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1.

Functional impairment of HIV-specific CD8⁺ T cells precedes aborted spontaneous control of viremia.

Collins, David R; Urbach, Jonathan M; Racenet, Zachary J; Arshad, Umar; Power, Karen A; Newman, Ruchi M; Mylvaganam, Geetha H; Ly, Ngoc L; Lian, Xiaodong; Rull, Anna; Rassadkina, Yelizaveta; Yanez, Adrienne G; Peluso, Michael J; Deeks, Steven G; Vidal, Francesc; Lichterfeld, Mathias; Yu, Xu G; Gaiha, Gaurav D; Allen, Todd M; Walker, Bruce D.

Immunity ; 54(10): 2372-2384.e7, 2021 10 12.

Artículo en Inglés | MEDLINE | ID: mdl-34496223

2.

A VRC13-like bNAb response is associated with complex escape pathways in HIV-1 envelope.

Joshi, Vinita R; Claiborne, Daniel T; Pack, Melissa L; Power, Karen A; Newman, Ruchi M; Batorsky, Rebecca; Bean, David J; Goroff, Matthew S; Lingwood, Daniel; Seaman, Michael S; Rosenberg, Eric; Allen, Todd M.

J Virol ; 98(3): e0172023, 2024 Mar 19.

Artículo en Inglés | MEDLINE | ID: mdl-38412036

3.

Gp41-targeted antibodies restore infectivity of a fusion-deficient HIV-1 envelope glycoprotein.

Joshi, Vinita R; Newman, Ruchi M; Pack, Melissa L; Power, Karen A; Munro, James B; Okawa, Ken; Madani, Navid; Sodroski, Joseph G; Schmidt, Aaron G; Allen, Todd M.

PLoS Pathog ; 16(5): e1008577, 2020 05.

Artículo en Inglés | MEDLINE | ID: mdl-32392227

4.

Protective Efficacy of Broadly Neutralizing Antibodies with Incomplete Neutralization Activity against Simian-Human Immunodeficiency Virus in Rhesus Monkeys.

Julg, Boris; Sok, Devin; Schmidt, Stephen D; Abbink, Peter; Newman, Ruchi M; Broge, Thomas; Linde, Caitlyn; Nkolola, Joseph; Le, Khoa; Su, David; Torabi, Julia; Pack, Melissa; Pegu, Amarendra; Allen, Todd M; Mascola, John R; Burton, Dennis R; Barouch, Dan H.

J Virol ; 91(20)2017 10 15.

Artículo en Inglés | MEDLINE | ID: mdl-28768869

5.

Dengue Virus Evades AAV-Mediated Neutralizing Antibody Prophylaxis in Rhesus Monkeys.

Magnani, Diogo M; Ricciardi, Michael J; Bailey, Varian K; Gutman, Martin J; Pedreño-Lopez, Núria; Silveira, Cassia G T; Maxwell, Helen S; Domingues, Aline; Gonzalez-Nieto, Lucas; Su, Qin; Newman, Ruchi M; Pack, Melissa; Martins, Mauricio A; Martinez-Navio, José M; Fuchs, Sebastian P; Rakasz, Eva G; Allen, Todd M; Whitehead, Stephen S; Burton, Dennis R; Gao, Guangping; Desrosiers, Ronald C; Kallas, Esper G; Watkins, David I.

Mol Ther ; 25(10): 2323-2331, 2017 10 04.

Artículo en Inglés | MEDLINE | ID: mdl-28750738

6.

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment.

Di Giallonardo, Francesca; Geoghegan, Jemma L; Docherty, Douglas E; McLean, Robert G; Zody, Michael C; Qu, James; Yang, Xiao; Birren, Bruce W; Malboeuf, Christine M; Newman, Ruchi M; Ip, Hon S; Holmes, Edward C.

J Virol ; 90(2): 862-72, 2016 01 15.

Artículo en Inglés | MEDLINE | ID: mdl-26512086

7.

Global Diversity within and between Human Herpesvirus 1 and 2 Glycoproteins.

Lamers, Susanna L; Newman, Ruchi M; Laeyendecker, Oliver; Tobian, Aaron A R; Colgrove, Robert C; Ray, Stuart C; Koelle, David M; Cohen, Jeffrey; Knipe, David M; Quinn, Thomas C.

J Virol ; 89(16): 8206-18, 2015 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-26018161

8.

Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2.

Newman, Ruchi M; Lamers, Susanna L; Weiner, Brian; Ray, Stuart C; Colgrove, Robert C; Diaz, Fernando; Jing, Lichen; Wang, Kening; Saif, Sakina; Young, Sarah; Henn, Matthew; Laeyendecker, Oliver; Tobian, Aaron A R; Cohen, Jeffrey I; Koelle, David M; Quinn, Thomas C; Knipe, David M.

J Virol ; 89(16): 8219-32, 2015 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-26018166

9.

Gain-of-sensitivity mutations in a Trim5-resistant primary isolate of pathogenic SIV identify two independent conserved determinants of Trim5α specificity.

McCarthy, Kevin R; Schmidt, Aaron G; Kirmaier, Andrea; Wyand, Allison L; Newman, Ruchi M; Johnson, Welkin E.

PLoS Pathog ; 9(5): e1003352, 2013 May.

Artículo en Inglés | MEDLINE | ID: mdl-23675300

10.

Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants.

Newman, Ruchi M; Kuntzen, Thomas; Weiner, Brian; Berical, Andrew; Charlebois, Patrick; Kuiken, Carla; Murphy, Donald G; Simmonds, Peter; Bennett, Phil; Lennon, Niall J; Birren, Bruce W; Zody, Michael C; Allen, Todd M; Henn, Matthew R.

J Infect Dis ; 208(1): 17-31, 2013 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-23136221

11.

TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species.

Kirmaier, Andrea; Wu, Fan; Newman, Ruchi M; Hall, Laura R; Morgan, Jennifer S; O'Connor, Shelby; Marx, Preston A; Meythaler, Mareike; Goldstein, Simoy; Buckler-White, Alicia; Kaur, Amitinder; Hirsch, Vanessa M; Johnson, Welkin E.

PLoS Biol ; 8(8)2010 Aug 24.

Artículo en Inglés | MEDLINE | ID: mdl-20808775

12.

Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data.

Macalalad, Alexander R; Zody, Michael C; Charlebois, Patrick; Lennon, Niall J; Newman, Ruchi M; Malboeuf, Christine M; Ryan, Elizabeth M; Boutwell, Christian L; Power, Karen A; Brackney, Doug E; Pesko, Kendra N; Levin, Joshua Z; Ebel, Gregory D; Allen, Todd M; Birren, Bruce W; Henn, Matthew R.

PLoS Comput Biol ; 8(3): e1002417, 2012.

Artículo en Inglés | MEDLINE | ID: mdl-22438797

13.

Evolution of a TRIM5-CypA splice isoform in old world monkeys.

Newman, Ruchi M; Hall, Laura; Kirmaier, Andrea; Pozzi, Lu-Ann; Pery, Erez; Farzan, Michael; O'Neil, Shawn P; Johnson, Welkin.

PLoS Pathog ; 4(2): e1000003, 2008 Feb 29.

Artículo en Inglés | MEDLINE | ID: mdl-18389077

14.

Rhesus macaque TRIM5 alleles have divergent antiretroviral specificities.

Wilson, Sam J; Webb, Benjamin L J; Maplanka, Charlotte; Newman, Ruchi M; Verschoor, Ernst J; Heeney, Jonathan L; Towers, Greg J.

J Virol ; 82(14): 7243-7, 2008 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-18480454

15.

Structural topology defines protective CD8⁺ T cell epitopes in the HIV proteome.

Gaiha, Gaurav D; Rossin, Elizabeth J; Urbach, Jonathan; Landeros, Christian; Collins, David R; Nwonu, Chioma; Muzhingi, Itai; Anahtar, Melis N; Waring, Olivia M; Piechocka-Trocha, Alicja; Waring, Michael; Worrall, Daniel P; Ghebremichael, Musie S; Newman, Ruchi M; Power, Karen A; Allen, Todd M; Chodosh, James; Walker, Bruce D.

Science ; 364(6439): 480-484, 2019 05 03.

Artículo en Inglés | MEDLINE | ID: mdl-31048489

16.

A brief history of TRIM5alpha.

Newman, Ruchi M; Johnson, Welkin E.

AIDS Rev ; 9(2): 114-25, 2007.

Artículo en Inglés | MEDLINE | ID: mdl-17694678

17.

History and genomic sequence analysis of the herpes simplex virus 1 KOS and KOS1.1 sub-strains.

Colgrove, Robert C; Liu, Xueqiao; Griffiths, Anthony; Raja, Priya; Deluca, Neal A; Newman, Ruchi M; Coen, Donald M; Knipe, David M.

Virology ; 487: 215-21, 2016 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-26547038

18.

Genotype-specific variation in West Nile virus dispersal in California.

Duggal, Nisha K; Reisen, William K; Fang, Ying; Newman, Ruchi M; Yang, Xiao; Ebel, Gregory D; Brault, Aaron C.

Virology ; 485: 79-85, 2015 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-26210076

19.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan, Vivien G; Emrich, Scott J; Giraldo-Calderón, Gloria I; Harb, Omar S; Newman, Ruchi M; Pickett, Brett E; Schriml, Lynn M; Stockwell, Timothy B; Stoeckert, Christian J; Sullivan, Dan E; Singh, Indresh; Ward, Doyle V; Yao, Alison; Zheng, Jie; Barrett, Tanya; Birren, Bruce; Brinkac, Lauren; Bruno, Vincent M; Caler, Elizabet; Chapman, Sinéad; Collins, Frank H; Cuomo, Christina A; Di Francesco, Valentina; Durkin, Scott; Eppinger, Mark; Feldgarden, Michael; Fraser, Claire; Fricke, W Florian; Giovanni, Maria; Henn, Matthew R; Hine, Erin; Hotopp, Julie Dunning; Karsch-Mizrachi, Ilene; Kissinger, Jessica C; Lee, Eun Mi; Mathur, Punam; Mongodin, Emmanuel F; Murphy, Cheryl I; Myers, Garry; Neafsey, Daniel E; Nelson, Karen E; Nierman, William C; Puzak, Julia; Rasko, David; Roos, David S; Sadzewicz, Lisa; Silva, Joana C; Sobral, Bruno; Squires, R Burke; Stevens, Rick L.

PLoS One ; 9(6): e99979, 2014.

Artículo en Inglés | MEDLINE | ID: mdl-24936976

20.

Internally deleted WNV genomes isolated from exotic birds in New Mexico: function in cells, mosquitoes, and mice.

Pesko, Kendra N; Fitzpatrick, Kelly A; Ryan, Elizabeth M; Shi, Pei-Yong; Zhang, Bo; Lennon, Niall J; Newman, Ruchi M; Henn, Matthew R; Ebel, Gregory D.

Virology ; 427(1): 10-7, 2012 May 25.

Artículo en Inglés | MEDLINE | ID: mdl-22365325

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