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1.
J Cell Sci ; 135(2)2022 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-34888671

RESUMEN

Catecholaminergic polymorphic ventricular tachycardia (CPVT) is an inherited condition that can cause fatal cardiac arrhythmia. Human mutations in the Ca2+ sensor calmodulin (CaM) have been associated with CPVT susceptibility, suggesting that CaM dysfunction is a key driver of the disease. However, the detailed molecular mechanism remains unclear. Focusing on the interaction with the cardiac ryanodine receptor (RyR2), we determined the effect of CPVT-associated variants N53I and A102V on the structural characteristics of CaM and on Ca2+ fluxes in live cells. We provide novel data showing that interaction of both Ca2+/CaM-N53I and Ca2+/CaM-A102V with the RyR2 binding domain is decreased. Ca2+/CaM-RyR23583-3603 high-resolution crystal structures highlight subtle conformational changes for the N53I variant, with A102V being similar to wild type (WT). We show that co-expression of CaM-N53I or CaM-A102V with RyR2 in HEK293 cells significantly increased the duration of Ca2+ events; CaM-A102V exhibited a lower frequency of Ca2+ oscillations. In addition, we show that CaMKIIδ (also known as CAMK2D) phosphorylation activity is increased for A102V, compared to CaM-WT. This paper provides novel insight into the molecular mechanisms of CPVT-associated CaM variants and will facilitate the development of strategies for future therapies.


Asunto(s)
Calmodulina , Taquicardia Ventricular , Calcio/metabolismo , Calmodulina/genética , Calmodulina/metabolismo , Células HEK293 , Humanos
2.
J Cardiovasc Pharmacol ; 83(1): 33-42, 2024 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-37890084

RESUMEN

ABSTRACT: Regulated cell death is a controlled form of cell death that protects cells by adaptive responses in pathophysiological states. Ferroptosis has been identified as a novel method of controlling cell death in recent years. Several cardiovascular diseases (CVDs) are shown to be profoundly influenced by ferroptosis, and ferroptosis is directly linked to the majority of cardiovascular pathological alterations. Despite this, it is still unclear how ferroptosis affects the pathogenic alterations that take place in CVDs. Based on a review of the mechanisms that regulate ferroptosis, this review explores the most recent research on the role of ferroptosis in the major pathological changes associated with CVDs, to provide new perspectives and strategies for cardiovascular research and clinical treatment.


Asunto(s)
Enfermedades Cardiovasculares , Ferroptosis , Humanos , Muerte Celular
3.
Chemistry ; 29(16): e202203017, 2023 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-36550088

RESUMEN

A method for measuring peptidylprolyl bond cis-trans conformational status in peptide models is described, using 4-fluorophenylalanine (4FPhe) as a distal reporter for 19 F NMR. The %cis-Pro population was measured for peptides of the general structure Ac-X-Pro-Z-Ala-Ala-4FPhe (X and Z are proteinogenic amino acids) at pH 7.4, and provided conformational populations consistent with literature values obtained by more complex methods. This approach was applied to probe the prolyl bond status in pentapeptide models of the intrinsically disordered C-terminal region of α-synuclein, which mirrored the preferences in the Ac-X-Pro-Z-Ala-4FPhe models. Advantageously, the 19 F reporter group does not need to be adjacent to or attached to proline to provide quantifiable signals and distal 4-fluorophenylalanines can be placed so as not to influence prolyl bond conformation. Finally, we demonstrated that the prolyl bond status is not significantly affected by pH when there are ionisable amino acid residues at the carboxyl side of proline, which makes 19 F NMR an invaluable tool with which to study proline isomerism at a range of pHs and in different solvents and buffers.


Asunto(s)
Péptidos , Prolina , Conformación Proteica , Péptidos/química , Espectroscopía de Resonancia Magnética , Isomerismo , Prolina/química
4.
Platelets ; 33(6): 911-917, 2022 Aug 18.
Artículo en Inglés | MEDLINE | ID: mdl-34904537

RESUMEN

A multi-center prospective cross-sectional and genome-wide association study (GWAS) recruited pregnant women taking low dose aspirin. Objectives were to (i) develop pregnancy-specific 95% reference intervals for a range of laboratory based platelet function tests (PFTs); (ii) select an optimal and acceptable PFT that reflected aspirin's COX-1 inhibition in women with confirmed aspirin adherence in pregnancy; and (iii) identify genomic variants that may influence pregnant women's platelet response to aspirin.The study included two independent cohorts of pregnant women. A range of PFTs and matched phenotyping with urinary 11-dehydrothromboxane B2 (11DTXB2) and nuclear magnetic resonance (NMR) spectroscopy detection of urinary salicyluric acid as a measure of aspirin adherence were performed. Genome-wide data was acquired from the UK Biobank Axiom® (Thermo Fisher Scientific). 11DTXB2 in combination with adherence testing with NMR salicyluric acid was an accurate and acceptable testing strategy for detecting biochemical aspirin responsiveness in pregnant women, with the provision of relevant reference ranges. GWAS meta-analysis found no significant single nucleotide polymorphisms in association with response to aspirin in pregnancy. Further evaluation in relation to effective dosing of aspirin in pregnancy and optimizing the benefits to specific subgroups should now be a priority for future research.


Asunto(s)
Aspirina , Inhibidores de Agregación Plaquetaria , Aspirina/farmacología , Aspirina/uso terapéutico , Estudios Transversales , Femenino , Estudio de Asociación del Genoma Completo , Humanos , Inhibidores de Agregación Plaquetaria/farmacología , Inhibidores de Agregación Plaquetaria/uso terapéutico , Embarazo , Estudios Prospectivos , Tromboxano B2 , Reino Unido
5.
Biochem Biophys Res Commun ; 523(2): 336-341, 2020 03 05.
Artículo en Inglés | MEDLINE | ID: mdl-31866013

RESUMEN

The ß-galactoside-binding protein, galectin-3, is extensively involved in cancer development, progression and metastasis through multiple mechanisms. Inhibition of the galectin-3-mediated actions is increasingly considered as a promising therapeutic approach for cancer treatment. Our early studies have identified several novel galectin-3 binding inhibitors from chemical modification of the anticoagulant drug heparin. These heparin-derived galectin-3 binding inhibitors, which show no anticoagulant activity and bind to the galectin-3 canonical carbohydrate-binding site, induce galectin-3 conformational changes and inhibit galectin-3-mediated cancer cell adhesion, invasion and angiogenesis in vitro and reduce metastasis in mice. In this study, we determined the binding affinities of these heparin-derived ligands to galectin-3 using an isothermal titration calorimetry (ITC) ligand displacement approach. Such ITC experiments showed that the 2-de-O-sulphated, N-acetylated (compound E) and 6-de-O-sulphated, N-acetylated (F) heparin-derived ligands and their ultra-low molecular weight sub-fractions (E3 and F3) bind to galectin-3 with KD ranging from 0.96 to 1.32 mM.Differential scanning fluorimetry analysis revealed that, in contrast to the disaccharide ligand, N-acetyl-lactosamine, which binds to the fully folded form of galectin-3 and promotes galectin-3 thermal stability, the heparin-derived ligands preferentially bind to the unfolded state of galectin-3 and cause destabilization of the galectin-3 protein structure. These results provide molecular insights into the interaction of galectin-3 with the heparin-derived ligands and explain the previously demonstrated in vitro and in vivo effects of these binding inhibitors on galectin-3-mediated cancer cell behaviours.


Asunto(s)
Galectina 3/antagonistas & inhibidores , Heparina/análogos & derivados , Animales , Antineoplásicos/metabolismo , Antineoplásicos/farmacología , Sitios de Unión , Proteínas Sanguíneas , Calorimetría , Fluorometría , Galectina 3/química , Galectina 3/metabolismo , Galectinas , Heparina/metabolismo , Heparina/farmacología , Humanos , Ligandos , Ratones , Neoplasias/tratamiento farmacológico , Neoplasias/metabolismo , Unión Proteica , Estabilidad Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/efectos de los fármacos , Proteínas Recombinantes/metabolismo
6.
Hum Mol Genet ; 26(13): 2426-2435, 2017 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-28398555

RESUMEN

Dystonia is a neurological movement disorder that forces the body into twisting, repetitive movements or sometimes painful abnormal postures. With the advent of next-generation sequencing technologies, the homozygous mutations T71N and A190T in the neuronal calcium sensor (NCS) hippocalcin were identified as the genetic cause of primary isolated dystonia (DYT2 dystonia). However, the effect of these mutations on the physiological role of hippocalcin has not yet been elucidated. Using a multidisciplinary approach, we demonstrated that hippocalcin oligomerises in a calcium-dependent manner and binds to voltage-gated calcium channels. Mutations T71N and A190T in hippocalcin did not affect stability, calcium-binding affinity or translocation to cellular membranes (Ca2+/myristoyl switch). We obtained the first crystal structure of hippocalcin and alignment with other NCS proteins showed significant variability in the orientation of the C-terminal part of the molecule, the region expected to be important for target binding. We demonstrated that the disease-causing mutations did not affect the structure of the protein, however both mutants showed a defect in oligomerisation. In addition, we observed an increased calcium influx in KCl-depolarised cells expressing mutated hippocalcin, mostly driven by N-type voltage-gated calcium channels. Our data demonstrate that the dystonia-causing mutations strongly affect hippocalcin cellular functions which suggest a central role for perturbed calcium signalling in DYT2 dystonia.


Asunto(s)
Distonía/genética , Hipocalcina/genética , Hipocalcina/metabolismo , Calcio/metabolismo , Canales de Calcio/metabolismo , Señalización del Calcio , Proteínas de Unión al Calcio/genética , Técnicas de Cultivo de Célula , Membrana Celular/metabolismo , Trastornos Distónicos , Hipocalcina/fisiología , Humanos , Mutación , Ácido Mirístico/metabolismo , Proteínas del Tejido Nervioso/genética , Neuronas/metabolismo
7.
PLoS Pathog ; 13(6): e1006448, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28662181

RESUMEN

Pathogenic and commensal Neisseria species produce an Adhesin Complex Protein, which was first characterised in Neisseria meningitidis (Nm) as a novel surface-exposed adhesin with vaccine potential. In the current study, the crystal structure of a recombinant (r)Nm-ACP Type I protein was determined to 1.4 Å resolution: the fold resembles an eight-stranded ß-barrel, stabilized by a disulphide bond between the first (Cys38) and last (Cys121) ß-strands. There are few main-chain hydrogen bonds linking ß4-ß5 and ß8-ß1, so the structure divides into two four-stranded anti-parallel ß-sheets (ß1-ß4 and ß5-ß8). The computed surface electrostatic charge distribution showed that the ß1-ß4 sheet face is predominantly basic, whereas the ß5-ß8 sheet is apolar, apart from the loop between ß4 and ß5. Concentrations of rNm-ACP and rNeisseria gonorrhoeae-ACP proteins ≥0.25 µg/ml significantly inhibited by ~80-100% (P<0.05) the in vitro activity of human lysozyme (HL) over 24 h. Specificity was demonstrated by the ability of murine anti-Neisseria ACP sera to block ACP inhibition and restore HL activity. ACP expression conferred tolerance to HL activity, as demonstrated by significant 3-9 fold reductions (P<0.05) in the growth of meningococcal and gonococcal acp gene knock-out mutants in the presence of lysozyme. In addition, wild-type Neisseria lactamica treated with purified ACP-specific rabbit IgG antibodies showed similar fold reductions in bacterial growth, compared with untreated bacteria (P<0.05). Nm-ACPI is structurally similar to the MliC/PliC protein family of lysozyme inhibitors. However, Neisseria ACP proteins show <20% primary sequence similarity with these inhibitors and do not share any conserved MliC/PliC sequence motifs associated with lysozyme recognition. These observations suggest that Neisseria ACP adopts a different mode of lysozyme inhibition and that the ability of ACP to inhibit lysozyme activity could be important for host colonization by both pathogenic and commensal Neisseria organisms. Thus, ACP represents a dual target for developing Neisseria vaccines and drugs to inhibit host-pathogen interactions.


Asunto(s)
Adhesinas Bacterianas/química , Proteínas Bacterianas/química , Interacciones Huésped-Patógeno/inmunología , Vacunas Meningococicas/metabolismo , Neisseria meningitidis/metabolismo , Neisseria/química , Adhesinas Bacterianas/metabolismo , Animales , Proteínas Bacterianas/metabolismo , Humanos , Muramidasa/antagonistas & inhibidores , Neisseria/metabolismo , Conejos
8.
J Proteome Res ; 17(11): 3780-3790, 2018 11 02.
Artículo en Inglés | MEDLINE | ID: mdl-30229649

RESUMEN

Despite osteoarthritis (OA) and rheumatoid arthritis (RA) being typically age-related, their underlying etiologies are markedly different. We used 1H nuclear magnetic resonance (NMR) spectroscopy to identify differences in metabolite profiles in low volumes of OA and RA synovial fluid (SF). SF was aspirated from knee joints of 10 OA and 14 RA patients. 100 µL SF was analyzed using a 700 MHz Avance IIIHD Bruker NMR spectrometer with a TCI cryoprobe. Spectra were analyzed by Chenomx, Bruker TopSpin and AMIX software. Statistical analysis was undertaken using Metaboanalyst. 50 metabolites were annotated, including amino acids, saccharides, nucleotides and soluble lipids. Discriminant analysis identified group separation between OA and RA cohorts, with 32 metabolites significantly different between OA and RA SF (false discovery rate (FDR) < 0.05). Metabolites of glycolysis and the tricarboxylic acid cycle were lower in RA compared to OA; these results concur with higher levels of inflammation, synovial proliferation and hypoxia found in RA compared to OA. Elevated taurine in OA may indicate increased subchondral bone sclerosis. We demonstrate that quantifiable differences in metabolite abundance can be measured in low volumes of SF by 1H NMR spectroscopy, which may be clinically useful to aid diagnosis and improve understanding of disease pathogenesis.


Asunto(s)
Artritis Reumatoide/metabolismo , Espectroscopía de Resonancia Magnética/métodos , Metaboloma , Metabolómica/métodos , Osteoartritis/metabolismo , Líquido Sinovial/química , Anciano , Aminoácidos/química , Aminoácidos/clasificación , Aminoácidos/aislamiento & purificación , Artritis Reumatoide/inmunología , Artritis Reumatoide/patología , Ciclo del Ácido Cítrico/inmunología , Estudios de Cohortes , Femenino , Glucólisis/inmunología , Humanos , Articulación de la Rodilla/inmunología , Articulación de la Rodilla/metabolismo , Articulación de la Rodilla/patología , Lípidos/química , Lípidos/clasificación , Lípidos/aislamiento & purificación , Masculino , Metabolómica/instrumentación , Persona de Mediana Edad , Nucleótidos/química , Nucleótidos/clasificación , Nucleótidos/aislamiento & purificación , Oligosacáridos/química , Oligosacáridos/clasificación , Oligosacáridos/aislamiento & purificación , Osteoartritis/inmunología , Osteoartritis/patología , Líquido Sinovial/metabolismo
9.
J Biol Chem ; 290(30): 18744-56, 2015 Jul 24.
Artículo en Inglés | MEDLINE | ID: mdl-25979333

RESUMEN

Neuronal calcium sensor-1 (NCS-1) is the primordial member of the neuronal calcium sensor family of EF-hand Ca(2+)-binding proteins. It interacts with both the G-protein-coupled receptor (GPCR) dopamine D2 receptor (D2R), regulating its internalization and surface expression, and the cognate kinases GRK1 and GRK2. Determination of the crystal structures of Ca(2+)/NCS-1 alone and in complex with peptides derived from D2R and GRK1 reveals that the differential recognition is facilitated by the conformational flexibility of the C-lobe-binding site. We find that two copies of the D2R peptide bind within the hydrophobic crevice on Ca(2+)/NCS-1, but only one copy of the GRK1 peptide binds. The different binding modes are made possible by the C-lobe-binding site of NCS-1, which adopts alternative conformations in each complex. C-terminal residues Ser-178-Val-190 act in concert with the flexible EF3/EF4 loop region to effectively form different peptide-binding sites. In the Ca(2+)/NCS-1·D2R peptide complex, the C-terminal region adopts a 310 helix-turn-310 helix, whereas in the GRK1 peptide complex it forms an α-helix. Removal of Ser-178-Val-190 generated a C-terminal truncation mutant that formed a dimer, indicating that the NCS-1 C-terminal region prevents NCS-1 oligomerization. We propose that the flexible nature of the C-terminal region is essential to allow it to modulate its protein-binding sites and adapt its conformation to accommodate both ligands. This appears to be driven by the variability of the conformation of the C-lobe-binding site, which has ramifications for the target specificity and diversity of NCS-1.


Asunto(s)
Proteínas de Unión al Calcio/metabolismo , Calcio/metabolismo , Quinasa 1 del Receptor Acoplado a Proteína-G/química , Proteínas Sensoras del Calcio Neuronal/metabolismo , Neuropéptidos/metabolismo , Receptores de Dopamina D2/química , Secuencia de Aminoácidos/genética , Sitios de Unión , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/genética , Cristalografía por Rayos X , Dopamina/genética , Dopamina/metabolismo , Quinasa 1 del Receptor Acoplado a Proteína-G/genética , Quinasa 1 del Receptor Acoplado a Proteína-G/metabolismo , Humanos , Proteínas Sensoras del Calcio Neuronal/química , Proteínas Sensoras del Calcio Neuronal/genética , Neuropéptidos/química , Neuropéptidos/genética , Péptidos/química , Péptidos/genética , Péptidos/metabolismo , Unión Proteica , Estructura Secundaria de Proteína/genética , Receptores de Dopamina D2/genética , Receptores de Dopamina D2/metabolismo , Transducción de Señal/genética
10.
Biomed Environ Sci ; 28(3): 222-6, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25800448

RESUMEN

70 clinical Mycobacterium tuberculosis strains isolated from AIDS patients in two HIV/AIDS referral hospitals in Beijing were used in this study. M. tuberculosis and non-tuberculosis mycobacterium (NTM) were identified by using multi-locus PCR. M. tuberculosis was genotyped by using 15-locus MIRU-VNTR technique and spoligotyping afterwards. Meanwhile, the drug susceptibilities of the strains to the four first-line anti TB drugs (rifampin, isoniazid, streptomycin, and ethambutol) and the four second-line anti-TB drugs (capreomycin, kanamycin, ofloxacin, and ethionanide) were tested with proportional method. In this study, M. tuberculosis and NTM strains isolated from AIDS patients with TB-like symptoms were identified and genotyping analysis indicated that Beijing genotype was the predominant genotype. In addition, the prevalence of drug-resistant TB, especially the prevalence of XDR-TB, was higher than that in TB patients without HIV infection.


Asunto(s)
Infecciones Oportunistas Relacionadas con el SIDA/microbiología , Antituberculosos/farmacología , Mycobacterium tuberculosis/efectos de los fármacos , Tuberculosis/complicaciones , China , Humanos , Pruebas de Sensibilidad Microbiana , Mycobacterium tuberculosis/clasificación , Mycobacterium tuberculosis/aislamiento & purificación , Filogenia , Tuberculosis/microbiología
11.
Biochemistry ; 53(38): 6052-62, 2014 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-25188201

RESUMEN

In neurons, entry of extracellular calcium (Ca(2+)) into synaptic terminals through Cav2.1 (P/Q-type) Ca(2+) channels is the driving force for exocytosis of neurotransmitter-containing synaptic vesicles. This class of Ca(2+) channel is, therefore, pivotal during normal neurotransmission in higher organisms. In response to channel opening and Ca(2+) influx, specific Ca(2+)-binding proteins associate with cytoplasmic regulatory domains of the P/Q channel to modulate subsequent channel opening. Channel modulation in this way influences synaptic plasticity with consequences for higher-level processes such as learning and memory acquisition. The ubiquitous Ca(2+)-sensing protein calmodulin (CaM) regulates the activity of all types of mammalian voltage-gated Ca(2+) channels, including the P/Q class, by direct binding to specific regulatory motifs. More recently, experimental evidence has highlighted a role for additional Ca(2+)-binding proteins, particularly of the CaBP and NCS families in the regulation of P/Q channels. NCS-1 is a protein found from yeast to humans and that regulates a diverse number of cellular functions. Physiological and genetic evidence indicates that NCS-1 regulates P/Q channel activity, including calcium-dependent facilitation, although a direct physical association between the proteins has yet to be demonstrated. In this study, we aimed to determine if there is a direct interaction between NCS-1 and the C-terminal cytoplasmic tail of the Cav2.1 α-subunit. Using distinct but complementary approaches, including in vitro binding of bacterially expressed recombinant proteins, fluorescence spectrophotometry, isothermal titration calorimetry, nuclear magnetic resonance, and expression of fluorescently tagged proteins in mammalian cells, we show direct binding and demonstrate that CaM can compete for it. We speculate about how NCS-1/Cav2.1 association might add to the complexity of calcium channel regulation mediated by other known calcium-sensing proteins and how this might help to fine-tune neurotransmission in the mammalian central nervous system.


Asunto(s)
Canales de Calcio Tipo N/metabolismo , Proteínas Sensoras del Calcio Neuronal/metabolismo , Neuropéptidos/metabolismo , Calcio/metabolismo , Canales de Calcio Tipo N/química , Clonación Molecular , Humanos , Proteínas Sensoras del Calcio Neuronal/química , Neuropéptidos/química , Unión Proteica
12.
PLoS Pathog ; 8(9): e1002923, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23028322

RESUMEN

Type IV pili are polymeric fibers which protrude from the cell surface and play a critical role in adhesion and invasion by pathogenic bacteria. The secretion of pili across the periplasm and outer membrane is mediated by a specialized secretin protein, PilQ, but the way in which this large channel is formed is unknown. Using NMR, we derived the structures of the periplasmic domains from N. meningitidis PilQ: the N-terminus is shown to consist of two ß-domains, which are unique to the type IV pilus-dependent secretins. The structure of the second ß-domain revealed an eight-stranded ß-sandwich structure which is a novel variant of the HSP20-like fold. The central part of PilQ consists of two α/ß fold domains: the structure of the first of these is similar to domains from other secretins, but with an additional α-helix which links it to the second α/ß domain. We also determined the structure of the entire PilQ dodecamer by cryoelectron microscopy: it forms a cage-like structure, enclosing a cavity which is approximately 55 Å in internal diameter at its largest extent. Specific regions were identified in the density map which corresponded to the individual PilQ domains: this allowed us to dock them into the cryoelectron microscopy density map, and hence reconstruct the entire PilQ assembly which spans the periplasm. We also show that the C-terminal domain from the lipoprotein PilP, which is essential for pilus assembly, binds specifically to the first α/ß domain in PilQ and use NMR chemical shift mapping to generate a model for the PilP:PilQ complex. We conclude that passage of the pilus fiber requires disassembly of both the membrane-spanning and the ß-domain regions in PilQ, and that PilP plays an important role in stabilising the PilQ assembly during secretion, through its anchorage in the inner membrane.


Asunto(s)
Proteínas Fimbrias/metabolismo , Fimbrias Bacterianas/metabolismo , Neisseria meningitidis/metabolismo , Neisseria meningitidis/ultraestructura , Adhesión Bacteriana , Proteínas de la Membrana Bacteriana Externa/química , Proteínas de la Membrana Bacteriana Externa/metabolismo , Membrana Celular/metabolismo , Proteínas Fimbrias/química , Fimbrias Bacterianas/ultraestructura , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Periplasma/metabolismo , Unión Proteica , Pliegue de Proteína , Estructura Terciaria de Proteína
13.
Biochem Soc Trans ; 42(4): 866-72, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-25109970

RESUMEN

MUPs (major urinary proteins) play an important role in chemical signalling in rodents and possibly other animals. In the house mouse (Mus musculus domesticus) MUPs in urine and other bodily fluids trigger a range of behavioural responses that are only partially understood. There are at least 21 Mup genes in the C57BL/6 mouse genome, all located on chromosome 4, encoding sequences of high similarity. Further analysis separates the MUPs into two groups, the 'central' near-identical MUPs with over 97% sequence identity and the 'peripheral' MUPs with a greater degree of heterogeneity and approximately 20-30% non-conserved amino acids. This review focuses on differences between the two MUP sub-groups and categorizes these changes in terms of molecular structure and pheromone binding. As small differences in amino acid sequence can result in marked changes in behavioural response to the signal, we explore the potential of single amino acid changes to affect chemical signalling and protein stabilization. Using analysis of existing molecular structures available in the PDB we compare the chemical and physical properties of the ligand cavities between the MUPs. Furthermore, we identify differences on the solvent exposed surfaces of the proteins, which are characteristic of protein-protein interaction sites. Correlations can be seen between molecular heterogeneity and the specialized roles attributed to some MUPs.


Asunto(s)
Proteínas/química , Proteínas/metabolismo , Secuencia de Aminoácidos , Animales , Péptidos y Proteínas de Señalización Intercelular , Ratones , Ratones Endogámicos C57BL , Datos de Secuencia Molecular , Feromonas/química , Feromonas/metabolismo , Estructura Secundaria de Proteína , Homología de Secuencia de Aminoácido , Transducción de Señal/genética , Transducción de Señal/fisiología
14.
Nucleic Acids Res ; 40(7): 3232-44, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22140111

RESUMEN

SRSF2 is a prototypical SR protein which plays important roles in the alternative splicing of pre-mRNA. It has been shown to be involved in regulatory pathways for maintaining genomic stability and play important roles in regulating key receptors in the heart. We report here the solution structure of the RNA recognition motifs (RRM) domain of free human SRSF2 (residues 9-101). Compared with other members of the SR protein family, SRSF2 structure has a longer L3 loop region. The conserved aromatic residue in the RNP2 motif is absent in SRSF2. Calorimetric titration shows that the RNA sequence 5'AGCAGAGUA3' binds SRSF2 with a K(d) of 61 ± 1 nM and a 1:1 stoichiometry. NMR and mutagenesis experiments reveal that for SFSF2, the canonical ß1 and ß3 interactions are themselves not sufficient for effective RNA binding; the additional loop L3 is crucial for RNA complex formation. A comparison is made between the structures of SRSF2-RNA complex with other known RNA complexes of SR proteins. We conclude that interactions involving the L3 loop, N- and C-termini of the RRM domain are collectively important for determining selectivity between the protein and RNA.


Asunto(s)
Proteínas Nucleares/química , ARN/química , Ribonucleoproteínas/química , Secuencia de Aminoácidos , Sitios de Unión , Calorimetría , Humanos , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis , Resonancia Magnética Nuclear Biomolecular , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , ARN/metabolismo , Ribonucleoproteínas/genética , Ribonucleoproteínas/metabolismo , Homología de Secuencia de Aminoácido , Factores de Empalme Serina-Arginina
15.
Cell Signal ; 119: 111169, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38599440

RESUMEN

Cardiac resident macrophages (CRMs) are essential in maintaining the balance of the immune homeostasis in the heart. One of the main factors in the progression of cardiovascular diseases, such as myocarditis, myocardial infarction(MI), and heart failure(HF), is the imbalance in the regulatory mechanisms of CRMs. Recent studies have reported novel heterogeneity and spatiotemporal complexity of CRMs, and their role in maintaining cardiac immune homeostasis and treating cardiovascular diseases. In this review, we focus on the functions of CRMs, including immune surveillance, immune phagocytosis, and immune metabolism, and explore the impact of CRM's homeostasis imbalance on cardiac injury and cardiac repair. We also discuss the therapeutic approaches linked to CRMs. The immunomodulatory strategies targeting CRMs may be a therapeutic approach for the treatment of cardiovascular disease.


Asunto(s)
Homeostasis , Macrófagos , Humanos , Macrófagos/inmunología , Macrófagos/metabolismo , Animales , Miocardio/inmunología , Miocardio/metabolismo , Miocardio/patología , Fagocitosis , Enfermedades Cardiovasculares/inmunología , Enfermedades Cardiovasculares/patología , Enfermedades Cardiovasculares/metabolismo
16.
J Biol Chem ; 287(45): 38231-43, 2012 Nov 02.
Artículo en Inglés | MEDLINE | ID: mdl-22989873

RESUMEN

Calcium-binding protein 7 (CaBP7) is a member of the calmodulin (CaM) superfamily that harbors two high affinity EF-hand motifs and a C-terminal transmembrane domain. CaBP7 has been previously shown to interact with and modulate phosphatidylinositol 4-kinase III-ß (PI4KIIIß) activity in in vitro assays and affects vesicle transport in neurons when overexpressed. Here we show that the N-terminal domain (NTD) of CaBP7 is sufficient to mediate the interaction of CaBP7 with PI4KIIIß. CaBP7 NTD encompasses the two high affinity Ca(2+) binding sites, and structural characterization through multiangle light scattering, circular dichroism, and NMR reveals unique properties for this domain. CaBP7 NTD binds specifically to Ca(2+) but not Mg(2+) and undergoes significant conformational changes in both secondary and tertiary structure upon Ca(2+) binding. The Ca(2+)-bound form of CaBP7 NTD is monomeric and exhibits an open conformation similar to that of CaM. Ca(2+)-bound CaBP7 NTD has a solvent-exposed hydrophobic surface that is more expansive than observed in CaM or CaBP1. Within this hydrophobic pocket, there is a significant reduction in the number of methionine residues that are conserved in CaM and CaBP1 and shown to be important for target recognition. In CaBP7 NTD, these residues are replaced with isoleucine and leucine residues with branched side chains that are intrinsically more rigid than the flexible methionine side chain. We propose that these differences in surface hydrophobicity, charge, and methionine content may be important in determining highly specific interactions of CaBP7 with target proteins, such as PI4KIIIß.


Asunto(s)
Proteínas de Unión al Calcio/metabolismo , Calcio/metabolismo , Aparato de Golgi/metabolismo , Espectroscopía de Resonancia Magnética/métodos , Secuencia de Aminoácidos , Animales , Sitios de Unión/genética , Western Blotting , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/genética , Bovinos , Dicroismo Circular , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Antígenos de Histocompatibilidad Menor , Modelos Moleculares , Datos de Secuencia Molecular , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Unión Proteica , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Transporte de Proteínas , Homología de Secuencia de Aminoácido , Soluciones , Propiedades de Superficie
17.
Bioorg Med Chem Lett ; 23(9): 2624-7, 2013 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-23545111

RESUMEN

Disrupting the interaction between the PDZ protein, PSD-95, and its target ligands (such as the glutamate NMDA receptor or the serotonin 5-HT2A receptor) was found to reduce hyperalgesia in various models of neuropathic pain. Here, we set out to identify lead molecules which would interact with PSD-95, and hence, would potentially display analgesic activity. We describe the virtual screening of the Asinex and Cambridge databases which together contain almost one million molecules. Using three successive docking filters and visual inspection, we identified three structural classes of molecules and synthesized a potential lead compound from each class. The binding of the molecules with the PDZ domains of PSD-95 was assessed by (1)H-(15)N HSQC NMR experiments. The analgesic activity of the best ligand, quinoline 2, was evaluated in vivo in a model of neuropathic pain and showed promising results.


Asunto(s)
Analgésicos/química , Diseño de Fármacos , Ligandos , Proteínas del Tejido Nervioso/química , Analgésicos/síntesis química , Analgésicos/uso terapéutico , Animales , Sitios de Unión , Simulación del Acoplamiento Molecular , Proteínas del Tejido Nervioso/metabolismo , Neuralgia/tratamiento farmacológico , Dominios PDZ , Quinolinas/química , Ratas , Receptor de Serotonina 5-HT2A/química , Receptor de Serotonina 5-HT2A/metabolismo , Receptores de N-Metil-D-Aspartato/antagonistas & inhibidores , Receptores de N-Metil-D-Aspartato/metabolismo , Proteínas Asociadas a SAP90-PSD95
18.
Guang Pu Xue Yu Guang Pu Fen Xi ; 33(3): 770-5, 2013 Mar.
Artículo en Zh | MEDLINE | ID: mdl-23705451

RESUMEN

With Chlorophyll Meter SPAD-502 and Canopy Analyzer AccuPAR LP-80, the spectra characteristic effect of different density-resistant maize variety on planting density was studied, and the effect of planting density on photosynthetic performance of maize was discussed. The materials of the experiment were Yinong-103, Xianyu-335, Zhengdan-958 and Denghai-661, the row spacing was 80 cm X 40 cm, the plant spacing was gradually changed from Im to smaller spacing, the densities were 3.33, 3.70, 4.17, 4.50, 4.76, 5.56, 6.67, 6.80, 8.33, 9.00, 11.11, 11.20 and 16.67 planting.m-2 respectively. We studied spectra characteristic effect on planting density, and investigated maize photosynthetic characteristics and density-yield relationship to get high yield. This research can be good case of using maize spectra characteristic to reflect plant photosynthetic characteristics and canopy architecture. The end of this paper was to explore density effect on yield with spectroscopy means.


Asunto(s)
Agricultura/métodos , Análisis Espectral/métodos , Zea mays/crecimiento & desarrollo , Zea mays/fisiología , Clorofila/análisis , Fotosíntesis/fisiología , Hojas de la Planta/fisiología , Zea mays/clasificación
19.
J Cardiovasc Transl Res ; 16(6): 1349-1356, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37432587

RESUMEN

Heart failure is a progressive disease with an annual mortality rate of about 10% and is the end-stage stage of various heart diseases, which places a huge socioeconomic burden on the healthcare system. The development of heart failure has received increasing attention as a potential way to improve the treatment of this disease. Many studies have shown that endoplasmic reticulum stress and autophagy play an important role in the occurrence and development of heart failure. With the in-depth study of endoplasmic reticulum stress and autophagy, both are considered promising targets for pharmacological interventions to treat heart failure, but the mechanism of heart failure between the two is not clear. This review will highlight the effects of endoplasmic reticulum stress, autophagy, and their interactions in the development and development of heart failure, thereby helping to provide direction for the future development of targeted therapies for patients with heart failure. CLINICAL RELEVANCE: This study explored the new targets for the treatment of heart failure: endoplasmic reticulum stress and autophagy. Targeted drug therapy for endoplasmic reticulum stress and autophagy is expected to provide a new intervention target for the treatment of heart failure.


Asunto(s)
Estrés del Retículo Endoplásmico , Insuficiencia Cardíaca , Humanos , Insuficiencia Cardíaca/tratamiento farmacológico , Autofagia , Apoptosis
20.
Sci Total Environ ; 899: 165556, 2023 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-37459997

RESUMEN

Soil organic carbon (SOC) sequestration is a key grassland ecosystem function, and the magnitude of SOC reservoirs depends on microbial involvement, especially that of fungi. Mycelia developed by macrofungi potentially influence carbon (C) fixation and decomposition; however, the mechanisms underlying their effects on SOC storage in grassland ecosystems remain poorly understood. The fairy rings formed by macrofungi in grasslands are natural platform for exploring macrofungal effects on SOC. In this study, we collected topsoil (0-10 cm) from four different fairy ring zones in a temperate steppe to reveal the macrofungal effects on SOC fractions, including particulate organic carbon (POC) and mineral-associated organic carbon (MAOC), and the SOC storage microbial mechanism using metagenomic sequencing technology. Both POC and MAOC decreased after macrofungal passage, resulting in a 7.37 % reduction in SOC. Macrofungal presence reduced microbial biomass carbon (MBC), but significantly enhanced the ß-1,4-glucosidase (BG) activity, which increased dissolved organic carbon (DOC). In addition, the abundance of copiotrophs (Proteobacteria and Bacteroidetes) with lower C metabolic rates increased, and that of oligotrophs (Actinobacteria, Acidobacteria, Chloroflexi, and Verrucomicrobia) with higher substrate utilization efficiency decreased in the presence of macrofungi. This may further promote SOC decomposition. Correspondingly, there was a lower abundance of C-fixation genes but more C-degradation genes (especially hemicellulosic degradation genes) during macrofungal passage. Our results indicate that the presence of macrofungi can modulate the soil microbial community and functional genes to reduce SOC storage by inhibiting microbial C sequestration while promoting C decomposition in grassland ecosystems. These findings refine our mechanistic understanding of SOC persistence through the interactions between macrofungi and other microbes.


Asunto(s)
Microbiota , Suelo , Suelo/química , Carbono/metabolismo , Microbiología del Suelo , Biomasa , Secuestro de Carbono
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