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1.
J Cardiovasc Pharmacol ; 84(1): 10-17, 2024 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-38547512

RESUMEN

ABSTRACT: Cardiovascular disease (CVD) is the leading cause of morbidity and mortality globally. CVD and kidney disease are closely related, with kidney injury increasing CVD mortality. The pathogenesis of cardiovascular and renal diseases involves complex and diverse interactions between multiple extracellular and intracellular signaling molecules, among which transient receptor potential vanilloid 1 (TRPV1)/transient receptor potential ankyrin 1 (TRPA1) channels have received increasing attention. TRPV1 belongs to the vanilloid receptor subtype family of transient receptor potential ion channels, and TRPA1 belongs to the transient receptor potential channel superfamily. TRPV1/TRPA1 are jointly involved in the management of cardiovascular and renal diseases and play important roles in regulating vascular tension, promoting angiogenesis, antifibrosis, anti-inflammation, and antioxidation. The mechanism of TRPV1/TRPA1 is mainly related to regulation of intracellular calcium influx and release of nitric oxide and calcitonin gene-related peptide. Therefore, this study takes the TRPV1/TRPA1 channel as the research object, analyzes and summarizes the process and mechanism of TRPV1/TRPA1 affecting cardiovascular and renal diseases, and lays a foundation for the treatment of cardiorenal diseases.


Asunto(s)
Enfermedades Cardiovasculares , Enfermedades Renales , Transducción de Señal , Canal Catiónico TRPA1 , Canales Catiónicos TRPV , Humanos , Canal Catiónico TRPA1/metabolismo , Canales Catiónicos TRPV/metabolismo , Enfermedades Cardiovasculares/metabolismo , Enfermedades Cardiovasculares/tratamiento farmacológico , Enfermedades Cardiovasculares/fisiopatología , Animales , Enfermedades Renales/metabolismo , Enfermedades Renales/fisiopatología , Sistema Cardiovascular/metabolismo , Sistema Cardiovascular/fisiopatología , Sistema Cardiovascular/efectos de los fármacos , Riñón/metabolismo , Riñón/fisiopatología , Señalización del Calcio/efectos de los fármacos , Fármacos Cardiovasculares/uso terapéutico , Fármacos Cardiovasculares/farmacología
2.
Clin Lab ; 70(6)2024 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-38868866

RESUMEN

BACKGROUND: The goal was to analyze serums of GDM patients and healthy pregnant women using HPLC-MS and preliminarily screen differential metabolites by metabolomics. METHOD: Sixty pregnant women who underwent elective cesarean section at term in Dongguan Dalang Hospital from January 2023 to April 2023 were selected and divided into the GDM group and healthy pregnancy group. Pre-pregnancy and pregnancy examination information, such as age, BMI, OGTT results, triglyceride, total cholesterol, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, and other clinical data were col-lected for statistical analysis. Non-targeted metabolomics of serum from 30 GDM patients and 30 healthy pregnant women were studied by HPLC-MS, and different ions were searched. The structures of differential metabolites were identified by HMDB database. The metabolic pathways of differential metabolites were analyzed by KEGG database. RESULTS: The OGTT result, pCO2, pO2, HCO3, BE, Apgar score, and bilirubin levels in the GDM group were higher than those in the healthy pregnancy group (p < 0.05). However, there were no significant differences in age, triglyceride, total cholesterol, newborn birth weight, newborn birth blood glucose, and blood gas pH between the two groups (all p > 0.05). Using p < 0.05 as the screening standard, 55 differential metabolites were identified in serum, mainly including fatty acyl, carboxylic acids and their derivatives, steroids and their derivatives, ketoacids and their derivatives, and pyrimidine nucleosides, etc., all of which were up-regulated or down-regulated to varying degrees. The 55 metabolites were mainly involved in the metabolism of pyrimidine, pyruvate, alanine, aspartic acid, glutamic acid, and arachidonic acid, glycolysis, and biosynthesis of unsaturated fatty acids. CONCLUSIONS: The discovery of these metabolites provides a theoretical basis for an indepth understanding of GDM pathogenesis. Non-targeted metabonomics analysis of blood metabonomics research technology has shown great potential value in the early diagnosis of obstetric diseases and the study of disease mechanisms.


Asunto(s)
Diabetes Gestacional , Metabolómica , Humanos , Femenino , Diabetes Gestacional/sangre , Diabetes Gestacional/diagnóstico , Diabetes Gestacional/metabolismo , Embarazo , Metabolómica/métodos , Adulto , Recién Nacido , Estudios de Casos y Controles , Cromatografía Líquida de Alta Presión/métodos , Biomarcadores/sangre
3.
Analyst ; 149(1): 212-220, 2023 Dec 18.
Artículo en Inglés | MEDLINE | ID: mdl-38018757

RESUMEN

The accurate and rapid detection of specific antibodies in blood is very important for efficient diagnosis and precise treatment. Conventional methods often suffer from time-consuming operations and/or a narrow detection range. In this work, for the rapid determination of bevacizumab in plasma, a series of chimeric hairpin DNA aptamer-based probes were designed by the modification, labeling and theoretical computation of an original aptamer. Then, the dissociation constant of the modified hairpin DNA to bevacizumab was measured and screened using microscale thermophoresis. The best chimeric hairpin DNA aptamer-based probe was then selected, and a one-step platform for the rapid determination of bevacizumab was constructed. This strategy has the advantages of being simple, fast and label-free. Because of the design and screening of the hairpin DNA, as well as the optimization of the concentration and electrochemical parameters, a low detection limit of 0.37 pM (0.054 ng mL-1) with a wide linear range (1 pM-1 µM) was obtained. Finally, the rationally constructed biosensor was successfully applied to the determination of bevacizumab in spiked samples, and it showed good accuracy and precision. This method is expected to truly realize accurate and rapid detection of bevacizumab and provides a new idea for the precise treatment of diseases.


Asunto(s)
Aptámeros de Nucleótidos , Técnicas Biosensibles , Bevacizumab , Técnicas Biosensibles/métodos , ADN , Sondas de ADN/genética , Límite de Detección , Técnicas Electroquímicas
4.
Sensors (Basel) ; 23(9)2023 Apr 23.
Artículo en Inglés | MEDLINE | ID: mdl-37177423

RESUMEN

Medical time series are sequential data collected over time that measures health-related signals, such as electroencephalography (EEG), electrocardiography (ECG), and intensive care unit (ICU) readings. Analyzing medical time series and identifying the latent patterns and trends that lead to uncovering highly valuable insights for enhancing diagnosis, treatment, risk assessment, and disease progression. However, data mining in medical time series is heavily limited by the sample annotation which is time-consuming and labor-intensive, and expert-depending. To mitigate this challenge, the emerging self-supervised contrastive learning, which has shown great success since 2020, is a promising solution. Contrastive learning aims to learn representative embeddings by contrasting positive and negative samples without the requirement for explicit labels. Here, we conducted a systematic review of how contrastive learning alleviates the label scarcity in medical time series based on PRISMA standards. We searched the studies in five scientific databases (IEEE, ACM, Scopus, Google Scholar, and PubMed) and retrieved 1908 papers based on the inclusion criteria. After applying excluding criteria, and screening at title, abstract, and full text levels, we carefully reviewed 43 papers in this area. Specifically, this paper outlines the pipeline of contrastive learning, including pre-training, fine-tuning, and testing. We provide a comprehensive summary of the various augmentations applied to medical time series data, the architectures of pre-training encoders, the types of fine-tuning classifiers and clusters, and the popular contrastive loss functions. Moreover, we present an overview of the different data types used in medical time series, highlight the medical applications of interest, and provide a comprehensive table of 51 public datasets that have been utilized in this field. In addition, this paper will provide a discussion on the promising future scopes such as providing guidance for effective augmentation design, developing a unified framework for analyzing hierarchical time series, and investigating methods for processing multimodal data. Despite being in its early stages, self-supervised contrastive learning has shown great potential in overcoming the need for expert-created annotations in the research of medical time series.


Asunto(s)
Aprendizaje , Factores de Tiempo , Minería de Datos , Bases de Datos Factuales
5.
J Am Acad Dermatol ; 86(6): 1236-1245, 2022 06.
Artículo en Inglés | MEDLINE | ID: mdl-35121075

RESUMEN

BACKGROUND: Systemic steroid therapies for Stevens-Johnson syndrome (SJS)/toxic epidermal necrolysis (TEN) have been challenged because of their limited benefits. Whether additional tumor necrosis factor (TNF) α inhibition provides an optimized approach remains unexplored. OBJECTIVE: To investigate the efficacy of TNF-α inhibition combined with a steroid to treat SJS/TEN and to identify potential biomarkers. METHODS: Twenty-five patients with SJS/TEN were recruited and divided into 2 groups: 10 patients received methylprednisolone and 15 patients received etanercept plus methylprednisolone. Serum levels of granzyme B, perforin, interferon-γ, interleukin (IL) 6, IL-15, IL-18, macrophage inflammatory protein 1α, macrophage inflammatory protein 1ß, and TNF-α were measured by multiplex cytokine analysis kits during the acute and resolution phases. RESULTS: Compared with the steroid monotherapy, the combination therapy significantly shortened the course of the initial steroid treatment and the duration of the acute stage, hospitalization stay, and skin re-epithelialization. Although both therapies significantly reduced IL-15 levels; the combination therapy also decreased IL-6 and IL-18 levels. While the level of IL-15 was positively correlated with skin re-epithelialization time in both groups, the level of IL-6 served as an additional marker for the course of the disease in the combination therapy group. LIMITATIONS: The cohort size is relatively small. CONCLUSION: Additional TNF-α inhibition to steroid treatment appeared to improve outcomes for SJS/TEN.


Asunto(s)
Síndrome de Stevens-Johnson , Humanos , Interleucina-15 , Interleucina-18 , Interleucina-6 , Proteínas Inflamatorias de Macrófagos , Metilprednisolona/uso terapéutico , Esteroides , Síndrome de Stevens-Johnson/etiología , Factor de Necrosis Tumoral alfa
6.
J Am Acad Dermatol ; 84(3): 644-653, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-32561372

RESUMEN

BACKGROUND: Complications involving internal organs are usually present in Stevens-Johnson syndrome (SJS) and toxic epidermal necrolysis (TEN). However, pancreatic complications are rarely reported and studied. OBJECTIVE: To summarize clinical characteristics of SJS/TEN-associated acute pancreatic injuries and to investigate underlying inflammatory mechanisms. METHODS: Clinical records of 124 inpatients with SJS/TEN were reviewed. Serum levels of tumor necrosis factor α, interleukin (IL) 6, IL-18, IL-15, IL-12p70, and soluble CD56 were determined in 18 healthy donors and 17 patients with SJS/TEN, including 3 with acute pancreatic injuries. RESULTS: Acute pancreatic injury was diagnosed in 7.3% of patients (9/124) in the SJS/TEN cohort. Elevation of serum transaminase level and hypoalbuminemia occurred more frequently in patients with acute pancreatic injuries compared with those without pancreatic symptoms (P = .004 and <.001, respectively). Although acute pancreatic injury did not alter mortality rate of SJS/TEN, it was associated with longer hospitalization stays (P = .008). Within the serum cytokines whose levels were elevated in SJS/TEN, only IL-18 was found to be selectively increased in patients with acute pancreatic injuries compared with those without them (P = .03). LIMITATIONS: Cohort was small. CONCLUSION: Acute pancreatic injury is a gastrointestinal complication of SJS/TEN in which hepatotoxicity is more likely to occur. Overexpression of IL-18 might be involved in this unique entity.


Asunto(s)
Interleucina-18/sangre , Pancreatitis/inmunología , Síndrome de Stevens-Johnson/complicaciones , Adolescente , Adulto , Anciano , Antígeno CD56/sangre , Antígeno CD56/inmunología , Niño , Femenino , Humanos , Interleucina-12/sangre , Interleucina-12/inmunología , Interleucina-15/sangre , Interleucina-15/inmunología , Interleucina-18/inmunología , Interleucina-6/sangre , Interleucina-6/inmunología , Masculino , Persona de Mediana Edad , Pancreatitis/sangre , Estudios Retrospectivos , Síndrome de Stevens-Johnson/sangre , Síndrome de Stevens-Johnson/inmunología , Síndrome de Stevens-Johnson/mortalidad , Factor de Necrosis Tumoral alfa/sangre , Factor de Necrosis Tumoral alfa/inmunología , Adulto Joven
7.
Proc Natl Acad Sci U S A ; 115(7): E1578-E1587, 2018 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-29382755

RESUMEN

The emergence and ongoing spread of multidrug-resistant bacteria puts humans and other species at risk for potentially lethal infections. Thus, novel antibiotics or alternative approaches are needed to target drug-resistant bacteria, and metabolic modulation has been documented to improve antibiotic efficacy, but the relevant metabolic mechanisms require more studies. Here, we show that glutamate potentiates aminoglycoside antibiotics, resulting in improved elimination of antibiotic-resistant pathogens. When exploring the metabolic flux of glutamate, it was found that the enzymes that link the phosphoenolpyruvate (PEP)-pyruvate-AcCoA pathway to the TCA cycle were key players in this increased efficacy. Together, the PEP-pyruvate-AcCoA pathway and TCA cycle can be considered the pyruvate cycle (P cycle). Our results show that inhibition or gene depletion of the enzymes in the P cycle shut down the TCA cycle even in the presence of excess carbon sources, and that the P cycle operates routinely as a general mechanism for energy production and regulation in Escherichia coli and Edwardsiella tarda These findings address metabolic mechanisms of metabolite-induced potentiation and fundamental questions about bacterial biochemistry and energy metabolism.


Asunto(s)
Aminoglicósidos/farmacología , Antibacterianos/farmacología , Edwardsiella tarda/efectos de los fármacos , Edwardsiella tarda/metabolismo , Escherichia coli/efectos de los fármacos , Escherichia coli/metabolismo , Ácido Pirúvico/metabolismo , Ciclo del Ácido Cítrico/efectos de los fármacos , Metabolismo Energético/efectos de los fármacos , Fosfoenolpiruvato/metabolismo
8.
Chem Biodivers ; 15(3): e1700563, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29377553

RESUMEN

Two new dolabrane diterpenes, tagalenes J and K (1 and 2), together with eleven known analogues (3 - 13), were isolated from the ethanolic extract of the Chinese mangrove Ceriops tagal. The structures of these compounds were determined by extensive spectroscopic analysis, including 1D-, 2D-NMR and HR-ESI-MS, as well as the comparison with data in the literatures. Cytotoxicities of isolated compounds against MCF-7, SW480, HepG2, HeLa, PANC-1, and A2058 cancer cell lines were also evaluated. Compound 4 exhibited weak cytotoxic activity against SW480, HeLa, and PANC-1 cell lines with IC50 values of 27.7, 22.2, and 17.6 µm, respectively.


Asunto(s)
Antineoplásicos Fitogénicos/farmacología , Diterpenos/farmacología , Rhizophoraceae/química , Antineoplásicos Fitogénicos/química , Antineoplásicos Fitogénicos/aislamiento & purificación , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , China , Diterpenos/química , Diterpenos/aislamiento & purificación , Relación Dosis-Respuesta a Droga , Ensayos de Selección de Medicamentos Antitumorales , Humanos , Espectroscopía de Resonancia Magnética , Conformación Molecular , Relación Estructura-Actividad
9.
J Proteome Res ; 16(5): 1880-1889, 2017 05 05.
Artículo en Inglés | MEDLINE | ID: mdl-28266220

RESUMEN

Crucial metabolites that modulate hosts' metabolome to eliminate bacterial pathogens have been documented, but the metabolic mechanisms are largely unknown. The present study explores the metabolic mechanism for l-leucine-induced metabolome to eliminate Streptococcus iniae in tilapia. GC-MS-based metabolomics was used to investigate the tilapia liver metabolic profile in the presence of exogenous l-leucine. Thirty-seven metabolites of differential abundance were determined, and 11 metabolic pathways were enriched. Pattern recognition analysis identified serine and proline as crucial metabolites, which are the two metabolites identified in survived tilapias during S. iniae infection, suggesting that the two metabolites play crucial roles in l-leucine-induced elimination of the pathogen by the host. Exogenous l-serine reduces the mortality of tilapias infected by S. iniae, providing a robust proof supporting the conclusion. Furthermore, exogenous l-serine elevates expression of genes IL-1ß and IL-8 in tilapia spleen, but not TNFα, CXCR4 and Mx, suggesting that the metabolite promotes a phagocytosis role of macrophages, which is consistent with the finding that l-leucine promotes macrophages to kill both Gram-positive and Gram-negative bacterial pathogens. Therefore, the ability of phagocytosis enhanced by exogenous l-leucine is partly attributed to elevation of l-serine. These results demonstrate a metabolic mechanism by which exogenous l-leucine modulates tilapias' metabolome to enhance innate immunity and eliminate pathogens.


Asunto(s)
Leucina/farmacología , Metaboloma/efectos de los fármacos , Fagocitosis , Streptococcus/inmunología , Tilapia/metabolismo , Animales , Enfermedades de los Peces/microbiología , Cromatografía de Gases y Espectrometría de Masas , Inmunidad Innata , Hígado/metabolismo , Macrófagos/inmunología , Metabolómica/métodos , Fagocitosis/efectos de los fármacos , Bazo/metabolismo , Infecciones Estreptocócicas , Tilapia/inmunología
10.
Cutan Ocul Toxicol ; 36(4): 370-376, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28423957

RESUMEN

PURPOSE: Morbidity due to cutaneous adverse drug reactions (CADRs) is quite common. The specific culprit drugs change over time and clinicians must be kept informed with updated knowledge, thus preventing potential CADRs. This retrospective study is a survey of CADRs encountered in a hospital-based population in Southern China during three time intervals, from 1984 to 2015. MATERIALS AND METHODS: The clinical records were review of 306 patients with CADRs who were admitted to our hospital from 2011 to 2015. These data were compared with patients visiting our hospital during 1984-1994 and 2003-2010. RESULTS: From 2011 to 2015, the most common CADRs were exanthematous reactions (40.8%) and Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN; 17.0%). There were eight cases (2.6%) of CADRs related to targeted therapy in oncology. In the 205 CADR cases that were due to single medications, the most common offending drugs were allopurinol (21.5%), cephalosporins (10.7%) and carbamazepine (10.2%). The percentages of CADR cases due to allopurinol, carbamazepine, or epidermal growth factor receptor inhibitors were significantly higher from 2011 to 2015 compared with 1984-1994 or 2003-2010. The rate of SJS/TEN occurrence was significantly higher in the two recent periods compared with 1984-1994. CONCLUSIONS: Changes in drug prescriptions are a major factor that affects the CADRs seen in clinical records. Newer drugs can be culpable for CADRs, and more CADRs are now documented with increased severity at clinical presentation. Reliable screening tests for specific drugs are urgently required to eliminate possible fatalities.


Asunto(s)
Erupciones por Medicamentos/epidemiología , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Alopurinol/efectos adversos , Antiinflamatorios no Esteroideos/efectos adversos , Carbamazepina/efectos adversos , Cefalosporinas/efectos adversos , Niño , Preescolar , China/epidemiología , Erupciones por Medicamentos/etiología , Femenino , Fluoroquinolonas/efectos adversos , Humanos , Lactante , Masculino , Medicina Tradicional China/efectos adversos , Persona de Mediana Edad , Penicilinas/efectos adversos , Adulto Joven
11.
J Proteome Res ; 15(7): 2246-53, 2016 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-27251450

RESUMEN

Streptococcus agalactiae causes severe systemic infections in human and fish. In the present study, we established a pathogen-plasma interaction model by which we explored how S. agalactiae evaded serum-mediated killing. We found that S. agalactiae grew faster in the presence of yellow grouper plasma than in the absence of the plasma, indicating S. agalactiae evolved a way of evading the fish immune system. To determine the events underlying this phenotype, we applied GC-MS-based metabolomics approaches to identify differential metabolomes between S. agalactiae cultured with and without yellow grouper plasma. Through bioinformatics analysis, decreased malic acid and increased adenosine were identified as the most crucial metabolites that distinguish the two groups. Meanwhile, they presented with decreased TCA cycle and elevated purine metabolism, respectively. Finally, exogenous malic acid and adenosine were used to reprogram the plasma-resistant metabolome, leading to elevated and decreased susceptibility to the plasma, respectively. Therefore, our findings reveal for the first time that S. agalactiae utilizes a metabolic trick to respond to plasma killing as a result of serum resistance, which may be reverted or enhanced by exogenous malic acid and adenosine, respectively, suggesting that the metabolic trick can be regulated by metabolites.


Asunto(s)
Peces/inmunología , Interacciones Huésped-Patógeno/inmunología , Metabolómica/métodos , Suero/inmunología , Streptococcus agalactiae/inmunología , Adenosina/metabolismo , Animales , Ciclo del Ácido Cítrico , Biología Computacional , Peces/microbiología , Cromatografía de Gases y Espectrometría de Masas , Humanos , Malatos/metabolismo , Metaboloma , Purinas/metabolismo
12.
Chem Biodivers ; 11(2): 262-75, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24591316

RESUMEN

Ten limonoids, named granatumins L-U (1-10, resp.), were isolated from the seeds of an Indian mangrove, Xylocarpus granatum, collected in the estuary of Krishna, Andhra Pradesh. The structures of these compounds were established on the basis of spectroscopic data. The relative configuration of granatumin L (1) was confirmed by a single-crystal X-ray diffraction analysis. Granatumins L-T (1-9, resp.) belong to the small group of limonoids with an oxygen bridge between C(1) and C(29), while granatumin U (10) is a 28-Me-oxidized mexicanolide. This is the first report of limonoids with an O-bridge between C(1) and C(29) from the Indian X. granatum. The pronounced structural diversity of limonoids from this mangrove might originate from environmental factors.


Asunto(s)
Limoninas/química , Meliaceae/química , Oxígeno/química , Semillas/química , Cristalografía por Rayos X , Limoninas/aislamiento & purificación , Modelos Moleculares , Conformación Molecular
13.
Beilstein J Org Chem ; 10: 276-81, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24605147

RESUMEN

Decandrinin (1), an unprecedented C9-spiro-fused 7,8-seco-ent-abietane, was obtained from the bark of an Indian mangrove, Ceriops decandra, collected in the estuary of Godavari, Andhra Pradesh. The constitution and the relative configuration of 1 were determined by HRMS (ESI) and extensive NMR investigations, and the absolute configuration by circular dichroism (CD) and optical-rotatory dispersion (ORD) spectroscopy in combination with quantum-chemical calculations. Decandrinin is the first 7,8-seco-ent-abietane.

14.
J Chromatogr A ; 1713: 464541, 2024 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-38041978

RESUMEN

To in-depth explore the action mechanism of C-reactive protein (CRP) and precisely study its signaling pathways, it is essential to acquire high-purity CRP while preserving its intact structure and functionality. In this study, we propose and fabricate a high-density 2-methacryloyloxyethyl phosphorylcholine (MPC)-modified membrane roll column (MPC-MRC) using a surface-initiated atom transfer radical polymerization (SI-ATRP) approach, which can overcome these limitations (long incubation time and low adsorption capacity) of conventional enrichment materials. The MPC-MRC incorporates a high-density 2-hydroxyethyl methacrylate polymer brush to prevent non-specific protein adsorption and multiple MPC polymer brush layers for high-performance enrichment of CRP in the company of calcium ions. Furthermore, the MPC-MRC exhibits high permeability, hydrophilicity, and mechanical strength. Compared to previous technologies, this novel material demonstrates significantly higher CRP binding capacity (310.3 mg/g), shorter processing time (only 15 min), and lower cost (only 12 USD/column). Notably, the MPC-MRC enables fast and effective purification of CRP from both human and rat serum, exhibiting good selectivity, recovery (> 91.3 %), and purity (> 95.2 %). Thus, this proposed purification approach based on MPC-MRC holds great potential for target protein enrichment from complex samples, as well as facilitating in-depth studies of its biological functions.


Asunto(s)
Biomimética , Proteína C-Reactiva , Animales , Humanos , Ratas , Proteína C-Reactiva/química , Metacrilatos/química , Polímeros/química , Fosforilcolina/química , Propiedades de Superficie , Adsorción
15.
JMIR Form Res ; 8: e52482, 2024 Mar 25.
Artículo en Inglés | MEDLINE | ID: mdl-38526545

RESUMEN

BACKGROUND: Extractive methods for machine reading comprehension (MRC) tasks have achieved comparable or better accuracy than human performance on benchmark data sets. However, such models are not as successful when adapted to complex domains such as health care. One of the main reasons is that the context that the MRC model needs to process when operating in a complex domain can be much larger compared with an average open-domain context. This causes the MRC model to make less accurate and slower predictions. A potential solution to this problem is to reduce the input context of the MRC model by extracting only the necessary parts from the original context. OBJECTIVE: This study aims to develop a method for extracting useful contexts from long articles as an additional component to the question answering task, enabling the MRC model to work more efficiently and accurately. METHODS: Existing approaches to context extraction in MRC are based on sentence selection strategies, in which the models are trained to find the sentences containing the answer. We found that using only the sentences containing the answer was insufficient for the MRC model to predict correctly. We conducted a series of empirical studies and observed a strong relationship between the usefulness of the context and the confidence score output of the MRC model. Our investigation showed that a precise input context can boost the prediction correctness of the MRC and greatly reduce inference time. We proposed a method to estimate the utility of each sentence in a context in answering the question and then extract a new, shorter context according to these estimations. We generated a data set to train 2 models for estimating sentence utility, based on which we selected more precise contexts that improved the MRC model's performance. RESULTS: We demonstrated our approach on the Question Answering Data Set for COVID-19 and Biomedical Semantic Indexing and Question Answering data sets and showed that the approach benefits the downstream MRC model. First, the method substantially reduced the inference time of the entire question answering system by 6 to 7 times. Second, our approach helped the MRC model predict the answer more correctly compared with using the original context (F1-score increased from 0.724 to 0.744 for the Question Answering Data Set for COVID-19 and from 0.651 to 0.704 for the Biomedical Semantic Indexing and Question Answering). We also found a potential problem where extractive transformer MRC models predict poorly despite being given a more precise context in some cases. CONCLUSIONS: The proposed context extraction method allows the MRC model to achieve improved prediction correctness and a significantly reduced MRC inference time. This approach works technically with any MRC model and has potential in tasks involving processing long texts.

16.
Acta Pharm Sin B ; 14(3): 1317-1328, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38487009

RESUMEN

Due to low immobilized ligand density, limited binding capacity, and severe interference from serum proteins, developing ideal peptide-based biomaterials for precise recognition and in vivo analysis of biopharmaceuticals remains a huge challenge. In this study, mimotope peptide modified pompon mum-like biomimetic magnetic microparticles (MMPs, 3.8 µm) that mimic the specific functionalities of CD20 on malignant B cells were developed for the first time. Benefit from the numerous ligand binding sites (Ni2+) on the pompon mum-like MMPs, these novel materials achieved ≥10 times higher peptide ligand densities (>2300 mg/g) and antibody binding capacities (1380 mg/g) compared to previous reported biomaterials. Leveraging the high specificity of the mimotope peptide, rituximab can be precisely recognized and enriched from cell culture media or serum samples. We also established an LC‒MS/MS method using the MMPs for tracking rituximab biotransformation in patient serum. Intriguingly, deamidation of Asn55 and Asn33, as well as oxidation of Met81 and Met34 were observed at the key complementarity determining regions of rituximab, which could potentially influence antibody function and require careful monitoring. Overall, these versatile biomimetic MMPs demonstrate superior recognition and enrichment capabilities for target antibodies, offering interesting possibilities for biotransformation analysis of biopharmaceuticals in patient serum.

17.
Phytomedicine ; 128: 155501, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38471318

RESUMEN

BACKGROUND: The discovering of an osteoclast (OC) coupling active agent, capable of suppressing OC-mediated bone resorption while concurrently stimulating osteoblast (OB)-mediated bone formation, presents a promising strategy to overcome limitations associated with existing antiresorptive agents. However, there is a lack of research on active OC coupling agents. PURPOSE: This study aims to investigate the potential of Jiangu Formula (JGF) in inhibiting OCs while maintaining the OCOB coupling function. METHODS: The anti-osteoporosis efficacy of JGF was evaluated in osteoporosis models induced by ovariectomy in C57BL/6 mouse and SD rats. The effect of JGF on OCs was evaluated by detecting its capacity to inhibit OC differentiation and bone resorption in an in vitro osteoclastogenesis model induced by RANKL. The OCOB coupling activity of JGF was evaluated by measuring the secretion levels of OC-derived coupling factors, OB differentiation activity of MC3T3-E1 interfered with conditioned medium, and the effect of JGF on OC inhibition and OB differentiation in a C3H10T1/2-RAW264.7 co-culture system. The mechanism of JGF was studied by network pharmacology and validated using western blot, immunofluorescence (IF), and ELISA. Following that, the active ingredients of JGF were explored through a chemotype-assembly approach, activity evaluation, and LC-MS/MS analysis. RESULTS: JGF inhibited bone resorption in murine osteoporosis without compromising the OCOB coupling effect on bone formation. In vitro assays showed that JGF preserved the coupling effect of OC on OB differentiation by maintaining the secretion of OC-derived coupling factors. Network analysis predicted STAT3 as a key regulation point for JGF to exert anti-osteoporosis effect. Further validation assays confirmed that JGF upregulated p-STAT3(Ser727) and its regulatory factors IL-2 in RANKL-induced RAW264.7 cells. Moreover, 23 components in JGF with anti-OC activity identified by chemotype-assembly approach and verification experiments. Notably, six compounds, including ophiopogonin D, ginsenoside Re, ginsenoside Rf, ginsenoside Rg3, ginsenoside Ro, and ononin were identified as OC-coupling compounds. CONCLUSION: This study first reported JGF as an agent that suppresses bone loss without affecting bone formation. The potential coupling mechanism of JGF involves the upregulation of STAT3 by its regulators IL-2. Additionally, the chemotype-assembly approach elucidated the activity compounds present in JGF, offering a novel strategy for developing an anti-resorption agent that preserves bone formation.


Asunto(s)
Resorción Ósea , Diferenciación Celular , Medicamentos Herbarios Chinos , Ratones Endogámicos C57BL , Osteoblastos , Osteoclastos , Osteoporosis , Ratas Sprague-Dawley , Animales , Osteoclastos/efectos de los fármacos , Medicamentos Herbarios Chinos/farmacología , Medicamentos Herbarios Chinos/química , Ratones , Osteoporosis/tratamiento farmacológico , Osteoblastos/efectos de los fármacos , Femenino , Células RAW 264.7 , Diferenciación Celular/efectos de los fármacos , Resorción Ósea/tratamiento farmacológico , Ovariectomía , Ligando RANK , Ratas , Osteogénesis/efectos de los fármacos , Modelos Animales de Enfermedad , Factor de Transcripción STAT3/metabolismo
18.
Planta Med ; 79(8): 666-72, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23599007

RESUMEN

Eleven new diterpenes, named decandrins A-K (1-11), including nine abietanes (1-9) and two podocarpanes (10-11), were isolated from the barks of an Indian mangrove, Ceriops decandra, collected in the mangrove swamp of Godavari estuary, Andhra Pradesh, together with four known abietanes. The structures of these compounds were established on the basis of spectroscopic data (new compounds) or comparison with data in the literature (known compounds). This is the first report of abietane and podocarpane diterpenoids from C. decandra.


Asunto(s)
Diterpenos/aislamiento & purificación , Rhizophoraceae/química , Cromatografía Líquida de Alta Presión , Diterpenos/química , Espectroscopía de Resonancia Magnética , Estructura Molecular , Espectrometría de Masa por Ionización de Electrospray , Espectrofotometría Ultravioleta
19.
Chem Biodivers ; 10(4): 612-20, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23576347

RESUMEN

Two new mexicanolides, named granatumins H and I (1 and 2, resp.), and two phragmalins, named granatumins J and K (3 and 4, resp.), were isolated from the seeds of an Indian mangrove, Xylocarpus moluccensis, collected from the swamps of Krishna estuary, Andhra Pradesh. The structures of these limonoids were established on the basis of spectroscopic data. Granatumin J (3) is a highly oxidized phragmalin with five AcO groups, whereas granatumin K (4) is the first phragmalin found in nature with conjugated C(8)C(30) and C(14)C(15) bonds.


Asunto(s)
Limoninas/química , Meliaceae/química , Limoninas/aislamiento & purificación , Espectroscopía de Resonancia Magnética , Conformación Molecular , Semillas/química
20.
Zhongguo Zhong Yao Za Zhi ; 38(14): 2282-6, 2013 Jul.
Artículo en Zh | MEDLINE | ID: mdl-24199555

RESUMEN

A total of 24 biologically pure entophytic fungal strains were isolated from stems, leaves, and seed coats of Xylocarpus plants by repeated purification, and identified with Internal Transcribed Spacer (ITS) rDNA molecular method, which belonging to 14 genera, 11 families, 9 orders and 3 classes. There were differences in genus and species levels among three plant materials from different habitats and species, and it was found that the strains of Phomopsis and Colletotrichum existed in all three plant materials. In vitro assay of antitumor activity by MTT method revealed that the EtOAc extracts of 15 strains exhibited potent antitumor activity. These results suggest that it is of value for further investigation on the above fungal strains.


Asunto(s)
Antineoplásicos/aislamiento & purificación , Hongos/química , Hongos/aislamiento & purificación , Meliaceae/microbiología , Antineoplásicos/farmacología , Biodiversidad , Línea Celular Tumoral , Endófitos/química , Endófitos/clasificación , Endófitos/genética , Endófitos/aislamiento & purificación , Hongos/clasificación , Hongos/genética , Células HCT116 , Humanos , Filogenia
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