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1.
J Biol Chem ; 300(3): 105682, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38272233

RESUMEN

Cyclotides are plant-derived disulfide-rich cyclic peptides that have a natural function in plant defense and potential for use as agricultural pesticides. Because of their highly constrained topology, they are highly resistant to thermal, chemical, or enzymatic degradation. However, the stability of cyclotides at alkaline pH for incubation times of longer than a few days is poorly studied but important since these conditions could be encountered in the environment, during storage or field application as insecticides. In this study, kalata B1 (kB1), the prototypical cyclotide, was engineered to improve its long-term stability and retain its insecticidal activity via point mutations. We found that substituting either Asn29 or Gly1 to lysine or leucine increased the stability of kB1 by twofold when incubated in an alkaline buffer (pH = 9.0) for 7 days, while retaining its insecticidal activity. In addition, when Gly1 was replaced with lysine or leucine, the mutants could be cyclized using an asparaginyl endopeptidase, in vitro with a yield of ∼90% within 5 min. These results demonstrate the potential to manufacture kB1 mutants with increased stability and insecticidal activity recombinantly or in planta. Overall, the discovery of mutants of kB1 that have enhanced stability could be useful in leading to longer term activity in the field as bioinsecticides.


Asunto(s)
Ciclotidas , Insecticidas , Oldenlandia , Ciclotidas/genética , Ciclotidas/farmacología , Ciclotidas/química , Insecticidas/química , Insecticidas/farmacología , Leucina , Lisina/genética , Mutagénesis , Proteínas de Plantas/metabolismo , Oldenlandia/química , Estabilidad Proteica , Animales , Línea Celular , Supervivencia Celular/efectos de los fármacos
2.
Chemistry ; 30(7): e202302909, 2024 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-37910861

RESUMEN

Nicotinic acetylcholine receptors (nAChRs) are drug targets for neurological diseases and disorders, but selective targeting of the large number of nAChR subtypes is challenging. Marine cone snail α-conotoxins are potent blockers of nAChRs and some have been engineered to achieve subtype selectivity. This engineering effort would benefit from rapid computational methods able to predict mutational energies, but current approaches typically require high-resolution experimental structures, which are not widely available for α-conotoxin complexes. Herein, five mutational energy prediction methods were benchmarked using crystallographic and mutational data on two acetylcholine binding protein/α-conotoxin systems. Molecular models were developed for six nAChR subtypes in complex with five α-conotoxins that were studied through 150 substitutions. The best method was a combination of FoldX and molecular dynamics simulations, resulting in a predictive Matthews Correlation Coefficient (MCC) of 0.68 (85 % accuracy). Novel α-conotoxin mutants designed using this method were successfully validated by experimental assay with improved pharmaceutical properties. This work paves the way for the rapid design of subtype-specific nAChR ligands and potentially accelerated drug development.


Asunto(s)
Conotoxinas , Receptores Nicotínicos , Conotoxinas/química , Receptores Nicotínicos/genética , Receptores Nicotínicos/química , Receptores Nicotínicos/metabolismo , Antagonistas Nicotínicos/química , Mutación , Simulación de Dinámica Molecular
3.
J Biol Chem ; 298(4): 101822, 2022 04.
Artículo en Inglés | MEDLINE | ID: mdl-35283188

RESUMEN

Cyclotides have a wide range of bioactivities relevant for agricultural and pharmaceutical applications. This large family of naturally occurring macrocyclic peptides is divided into three subfamilies, with the bracelet subfamily being the largest and comprising the most potent cyclotides reported to date. However, attempts to harness the natural bioactivities of bracelet cyclotides and engineer-optimized analogs have been hindered by a lack of understanding of the structural and functional role of their constituent residues, which has been challenging because bracelet cyclotides are difficult to produce synthetically. We recently established a facile strategy to make the I11L mutant of cyclotide hyen D that is as active as the parent peptide, enabling the subsequent production of a series of variants. In the current study, we report an alanine mutagenesis structure-activity study of [I11L] hyen D to probe the role of individual residues on peptide folding using analytical chromatography, on molecular function using surface plasmon resonance, and on therapeutic potential using cytotoxicity assays. We found that Glu-6 and Thr-15 are critical for maintaining the structure of bracelet cyclotides and that hydrophobic residues in loops 2 and 3 are essential for membrane binding and cytotoxic activity, findings that are distinct from the structural and functional characteristics determined for other cyclotide subfamilies. In conclusion, this is the first report of a mutagenesis scan conducted on a bracelet cyclotide, offering insights into their function and supporting future efforts to engineer bracelet cyclotides for biotechnological applications.


Asunto(s)
Ciclotidas , Ciclotidas/química , Ciclotidas/genética , Ciclotidas/toxicidad , Interacciones Hidrofóbicas e Hidrofílicas , Mutagénesis , Unión Proteica/genética
4.
J Biol Chem ; 298(10): 102413, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-36007611

RESUMEN

Cyclotides and acyclic versions of cyclotides (acyclotides) are peptides involved in plant defense. These peptides contain a cystine knot motif formed by three interlocked disulfide bonds, with the main difference between the two classes being the presence or absence of a cyclic backbone, respectively. The insecticidal activity of cyclotides is well documented, but no study to date explores the insecticidal activity of acyclotides. Here, we present the first in vivo evaluation of the insecticidal activity of acyclotides from Rinorea bengalensis on the vinegar fly Drosophila melanogaster. Of a group of structurally comparable acyclotides, ribe 31 showed the most potent toxicity when fed to D. melanogaster. We screened a range of acyclotides and cyclotides and found their toxicity toward human red blood cells was substantially lower than toward insect cells, highlighting their selectivity and potential for use as bioinsecticides. Our confocal microscopy experiments indicated their cytotoxicity is likely mediated via membrane disruption. Furthermore, our surface plasmon resonance studies suggested ribe 31 preferentially binds to membranes containing phospholipids with phosphatidyl-ethanolamine headgroups. Despite having an acyclic backbone, we determined the three-dimensional NMR solution structure of ribe 31 is similar to that of cyclotides. In summary, our results suggest that, with further optimization, ribe 31 could have applications as an insecticide due to its potent in vivo activity against D. melanogaster. More broadly, this work advances the field by demonstrating that acyclotides are more common than previously thought, have potent insecticidal activity, and have the advantage of potentially being more easily manufactured than cyclotides.


Asunto(s)
Ciclotidas , Drosophila melanogaster , Insecticidas , Proteínas de Plantas , Violaceae , Animales , Humanos , Secuencia de Aminoácidos , Ciclotidas/química , Ciclotidas/aislamiento & purificación , Ciclotidas/farmacología , Drosophila melanogaster/efectos de los fármacos , Insecticidas/química , Insecticidas/aislamiento & purificación , Insecticidas/farmacología , Proteínas de Plantas/química , Proteínas de Plantas/aislamiento & purificación , Proteínas de Plantas/farmacología , Violaceae/química , Eritrocitos/efectos de los fármacos
5.
Cell Mol Life Sci ; 79(12): 606, 2022 Nov 27.
Artículo en Inglés | MEDLINE | ID: mdl-36436181

RESUMEN

Lactate dehydrogenase 5 (LDH5) is overexpressed in many cancers and is a potential target for anticancer therapy due to its role in aerobic glycolysis. Small-molecule drugs have been developed as competitive inhibitors to bind substrate/cofactor sites of LDH5, but none reached the clinic to date. Recently, we designed the first LDH5 non-competitive inhibitor, cGmC9, a peptide that inhibits protein-protein interactions required for LDH5 enzymatic activity. Peptides are gaining a large interest as anticancer agents to modulate intracellular protein-protein interactions not targetable by small molecules; however, delivery of these peptides to the cytosol, where LDH5 and other anticancer targets are located, remains a challenge for this class of therapeutics. In this study, we focused on the cellular internalisation of cGmC9 to achieve LDH5 inhibition in the cytosol. We designed cGmC9 analogues and compared them for LDH5 inhibition, cellular uptake, toxicity, and antiproliferation against a panel of cancer cell lines. The lead analogue, [R/r]cGmC9, specifically impairs proliferation of cancer cell lines with high glycolytic profiles. Proteomics analysis showed expected metabolic changes in response to decreased glycolysis. This is the first report of a peptide-based LDH5 inhibitor able to modulate cancer metabolism and kill cancer cells that are glycolytic. The current study demonstrates the potential of using peptides as inhibitors of intracellular protein-protein interactions relevant for cancer pathways and shows that active peptides can be rationally designed to improve their cell permeation.


Asunto(s)
L-Lactato Deshidrogenasa , Neoplasias , Humanos , Lactato Deshidrogenasa 5 , Péptidos/farmacología , Neoplasias/tratamiento farmacológico , Proliferación Celular
6.
Mar Drugs ; 21(3)2023 Feb 25.
Artículo en Inglés | MEDLINE | ID: mdl-36976203

RESUMEN

The venom of marine cone snails is mainly composed of peptide toxins called conopeptides, among which conotoxins represent those that are disulfide-rich. Publications on conopeptides frequently state that conopeptides attract considerable interest for their potent and selective activity, but there has been no analysis yet that formally quantifies the popularity of the field. We fill this gap here by providing a bibliometric analysis of the literature on cone snail toxins from 2000 to 2022. Our analysis of 3028 research articles and 393 reviews revealed that research in the conopeptide field is indeed prolific, with an average of 130 research articles per year. The data show that the research is typically carried out collaboratively and worldwide, and that discoveries are truly a community-based effort. An analysis of the keywords provided with each article revealed research trends, their evolution over the studied period, and important milestones. The most employed keywords are related to pharmacology and medicinal chemistry. In 2004, the trend in keywords changed, with the pivotal event of that year being the approval by the FDA of the first peptide toxin drug, ziconotide, a conopeptide, for the treatment of intractable pain. The corresponding research article is among the top ten most cited articles in the conopeptide literature. From the time of that article, medicinal chemistry aiming at engineering conopeptides to treat neuropathic pain ramped up, as seen by an increased focus on topological modifications (e.g., cyclization), electrophysiology, and structural biology.


Asunto(s)
Conotoxinas , Caracol Conus , Animales , Caracol Conus/química , Conotoxinas/farmacología , Conotoxinas/química , Péptidos/farmacología , Péptidos/uso terapéutico , Péptidos/química , Caracoles
7.
Proc Natl Acad Sci U S A ; 117(21): 11399-11408, 2020 05 26.
Artículo en Inglés | MEDLINE | ID: mdl-32398368

RESUMEN

Spiders are one of the most successful venomous animals, with more than 48,000 described species. Most spider venoms are dominated by cysteine-rich peptides with a diverse range of pharmacological activities. Some spider venoms contain thousands of unique peptides, but little is known about the mechanisms used to generate such complex chemical arsenals. We used an integrated transcriptomic, proteomic, and structural biology approach to demonstrate that the lethal Australian funnel-web spider produces 33 superfamilies of venom peptides and proteins. Twenty-six of the 33 superfamilies are disulfide-rich peptides, and we show that 15 of these are knottins that contribute >90% of the venom proteome. NMR analyses revealed that most of these disulfide-rich peptides are structurally related and range in complexity from simple to highly elaborated knottin domains, as well as double-knot toxins, that likely evolved from a single ancestral toxin gene.


Asunto(s)
Proteínas de Artrópodos/química , Proteínas de Artrópodos/genética , Venenos de Araña/química , Animales , Proteínas de Artrópodos/análisis , Australia , Dípteros/efectos de los fármacos , Disulfuros , Evolución Molecular , Femenino , Perfilación de la Expresión Génica , Espectrometría de Masas , Péptidos/análisis , Péptidos/química , Péptidos/genética , Filogenia , Conformación Proteica , Proteómica/métodos , Venenos de Araña/genética , Venenos de Araña/toxicidad , Arañas/genética
8.
Nature ; 538(7625): 329-335, 2016 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-27626386

RESUMEN

Naturally occurring, pharmacologically active peptides constrained with covalent crosslinks generally have shapes that have evolved to fit precisely into binding pockets on their targets. Such peptides can have excellent pharmaceutical properties, combining the stability and tissue penetration of small-molecule drugs with the specificity of much larger protein therapeutics. The ability to design constrained peptides with precisely specified tertiary structures would enable the design of shape-complementary inhibitors of arbitrary targets. Here we describe the development of computational methods for accurate de novo design of conformationally restricted peptides, and the use of these methods to design 18-47 residue, disulfide-crosslinked peptides, a subset of which are heterochiral and/or N-C backbone-cyclized. Both genetically encodable and non-canonical peptides are exceptionally stable to thermal and chemical denaturation, and 12 experimentally determined X-ray and NMR structures are nearly identical to the computational design models. The computational design methods and stable scaffolds presented here provide the basis for development of a new generation of peptide-based drugs.


Asunto(s)
Diseño Asistido por Computadora , Diseño de Fármacos , Péptidos/química , Péptidos/síntesis química , Estabilidad Proteica , Secuencias de Aminoácidos , Cristalografía por Rayos X , Ciclización , Disulfuros/química , Calor , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Péptidos/genética , Péptidos Cíclicos/química , Péptidos Cíclicos/genética , Desnaturalización Proteica , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Estereoisomerismo
9.
J Biol Chem ; 295(32): 10911-10925, 2020 08 07.
Artículo en Inglés | MEDLINE | ID: mdl-32414842

RESUMEN

Cyclotides are plant-derived peptides characterized by an ∼30-amino acid-long cyclic backbone and a cystine knot motif. Cyclotides have diverse bioactivities, and their cytotoxicity has attracted significant attention for its potential anticancer applications. Hybanthus enneaspermus (Linn) F. Muell is a medicinal herb widely used in India as a libido enhancer, and a previous study has reported that it may contain cyclotides. In the current study, we isolated 11 novel cyclotides and 1 known cyclotide (cycloviolacin O2) from H. enneaspermus and used tandem MS to determine their amino acid sequences. We found that among these cyclotides, hyen C comprises a unique sequence in loops 1, 2, 3, 4, and 6 compared with known cyclotides. The most abundant cyclotide in this plant, hyen D, had anticancer activity comparable to that of cycloviolacin O2, one of the most cytotoxic known cyclotides. We also provide mechanistic insights into how these novel cyclotides interact with and permeabilize cell membranes. Results from surface plasmon resonance experiments revealed that hyen D, E, L, and M and cycloviolacin O2 preferentially interact with model lipid membranes that contain phospholipids with phosphatidyl-ethanolamine headgroups. The results of a lactate dehydrogenase assay indicated that exposure to these cyclotides compromises cell membrane integrity. Using live-cell imaging, we show that hyen D induces rapid membrane blebbing and cell necrosis. Cyclotide-membrane interactions correlated with the observed cytotoxicity, suggesting that membrane permeabilization and disintegration underpin cyclotide cytotoxicity. These findings broaden our knowledge on the indigenous Indian herb H. enneaspermus and have uncovered cyclotides with potential anticancer activity.


Asunto(s)
Antineoplásicos Fitogénicos/farmacología , Ciclotidas/farmacología , Descubrimiento de Drogas , Plantas Medicinales/química , Violaceae/química , Secuencia de Aminoácidos , Antineoplásicos Fitogénicos/química , Antineoplásicos Fitogénicos/aislamiento & purificación , Línea Celular Tumoral , Ciclotidas/química , Ciclotidas/aislamiento & purificación , Ensayos de Selección de Medicamentos Antitumorales , Humanos , Proteínas de Plantas/química , Proteínas de Plantas/aislamiento & purificación , Proteínas de Plantas/farmacología , Resonancia por Plasmón de Superficie , Espectrometría de Masas en Tándem
10.
Chem Rev ; 119(21): 11510-11549, 2019 11 13.
Artículo en Inglés | MEDLINE | ID: mdl-31633928

RESUMEN

The venom of the marine predatory cone snails (genus Conus) has evolved for prey capture and defense, providing the basis for survival and rapid diversification of the now estimated 750+ species. A typical Conus venom contains hundreds to thousands of bioactive peptides known as conotoxins. These mostly disulfide-rich and well-structured peptides act on a wide range of targets such as ion channels, G protein-coupled receptors, transporters, and enzymes. Conotoxins are of interest to neuroscientists as well as drug developers due to their exquisite potency and selectivity, not just against prey but also mammalian targets, thereby providing a rich source of molecular probes and therapeutic leads. The rise of integrated venomics has accelerated conotoxin discovery with now well over 10,000 conotoxin sequences published. However, their structural and pharmacological characterization lags considerably behind. In this review, we highlight the diversity of new conotoxins uncovered since 2014, their three-dimensional structures and folds, novel chemical approaches to their syntheses, and their value as pharmacological tools to unravel complex biology. Additionally, we discuss challenges and future directions for the field.


Asunto(s)
Conotoxinas/química , Conotoxinas/metabolismo , Secuencia de Aminoácidos , Animales , Conotoxinas/clasificación , Caracol Conus/metabolismo , Humanos , Modelos Moleculares , Conformación Proteica , Relación Estructura-Actividad
11.
Mar Drugs ; 19(9)2021 Aug 26.
Artículo en Inglés | MEDLINE | ID: mdl-34564144

RESUMEN

The α4ß2 nAChR is implicated in a range of diseases and disorders including nicotine addiction, epilepsy and Parkinson's and Alzheimer's diseases. Designing α4ß2 nAChR selective inhibitors could help define the role of the α4ß2 nAChR in such disease states. In this study, we aimed to modify globular and ribbon α-conotoxin GID to selectively target the α4ß2 nAChR through competitive inhibition of the α4(+)ß2(-) or α4(+)α4(-) interfaces. The binding modes of the globular α-conotoxin [γ4E]GID with rat α3ß2, α4ß2 and α7 nAChRs were deduced using computational methods and were validated using published experimental data. The binding mode of globular [γ4E]GID at α4ß2 nAChR can explain the experimental mutagenesis data, suggesting that it could be used to design GID variants. The predicted mutational energy results showed that globular [γ4E]GID is optimal for binding to α4ß2 nAChR and its activity could not likely be further improved through amino-acid substitutions. The binding mode of ribbon GID with the (α4)3(ß2)2 nAChR was deduced using the information from the cryo-electron structure of (α4)3(ß2)2 nAChR and the binding mode of ribbon AuIB. The program FoldX predicted the mutational energies of ribbon [γ4E]GID at the α4(+)α4(-) interface, and several ribbon[γ4E]GID mutants were suggested to have desirable properties to inhibit (α4)3(ß2)2 nAChR.


Asunto(s)
Conotoxinas/química , Antagonistas Nicotínicos/química , Receptores Nicotínicos/química , Animales , Sitios de Unión , Humanos , Modelos Moleculares , Mutagénesis , Mutación , Neuronas , Ratas , Relación Estructura-Actividad
12.
J Nat Prod ; 83(6): 1817-1828, 2020 06 26.
Artículo en Inglés | MEDLINE | ID: mdl-32437150

RESUMEN

Viola is the largest genus in the Violaceae plant family and is known for its ubiquitous natural production of cyclotides. Many Viola species are used as medicinal herbs across Asia and are often consumed by humans in teas for the treatment of diseases, including ulcers and asthma. Previous studies reported the isolation of cyclotides from Viola species in many countries in the hope of discovering novel compounds with anti-cancer activities; however, Viola species from Vietnam have not been investigated to date. Here, the discovery of cyclotides from three Viola species (V. arcuata, V. tonkinensis, and V. austrosinensis) collected in the northern mountainous region of Vietnam is reported. Ten cyclotides were isolated from these three Viola species: four are novel and six were previously reported to be expressed in other plants. The structures of three of the new bracelet cyclotides are similar to that of cycloviolacin O2. Because cycloviolacin O2 has previously been shown to have potent activity against a wide range of cancer cell lines including HeLa (human cervical cancer cells) and PC-3 (human prostate cancer cells), the cancer cytotoxicity of the cyclotides isolated from V. arcuata was assessed. All tested cyclotides were cytotoxic against cancer cells, albeit to varying degrees. The sequences discovered in this study significantly expand the understanding of cyclotide diversity, especially in comparison with other cyclotides found in plants from the Asian region.


Asunto(s)
Antineoplásicos Fitogénicos/química , Antineoplásicos Fitogénicos/farmacología , Ciclotidas/química , Ciclotidas/farmacología , Viola/química , Secuencia de Aminoácidos , Biodiversidad , Línea Celular Tumoral , Ensayos de Selección de Medicamentos Antitumorales , Femenino , Células HeLa , Hemólisis/efectos de los fármacos , Humanos , Masculino , Estructura Molecular , Extractos Vegetales/química , Extractos Vegetales/farmacología , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Vietnam
13.
J Biol Chem ; 293(41): 15777-15789, 2018 10 12.
Artículo en Inglés | MEDLINE | ID: mdl-30131340

RESUMEN

The relaxin-3 neuropeptide activates the relaxin family peptide 3 (RXFP3) receptor to modulate stress, appetite, and cognition. RXFP3 shows promise as a target for treating neurological disorders, but realization of its clinical potential requires development of smaller RXFP3-specific drugs that can penetrate the blood-brain barrier. Designing such drugs is challenging and requires structural knowledge of agonist- and antagonist-binding modes. Here, we used structure-activity data for relaxin-3 and a peptide RXFP3 antagonist termed R3 B1-22R to guide receptor mutagenesis and develop models of their binding modes. RXFP3 residues were alanine-substituted individually and in combination and tested in cell-based binding and functional assays to refine models of agonist and antagonist binding to active- and inactive-state homology models of RXFP3, respectively. These models suggested that both agonists and antagonists interact with RXFP3 via similar residues in their B-chain central helix. The models further suggested that the B-chain Trp27 inserts into the binding pocket of RXFP3 and interacts with Trp138 and Lys271, the latter through a salt bridge with the C-terminal carboxyl group of Trp27 in relaxin-3. R3 B1-22R, which does not contain Trp27, used a non-native Arg23 residue to form cation-π and salt-bridge interactions with Trp138 and Glu141 in RXFP3, explaining a key contribution of Arg23 to affinity. Overall, relaxin-3 and R3 B1-22R appear to share similar binding residues but may differ in binding modes, leading to active and inactive RXFP3 conformational states, respectively. These mechanistic insights may assist structure-based drug design of smaller relaxin-3 mimetics to manage neurological disorders.


Asunto(s)
Péptidos/metabolismo , Receptores Acoplados a Proteínas G/metabolismo , Relaxina/metabolismo , Sitios de Unión , Células HEK293 , Humanos , Simulación del Acoplamiento Molecular , Mutagénesis Sitio-Dirigida , Péptidos/síntesis química , Péptidos/química , Unión Proteica , Receptores Acoplados a Proteínas G/agonistas , Receptores Acoplados a Proteínas G/antagonistas & inhibidores , Receptores Acoplados a Proteínas G/genética , Relaxina/síntesis química , Relaxina/química , Electricidad Estática
14.
Bioinformatics ; 34(6): 1074-1076, 2018 03 15.
Artículo en Inglés | MEDLINE | ID: mdl-29069336

RESUMEN

Summary: ArachnoServer is a manually curated database that consolidates information on the sequence, structure, function and pharmacology of spider-venom toxins. Although spider venoms are complex chemical arsenals, the primary constituents are small disulfide-bridged peptides that target neuronal ion channels and receptors. Due to their high potency and selectivity, these peptides have been developed as pharmacological tools, bioinsecticides and drug leads. A new version of ArachnoServer (v3.0) has been developed that includes a bioinformatics pipeline for automated detection and analysis of peptide toxin transcripts in assembled venom-gland transcriptomes. ArachnoServer v3.0 was updated with the latest sequence, structure and functional data, the search-by-mass feature has been enhanced, and toxin cards provide additional information about each mature toxin. Availability and implementation: http://arachnoserver.org. Contact: support@arachnoserver.org. Supplementary information: Supplementary data are available at Bioinformatics online.


Asunto(s)
Venenos de Araña/química , Animales , Automatización de Laboratorios , Disulfuros/química , Proteínas de Insectos/química , Péptidos/química , Venenos de Araña/análisis
15.
J Biol Chem ; 292(41): 17101-17112, 2017 10 13.
Artículo en Inglés | MEDLINE | ID: mdl-28851841

RESUMEN

Conotoxin GeXIVA inhibits the α9α10 nicotinic acetylcholine receptor (nAChR) and is analgesic in animal models of pain. α-Conotoxins have four cysteines that can have three possible disulfide connectivities: globular (CysI-CysIII and CysII-CysIV), ribbon (CysI-CysIV and CysII-CysIII), or bead (CysI-CysII and CysIII-CysIV). Native α-conotoxins preferably adopt the globular connectivity, and previous studies of α-conotoxins have focused on the globular isomers as the ribbon and bead isomers typically have lower potency at nAChRs than the globular form. A recent report showed that the bead and ribbon isomers of GeXIVA are more potent than the globular isomer, with low nanomolar half-maximal inhibitory concentrations (IC50). Despite this high potency, the therapeutic potential of GeXIVA is limited, because like most peptides, it is susceptible to proteolytic degradation and is challenging to synthesize in high yield. Here we used backbone cyclization as a strategy to improve the folding yield as well as increase the serum stability of ribbon GeXIVA while preserving activity at the α9α10 nAChR. Specifically, cyclization of ribbon GeXIVA with a two-residue linker maintained the biological activity at the human α9α10 nAChR and improved stability in human serum. Short linkers led to selective formation of the ribbon disulfide isomer without requiring orthogonal protection. Overall, this study highlights the value of backbone cyclization in directing folding, improving yields, and stabilizing conotoxins with therapeutic potential.


Asunto(s)
Analgésicos/química , Conotoxinas/química , Pliegue de Proteína , Resonancia Magnética Nuclear Biomolecular , Dominios Proteicos , Estructura Secundaria de Proteína
16.
Mar Drugs ; 16(4)2018 Apr 05.
Artículo en Inglés | MEDLINE | ID: mdl-29621159

RESUMEN

A diverse range of predatory marine gastropods produce toxins, yet most of these molecules remain uncharacterized. Conus species have received the most attention from researchers, leading to several conopeptides reaching clinical trials. This review aims to summarize what is known about bioactive compounds isolated from species of neglected marine gastropods, especially in the Turridae, Terebridae, Babyloniidae, Muricidae, Buccinidae, Colubrariidae, Nassariidae, Cassidae, and Ranellidae families. Multiple species have been reported to contain bioactive compounds with potential toxic activity, but most of these compounds have not been characterized or even clearly identified. The bioactive properties and potential applications of echotoxins and related porins from the Ranellidae family are discussed in more detail. Finally, the review concludes with a call for research on understudied species.


Asunto(s)
Organismos Acuáticos/química , Productos Biológicos/química , Conotoxinas/química , Caracol Conus/química , Porinas/química , Animales , Organismos Acuáticos/clasificación , Organismos Acuáticos/fisiología , Productos Biológicos/aislamiento & purificación , Productos Biológicos/farmacología , Investigación Biomédica/tendencias , Biotecnología/métodos , Biotecnología/tendencias , Clasificación , Conotoxinas/aislamiento & purificación , Conotoxinas/farmacología , Caracol Conus/clasificación , Caracol Conus/fisiología , Conformación Molecular , Porinas/aislamiento & purificación , Porinas/farmacología , Conducta Predatoria
17.
Proc Natl Acad Sci U S A ; 112(30): E4026-35, 2015 Jul 28.
Artículo en Inglés | MEDLINE | ID: mdl-26170295

RESUMEN

We identified a previously unidentified conotoxin gene from Conus generalis whose precursor signal sequence has high similarity to the O1-gene conotoxin superfamily. The predicted mature peptide, αO-conotoxin GeXIVA (GeXIVA), has four Cys residues, and its three disulfide isomers were synthesized. Previously pharmacologically characterized O1-superfamily peptides, exemplified by the US Food and Drug Administration-approved pain medication, ziconotide, contain six Cys residues and are calcium, sodium, or potassium channel antagonists. However, GeXIVA did not inhibit calcium channels but antagonized nicotinic AChRs (nAChRs), most potently on the α9α10 nAChR subtype (IC50 = 4.6 nM). Toxin blockade was voltage-dependent, and kinetic analysis of toxin dissociation indicated that the binding site of GeXIVA does not overlap with the binding site of the competitive antagonist α-conotoxin RgIA. Surprisingly, the most active disulfide isomer of GeXIVA is the bead isomer, comprising, according to NMR analysis, two well-resolved but uncoupled disulfide-restrained loops. The ribbon isomer is almost as potent but has a more rigid structure built around a short 310-helix. In contrast to most α-conotoxins, the globular isomer is the least potent and has a flexible, multiconformational nature. GeXIVA reduced mechanical hyperalgesia in the rat chronic constriction injury model of neuropathic pain but had no effect on motor performance, warranting its further investigation as a possible therapeutic agent.


Asunto(s)
Conotoxinas/química , Caracol Conus/química , Antagonistas Nicotínicos/química , Receptores Nicotínicos/química , Amidas/química , Secuencia de Aminoácidos , Animales , Sitios de Unión , Canales de Calcio/química , Clonación Molecular , Retículo Endoplásmico/metabolismo , Hiperalgesia/tratamiento farmacológico , Concentración 50 Inhibidora , Masculino , Modelos Moleculares , Datos de Secuencia Molecular , Neuralgia/terapia , Oocitos/citología , Conformación Proteica , Señales de Clasificación de Proteína , Ratas , Ratas Sprague-Dawley , Xenopus laevis
18.
J Biol Chem ; 290(15): 9855-62, 2015 Apr 10.
Artículo en Inglés | MEDLINE | ID: mdl-25713061

RESUMEN

α-Conotoxin LvIA (α-CTx LvIA) is a small peptide from the venom of the carnivorous marine gastropod Conus lividus and is the most selective inhibitor of α3ß2 nicotinic acetylcholine receptors (nAChRs) known to date. It can distinguish the α3ß2 nAChR subtype from the α6ß2* (* indicates the other subunit) and α3ß4 nAChR subtypes. In this study, we performed mutational studies to assess the influence of residues of the ß2 subunit versus those of the ß4 subunit on the binding of α-CTx LvIA. Although two ß2 mutations, α3ß2[F119Q] and α3ß2[T59K], strongly enhanced the affinity of LvIA, the ß2 mutation α3ß2[V111I] substantially reduced the binding of LvIA. Increased activity of LvIA was also observed when the ß2-T59L mutant was combined with the α3 subunit. There were no significant difference in inhibition of α3ß2[T59I], α3ß2[Q34A], and α3ß2[K79A] nAChRs when compared with wild-type α3ß2 nAChR. α-CTx LvIA displayed slower off-rate kinetics at α3ß2[F119Q] and α3ß2[T59K] than at the wild-type receptor, with the latter mutant having the most pronounced effect. Taken together, these data provide evidence that the ß2 subunit contributes to α-CTx LvIA binding and selectivity. The results demonstrate that Val(111) is critical and facilitates LvIA binding; this position has not previously been identified as important to binding of other 4/7 framework α-conotoxins. Thr(59) and Phe(119) of the ß2 subunit appear to interfere with LvIA binding, and their replacement by the corresponding residues of the ß4 subunit leads to increased affinity.


Asunto(s)
Aminoácidos/metabolismo , Conotoxinas/metabolismo , Péptidos/metabolismo , Receptores Nicotínicos/metabolismo , Secuencia de Aminoácidos , Aminoácidos/química , Aminoácidos/genética , Animales , Sitios de Unión/genética , Unión Competitiva , Conotoxinas/química , Conotoxinas/farmacología , Caracol Conus/metabolismo , Relación Dosis-Respuesta a Droga , Femenino , Potenciales de la Membrana/efectos de los fármacos , Modelos Moleculares , Datos de Secuencia Molecular , Mutación , Oocitos/metabolismo , Oocitos/fisiología , Técnicas de Placa-Clamp , Péptidos/química , Péptidos/farmacología , Unión Proteica , Estructura Terciaria de Proteína , Subunidades de Proteína/química , Subunidades de Proteína/genética , Subunidades de Proteína/metabolismo , Ratas , Receptores Nicotínicos/genética , Receptores Nicotínicos/fisiología , Homología de Secuencia de Aminoácido , Xenopus laevis
19.
Mol Biol Evol ; 32(2): 392-405, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25376175

RESUMEN

Cyclic proteins have evolved for millions of years across all kingdoms of life to confer structural stability over their acyclic counterparts while maintaining intrinsic functional properties. Here, we show that cyclic miniproteins (or peptides) from Momordica (Cucurbitaceae) seeds evolved in species that diverged from an African ancestor around 19 Ma. The ability to achieve head-to-tail cyclization of Momordica cyclic peptides appears to have been acquired through a series of mutations in their acyclic precursor coding sequences following recent and independent gene expansion event(s). Evolutionary analysis of Momordica cyclic peptides reveals sites that are under selection, highlighting residues that are presumably constrained for maintaining their function as potent trypsin inhibitors. Molecular dynamics of Momordica cyclic peptides in complex with trypsin reveals site-specific residues involved in target binding. In a broader context, this study provides a basis for selecting Momordica species to further investigate the biosynthesis of the cyclic peptides and for constructing libraries that may be screened against evolutionarily related serine proteases implicated in human diseases.


Asunto(s)
Momordica/metabolismo , Péptidos Cíclicos/metabolismo , Proteínas de Plantas/metabolismo , Semillas/metabolismo , Evolución Biológica , Datos de Secuencia Molecular , Momordica/genética , Péptidos Cíclicos/genética , Proteínas de Plantas/genética , Inhibidores de Serina Proteinasa/metabolismo
20.
Biotechnol Bioeng ; 113(10): 2202-12, 2016 10.
Artículo en Inglés | MEDLINE | ID: mdl-27093300

RESUMEN

Disulfide-rich peptides isolated from cone snails are of great interest as drug leads due to their high specificity and potency toward therapeutically relevant ion channels and receptors. They commonly contain the inhibitor cystine knot (ICK) motif comprising three disulfide bonds forming a knotted core. Here we report the successful enzymatic backbone cyclization of an ICK-containing peptide κ-PVIIA, a 27-amino acid conopeptide from Conus purpurascens, using a mutated version of the bacterial transpeptidase, sortase A. Although a slight loss of activity was observed compared to native κ-PVIIA, cyclic κ-PVIIA is a functional peptide that inhibits the Shaker voltage-gated potassium (Kv) channel. Molecular modeling suggests that the decrease in potency may be related to the loss of crucial, but previously unidentified electrostatic interactions between the N-terminus of the peptide and the Shaker channel. This hypothesis was confirmed by testing an N-terminally acetylated κ-PVIIA, which shows a similar decrease in activity. We also investigated the conformational dynamics and hydrogen bond network of cyc-PVIIA, both of which are important factors to be considered for successful cyclization of peptides. We found that cyc-PVIIA has the same conformational dynamics, but different hydrogen bond network compared to those of κ-PVIIA. The ability to efficiently cyclize ICK peptides using sortase A will enable future protein engineering for this class of peptides and may help in the development of novel therapeutic molecules. Biotechnol. Bioeng. 2016;113: 2202-2212. © 2016 Wiley Periodicals, Inc.


Asunto(s)
Aminoaciltransferasas/ultraestructura , Proteínas Bacterianas/ultraestructura , Conotoxinas/química , Caracol Conus/metabolismo , Cisteína Endopeptidasas/ultraestructura , Cistina/química , Modelos Moleculares , Canales de Potasio/ultraestructura , Aminoaciltransferasas/química , Animales , Proteínas Bacterianas/química , Sitios de Unión , Cisteína Endopeptidasas/química , Disulfuros/química , Activación Enzimática , Modelos Químicos , Péptidos/química , Canales de Potasio/química , Unión Proteica , Conformación Proteica , Pliegue de Proteína
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