Food web collapse and regime shift following goldfish introduction in permanent ponds.

In a global context of invasive alien species (IAS), native predators are often eradicated by functionally different IAS, which may induce complex cascading consequences on ecosystem functioning because of the key role predators play in structuring communities and stabilizing food webs. In permanent ponds, the most abundant freshwater systems on Earth, global human-mediated introductions of alien omnivores such as the pet trade goldfish are driving broad-scale patterns of native predators' exclusion, but cascading consequences on food web structure and functioning are critically understudied. We compared food webs of naturally fishless ponds versus ponds where dominant native predators (newts) had been extirpated by invasive goldfish within the last decade. Integrating community-wide isotopic, taxonomic and functional traits approaches, our study reveals that pond food webs collapsed in both vertical and horizontal dimensions following goldfish introduction and the associated exclusion of native predators. Consumer taxonomic diversity was drastically reduced, essentially deprived of amphibians as well as predatory and mobile macroinvertebrates to the profit of burrowing, lower trophic level consumers (detritivores). Changes in community structure and function underlined a regime shift from a macrophyte-dominated system mainly characterized by benthic primary production (periphyton), to a macrophyte-depleted state of ponds hosting communities mainly associated with phytoplankton primary production and detritus accumulation, with higher tolerance to eutrophication and low dissolved oxygen concentration. Results underline major impacts of widely introduced omnivores such as the goldfish on the functioning of pond ecosystems with potentially dramatic consequences on the key ecosystem services they deliver, such as global biodiversity support or water quality improvement. They also shed light on the key role of submerged aquatic vegetation in supporting diverse communities and complex food webs in shallow lentic systems and call for urgent consideration of threats posed by IAS on ponds' ecosystems by managers and policymakers.

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.

Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years. Neither male sex organs nor meiosis have ever been observed in these microscopic animals: oocytes are formed through mitotic divisions, with no reduction of chromosome number and no indication of chromosome pairing. However, current evidence does not exclude that they may engage in sex on rare, cryptic occasions. Here we report the genome of a bdelloid rotifer, Adineta vaga (Davis, 1873), and show that its structure is incompatible with conventional meiosis. At gene scale, the genome of A. vaga is tetraploid and comprises both anciently duplicated segments and less divergent allelic regions. However, in contrast to sexual species, the allelic regions are rearranged and sometimes even found on the same chromosome. Such structure does not allow meiotic pairing; instead, we find abundant evidence of gene conversion, which may limit the accumulation of deleterious mutations in the absence of meiosis. Gene families involved in resistance to oxidation, carbohydrate metabolism and defence against transposons are significantly expanded, which may explain why transposable elements cover only 3% of the assembled sequence. Furthermore, 8% of the genes are likely to be of non-metazoan origin and were probably acquired horizontally. This apparent convergence between bdelloids and prokaryotes sheds new light on the evolutionary significance of sex.

Assessing the diet and trophic level of marine fauna in a fishing ground subject to discarding activity using stable isotopes.

Discarding practices have become a source of concern for the perennation of marine resources, prompting efforts of discard reduction around the globe. However, little is known about the fate of discards in marine environments. Discarding may provide food for various marine consumers, potentially affecting food web structure and stability. Yet, quantifying reliance upon discards is difficult because identity and frequency of discards may change according to multiple factors, and most previously used diet assessment techniques do not allow to assume consistency of feeding strategies over time. One currently untested hypothesis is that significant contribution of discards over time should reflect in increased trophic level (TL) of marine fauna, particularly in low TL consumers. Here, we explored this hypothesis by modeling the TL and assimilated diet of consumers living in fishing grounds subject to important discarding activity using stable isotope analysis. We found indications that benthic invertebrates and Chondrichthyes may depict a higher than expected TL, while other fish tend to depict similar to lower TL compared to global averages from the literature. Based on prior knowledge of discard consumption in the same area, stable isotope mixing models congruently revealed that discards may represent substantial portions of the assimilated diet of most benthic invertebrate macrofauna, cephalopods and Chondrichthyes. We highlight limitations and challenges of currently used diet assessment techniques to study discard consumption and stress that understanding their reintegration in marine food webs is crucial in the context of an ecosystem approach to fisheries management and to better understand the functioning of marine ecosystems subject to fishing.