non-coincidental, indicating the presence of intermediates in the unfolding pathway. This was substantiated by strong ANS binding that was observed at low concentrations of GuHCl at both pH 3.0 and 4.0. The urea induced transition curves at pH 3.0 were, however, coincidental, but non-cooperative. This indicates that the different structural units of the enzyme unfold in steps through intermediates. This observation is further supported by two emission maxima in ANS binding assay during urea denaturation. Hence, denaturant induced equilibrium unfolding pathway of ervatamin B, which differs from the acid induced unfolding pathway, is not a simple two-state transition but involves intermediates which probably accumulate at different stages of protein folding and hence adds a new dimension to the unfolding pathway of plant proteases of the papain superfamily.


Asunto(s)
Cisteína Endopeptidasas/química , Naftalenosulfonatos de Anilina , Dicroismo Circular , Guanidina , Concentración de Iones de Hidrógeno , Conformación Proteica , Desnaturalización Proteica , Estructura Secundaria de Proteína , Espectrometría de Fluorescencia , Espectrofotometría , Urea
19.
J Biochem Mol Biol ; 35(2): 155-64, 2002 Mar 31.
Artículo en Inglés | MEDLINE | ID: mdl-12297024

RESUMEN

The structural aspects of ervatamin B have been studied in different types of alcohol. This alcohol did not affect the structure or activity of ervatamin B under neutral conditions. At a low pH (3.0), different kinds of alcohol have different effects. Interestingly, at a certain concentration of non-fluorinated, aliphatic, monohydric alcohol, a conformational switch from the predominantly alpha-helical to beta-sheeted state is observed with a complete loss of tertiary structure and proteolytic activity. This is contrary to the observation that alcohol induces mostly the alpha-helical structure in proteins. The O-state of ervatamin B in 50% methanol at pH 3.0 has enhanced the stability towards GuHCl denaturation and shows a biphasic transition. This suggests the presence of two structural parts with different stabilities that unfold in steps. The thermal unfolding of ervatamin B in the O-state is also biphasic, which confirms the presence of two domains in the enzyme structure that unfold sequentially. The differential stabilization of the structural parts may also be a reflection of the differential stabilization of local conformations in methanol. Thermal unfolding of ervatamin B in the absence of alcohol is cooperative, both at neutral and low pH, and can be fitted to a two state model. However, at pH 2.0 the calorimetric profiles show two peaks, which indicates the presence of two structural domains in the enzyme with different thermal stabilities that are denatured more or less independently. With an increase in pH to 3.0 and 4.0, the shape of the DSC profiles change, and the two peaks converge to a predominant single peak. However, the ratio of van't Hoff enthalpy to calorimetric enthalpy is approximated to 2.0, indicating non-cooperativity in thermal unfolding.


Asunto(s)
Cisteína Endopeptidasas/química , Alcoholes , Rastreo Diferencial de Calorimetría , Dicroismo Circular , Estabilidad de Enzimas , Concentración de Iones de Hidrógeno , Metanol , Conformación Proteica , Desnaturalización Proteica , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Espectrometría de Fluorescencia , Temperatura , Termodinámica
20.
J Biochem Mol Biol ; 37(5): 586-96, 2004 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-15479623

RESUMEN

The folding of ervatamin C was investigated in the presence of various fluorinated and non-fluorinated organic solvents. The differences in the unfolding of the protein in the presence of various organic solvents and the stabilities of O-states were interpreted. At pH 2.0, non-fluorinated alkyl alcohols induced a switch from the native alpha-helix to a beta-sheet, contrary to the beta-sheet to alpha-helix conversion observed for many proteins. The magnitude of ellipticity at 215 nm, used as a measure of beta-content, was found to be dependent on the concentration of the alcohol. Under similar conditions of pH, fluorinated alcohol enhanced the intrinsic a-helicity of the protein molecule, whereas the addition of acetonitrile reduced the helical content. Ervatamin C exhibited high stability towards GuHCl induced unfolding in different O-states. Whereas the thermal unfolding of O-states was non-cooperative, contrary to the cooperativity seen in the absence of the organic solvents under similar conditions. Moreover, the differential scanning calorimetry endotherms of the protein acquired at pH 2.0 were deconvoluted into two distinct peaks, suggesting two cooperative transitions. With increase in pH, the shape of the thermogram changed markedly to exhibit a major and a minor transition. The appearance of two distinct peaks in the DSC together with the non-cooperative thermal transition of the protein in O-states indicates that the molecular structure of ervatamin C consists of two domains with different stabilities.


Asunto(s)
Cisteína Endopeptidasas/química , Rastreo Diferencial de Calorimetría/métodos , Dicroismo Circular/métodos , Guanidina/farmacología , Metanol/farmacología , Pliegue de Proteína , Estructura Secundaria de Proteína/efectos de los fármacos , Solventes/química , Temperatura , Trifluoroetanol/farmacología
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