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1.
Pestic Biochem Physiol ; 188: 105261, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-36464366

RESUMEN

Based on the previous finding that a substitution at 5-position of the benzene ring is favorable to enhance the degradation rates of sulfonylurea herbicides, a total of 16 novel 2,5-disubsituted sulfonylurea compounds were chemically synthesized and fully characterized by means of 1H NMR, 13C NMR, HRMS and X-ray diffraction. By using HPLC analysis, the degradation behavior of M03, a compound belonging to this family, was studied and confirmed that chlorsulfuron itself is not a degraded product of the 2,5-disubstituted sulfonylureas. Inhibition constants against plant acetohydroxyacid synthase (AHAS) were determined for selected compounds, among which SU3 showed seven times stronger activity against the mutant W574L enzyme than chlorsulfuron. Molecular docking suggested that the substituted group at 5-position of benzene ring is likely to interact with the surrounding residues Met200 and Asp376 of AtAHAS. From the greenhouse herbicidal assay and crop safety test, SU5 and SU6 are considered as herbicide candidates to control dicotyledon weeds in corn, while SU3 is likely to be a promising candidate to control dicotyledon weed species and barnyard grass in wheat. The present research has therefore provided some new insights to understand the structure-activity relationships of herbicidal sulfonylureas with di-substitutions at benzene ring.


Asunto(s)
Benceno , Herbicidas , Simulación del Acoplamiento Molecular , Compuestos de Sulfonilurea/farmacología , Sulfonamidas , Herbicidas/farmacología
2.
Biochem Biophys Res Commun ; 557: 20-25, 2021 06 11.
Artículo en Inglés | MEDLINE | ID: mdl-33857841

RESUMEN

Protoporphyrinogen IX oxidase (PPO) is the last common enzyme in chlorophyll and heme biosynthesis pathways. In human, point mutations on PPO are responsible for the dominantly inherited disorder disease, Variegate Porphyria (VP). Of the VP-causing mutation site, the Arg59 is by far the most prevalent VP mutation residue identified. Multiple sequences alignment of PPOs shows that the Arg59 of human PPO (hPPO) is not conserved, and experiments have shown that the equivalent residues in PPO from various species are essential for enzymatic activity. In this work, it was proposed that the Arg59 performs its function by forming a hydrogen-bonding (HB) network around it in hPPO, and we investigated the role of the HB network via site-directed mutagenesis, enzymatic kinetics and computational studies. We found the integrity of the HB network around Arg59 is important for enzyme activity. The HB network maintains the substrate binding chamber by holding the side chain of Arg59, while it stabilizes the micro-environment of the isoalloxazine ring of FAD, which is favorable for the substrate-FAD interaction. Our result provides a new insight to understanding the relationship between the structure and function for hPPO that non-conserved residues can form a conserved element to maintain the function of protein.


Asunto(s)
Arginina/química , Arginina/metabolismo , Protoporfirinógeno-Oxidasa/química , Protoporfirinógeno-Oxidasa/metabolismo , Secuencia de Aminoácidos , Arginina/genética , Pruebas de Enzimas/métodos , Humanos , Enlace de Hidrógeno , Cinética , Modelos Moleculares , Mutagénesis Sitio-Dirigida/métodos , Elementos Estructurales de las Proteínas , Protoporfirinógeno-Oxidasa/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Relación Estructura-Actividad
3.
Anal Chem ; 91(21): 13582-13590, 2019 11 05.
Artículo en Inglés | MEDLINE | ID: mdl-31603309

RESUMEN

Acetohydroxyacid synthase (AHAS) exists in plants and many microorganisms (including gut flora) but not in mammals, making it an attractive drug target. Fluorescent-based methods should be practical for high-throughput screening of inhibitors. Herein, we describe the development of the first AHAS fluorogenic assay based on an intramolecular charge transfer (ICT)-based fluorescent probe. The assay is facile, sensitive, and continuous and can be applied toward various AHASs from different species, AHAS mutants, and crude cell lysates. The fluorogenic assay was successfully applied for (1) high-throughput screening of commerical herbicides toward different AHASs for choosing matching herbicides, (2) identification of a Soybean AHAS gene with broad-spectrum herbicide resistance, and (3) identification of selective inhibitors toward intestinal-bacterial AHASs. Among the AHAS inhibitors, an active agent was found for selective inhibition of obesity-associated Ruminococcus torques growth, implying the possibility of AHAS inhibitors for the ultimate goal toward antiobesity therapeutics. The fluorogenic assay opens the door for high-throughput programs in AHAS-related fields, and the design principle might be applied for development of fluorogenic assays of other synthases.


Asunto(s)
Acetolactato Sintasa/análisis , Colorantes Fluorescentes/química , Acetolactato Sintasa/antagonistas & inhibidores , Acetolactato Sintasa/genética , Antibacterianos/farmacología , Inhibidores Enzimáticos/farmacología , Microbioma Gastrointestinal , Resistencia a los Herbicidas/genética , Ensayos Analíticos de Alto Rendimiento , Humanos
4.
Chembiochem ; 19(22): 2387-2394, 2018 11 16.
Artículo en Inglés | MEDLINE | ID: mdl-30225979

RESUMEN

Acetohydroxyacid synthase (AHAS), which catalyzes the first step in the biosynthesis of branched-chain amino acids, is a target of several types of potent herbicides and antimicrobials. AHAS contains the catalytic subunit (CS) and the regulatory subunit (RS). The AHAS RS is usually composed of ACT domains and C-terminal domains. Herein, it is reported that the ACT domain of AHAS RS from different species could efficiently activate its respective CS. Moreover, the universal cross-activation between the CSs and the ACT domains of RSs across species has been discovered. Based on these biochemical and structural analyses, a molecular basis for the universal ACT-triggered CS activation is proposed, which would help to design broad-spectrum herbicides by targeting the interaction interface between CS and ACT from different species.


Asunto(s)
Acetolactato Sintasa/química , Arabidopsis/enzimología , Brassica napus/enzimología , Dominio Catalítico , Escherichia coli/enzimología , Saccharomyces cerevisiae/enzimología , Acetolactato Sintasa/genética , Modelos Moleculares , Unión Proteica
5.
Chembiochem ; 14(6): 746-52, 2013 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-23512804

RESUMEN

Acetohydroxyacid synthases (AHASs), which catalyze the first step in the biosynthesis of branched-chain amino acids, are composed of a catalytic subunit (CSU) and a regulatory subunit (RSU). The CSU harbors the catalytic site, and the RSU is responsible for the activation and feedback regulation of the CSU. Previous results from Chipman and co-workers and our lab have shown that heterologous activation can be achieved among isozymes of Escherichia coli AHAS. It would be interesting to find the minimum peptide of ilvH (the RSU of E. coli AHAS III) that could activate other E. coli CSUs, or even those of ## species. In this paper, C-terminal, N-terminal, and C- and N-terminal truncation mutants of ilvH were constructed. The minimum peptide to activate ilvI (the CSU of E. coli AHAS III) was found to be ΔN 14-ΔC 89. Moreover, this peptide could not only activate its homologous ilvI and heterologous ilvB (CSU of E. coli AHAS I), but also heterologously activate the CSUs of AHAS from Saccharomyces cerevisiae, Arabidopsis thaliana, and Nicotiana plumbaginifolia. However, this peptide totally lost its ability for feedback regulation by valine, thus suggesting different elements for enzymatic activation and feedback regulation. Additionally, the apparent dissociation constant (Kd ) of ΔN 14-ΔC 89 when binding CSUs of different species was found to be 9.3-66.5 µM by using microscale thermophoresis. The ability of this peptide to activate different CSUs does not correlate well with its binding ability (Kd ) to these CSUs, thus implying that key interactions by specific residues is more important than binding ability in promoting enzymatic reactions. The high sequence similarity of the peptide ΔN 14-ΔC 89 to RSUs across species hints that this peptide represents the minimum activation motif in RSU and that it regulates all AHASs.


Asunto(s)
Acetolactato Sintasa/metabolismo , Arabidopsis/enzimología , Proteínas de Escherichia coli/metabolismo , Escherichia coli/enzimología , Nicotiana/enzimología , Saccharomyces cerevisiae/enzimología , Acetolactato Sintasa/química , Acetolactato Sintasa/genética , Secuencia de Aminoácidos , Arabidopsis/química , Dominio Catalítico , Activación Enzimática , Escherichia coli/química , Escherichia coli/genética , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Modelos Moleculares , Datos de Secuencia Molecular , Mutación , Péptidos/química , Péptidos/metabolismo , Saccharomyces cerevisiae/química , Alineación de Secuencia , Nicotiana/química
6.
Bioorg Med Chem Lett ; 23(13): 3723-7, 2013 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-23726033

RESUMEN

46 Novel nonsymmetrical aromatic disulfides containing [1,3,4]thiadiazole or [1,3,4]oxadiazole groups were synthesized and their biological activities were evaluated as inhibitors of acetohydroxyacid synthase (AHAS, EC 2.2.1.6). Besides their strong in vitro inhibition against plant AHAS, compounds 3e and 3f also display 80-100% post-emergence herbicidal activities in greenhouse bioassay at 1500g /ha dosage. The assay of exogenous branched-chain amino acids supplementation on rape root growth of 3e suggests that the herbicidal activity has relationship with AHAS inhibition.


Asunto(s)
Acetolactato Sintasa/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Hidrocarburos Aromáticos/farmacología , Sulfuros/farmacología , Acetolactato Sintasa/metabolismo , Arabidopsis/enzimología , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Hidrocarburos Aromáticos/síntesis química , Hidrocarburos Aromáticos/química , Estructura Molecular , Oxadiazoles/química , Relación Estructura-Actividad , Sulfuros/síntesis química , Sulfuros/química , Tiadiazoles/química
7.
Pest Manag Sci ; 79(5): 1885-1896, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-36700288

RESUMEN

BACKGROUND: In order to design compounds with fresh molecular skeleton to break through the limitation of available agrochemicals, a series of 36 novel selenenyl sulfide compounds were chemically synthesized, and their biological activities were fully evaluated against tobacco mosaic virus (TMV), 14 plant pathogenic fungi, three insect species and plant acetohydroxyacid synthase (AHAS). RESULTS: All the target compounds were characterized by proton nuclear magnetic resonance (1 H-NMR), carbon-13 (13 C)-NMR, selenium-77 (77 Se)-NMR, and high-resolution mass spectrometry (HRMS). The crystal structure of 10j indicated that the Se-S bond was successfully constructed. Compounds 10d, 10h, 10s, 10u, 10aa, 10ac, 10ae, 10ag, and 10ai exhibited 40%, 43%, 39%, 41%, 47%, 46%, 47%, 42%, and 39% anti-TMV activities at 500 mg L-1 , better than that of ribavirin. The median effective concentration (EC50 ) against Sclerotinia sclerotiorum of 10ac was 6.69 mg L-1 and EC50 values against Physalospora piricola and Pyricularia grisea of 10z were 12.25 mg L-1 and 15.27 mg L-1 , respectively, superior to the corresponding values of chlorothalonil. Compounds 10c and 10v demonstrated 100% larvicidal activity against Culex pipiens pallens at 5 mg L-1 , while 10a displayed 100% insecticidal activity against Mythimna separata at 200 mg L-1 . Compounds 10c, 10j, and 10o showed > 60% inhibitions against plant AHAS at 10 µmol L-1 . From the quantum calculation, highest occupied molecular orbital (HOMO) was considered as a factor that affects the anti-TMV activity. CONCLUSION: The preliminary results suggested that more efforts should be devoted to exploring the selenenyl sulfides for the discovery of new leads of antiviral agent, fungicide, insecticide or AHAS inhibitors as potential agrochemicals for crop protection. © 2023 Society of Chemical Industry.


Asunto(s)
Fungicidas Industriales , Insecticidas , Mariposas Nocturnas , Virus del Mosaico del Tabaco , Animales , Relación Estructura-Actividad , Fungicidas Industriales/química , Antivirales , Insecticidas/química , Sulfuros/farmacología , Estructura Molecular , Diseño de Fármacos
8.
Chembiochem ; 13(16): 2445-54, 2012 Nov 05.
Artículo en Inglés | MEDLINE | ID: mdl-23047433

RESUMEN

Acetohydroxyacid synthase (AHAS), which catalyzes the first step in the biosynthesis of branched-chain amino acids, is composed of catalytic and regulatory subunits. The enzyme exhibits full activity only when the regulatory subunit (RSU) binds to the catalytic subunit (CSU). However, the crystal structure of the holoenzyme has not been reported yet, and the molecular interaction between the CSU and RSU is also unknown. Herein, we introduced a global-surface, site-directed labeling scanning method to determine the potential interaction region of the RSU. This approach relies on the insertion of a bulky fluorescent probe at the designated site on the surface of the RSU to cause a dramatic change in holoenzyme activity by perturbing subunit interaction. Then, the key amino acid residues in the potential interaction regions were identified by site-directed mutagenesis. Compared to the wild-type, the single-point mutants R26A and D69A showed 54 and 64 % activity, respectively, whereas the double mutant (R26A+D69A) gave 14 %, thus suggesting that residues Arg26 and Asp69 are the key residues of subunit interaction with cooperative action. Additionally, the results of GST pull-down assays and pH-dependence experiments suggested that polar interaction is the main force for subunits interaction. A plausible protein-protein interaction model of the holoenzyme of Escherichia coli AHAS III is proposed, based on the mutagenesis and protein docking studies. The protocol established here should be useful for the identification of the molecular interactions between proteins.


Asunto(s)
Acetolactato Sintasa/química , Arginina/metabolismo , Ácido Aspártico/metabolismo , Escherichia coli/enzimología , Subunidades de Proteína/química , Subunidades de Proteína/metabolismo , Acetolactato Sintasa/genética , Acetolactato Sintasa/metabolismo , Arginina/genética , Ácido Aspártico/genética , Activación Enzimática , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Modelos Moleculares , Subunidades de Proteína/genética
9.
J Agric Food Chem ; 70(9): 2817-2824, 2022 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-35192362

RESUMEN

The development of herbicide-resistant germplasm is significant in solving the increasingly severe weed problem in crop fields. In this study, we, for the first time, rationally designed a predictable and effective approach to create herbicide-resistant germplasm by combining mutation-dependent biomacromolecular quantitative structure-activity relationship (MB-QSAR) and CRISPR/Cas9-mediated base-editing strategies. Our results showed that the homozygous P197F-G654D-G655S or P197F-G654N-G655S Arabidopsis plants exhibited high resistance to multiple acetohydroxyacid synthase-inhibiting herbicides, including chlorsulfuron, bispyribac-sodium, and flucarbazone-sodium. Additionally, the plants with the homozygous P197S mutant displayed increased susceptibility to bispyribac-sodium than the wild-type but more resistance to flumetsulam than other mutants. Besides, we found that the herbicide resistance levels of the gene-edited plants have a good correlation with MB-QSAR prediction.


Asunto(s)
Acetolactato Sintasa , Herbicidas , Acetolactato Sintasa/genética , Acetolactato Sintasa/metabolismo , Sistemas CRISPR-Cas , Resistencia a los Herbicidas/genética , Herbicidas/farmacología , Relación Estructura-Actividad Cuantitativa
10.
Chem Biol Drug Des ; 100(4): 487-501, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-35792871

RESUMEN

A series of 51 novel sulfonylurea compounds with ortho-alkoxy substituent at phenyl ring were chemically synthesized and spectroscopically characterized. The biological activities of the target compounds were evaluated using the enzyme inhibition against acetohydroxyacid synthase (AHAS; EC 2.2.1.6) from fungal or plant source, as well as cell-based antifungal assay and greenhouse pot herbicidal assay. Among the target compounds, 6e showed desirable antifungal activity against Candida albicans standard isolate sc5314 with minimum inhibition concentration (MIC) of 0.39 mg/L (0.98 µM) after 24 h, and 6a demonstrated promising pre-emergence herbicidal activity against Echinochloacrus-galli at 30 g/ha dosage. Representative compounds 6a, 6e, and 6i showed no cell cytotoxicity even at 40 mg/L concentration. Theoretical DFT calculations indicated HOMO maps should be considered to understand the structure-activity relationships. The present study has hence provided useful information for further discovery of novel antifungal agents or selective herbicides.


Asunto(s)
Acetolactato Sintasa , Herbicidas , Acetolactato Sintasa/química , Acetolactato Sintasa/metabolismo , Alcoholes , Antifúngicos/química , Antifúngicos/farmacología , Inhibidores Enzimáticos/química , Herbicidas/química , Herbicidas/farmacología , Relación Estructura-Actividad , Compuestos de Sulfonilurea/farmacología
11.
Artículo en Inglés | MEDLINE | ID: mdl-21636904

RESUMEN

Acetohydroxyacid synthase (AHAS) is the first common enzyme in the branched-chain amino-acid biosynthesis pathway and is the target of several classes of commercial herbicides. In this study, the Escherichia coli ilvG gene that encodes the catalytic subunit of AHAS II was cloned into the pET28a vector and expressed in soluble form at high levels in E. coli strain BL21 (DE3) cells. The protein was purified using Ni(2+)-chelating chromatography followed by size-exclusion chromatography. The catalytic subunit of E. coli AHAS II was cocrystallized with its cofactors Mg(2+), FAD and ThDP using the sitting-drop vapour-diffusion method and the crystals diffracted to 2.80 Šresolution.


Asunto(s)
Acetolactato Sintasa/química , Dominio Catalítico , Escherichia coli/enzimología , Flavina-Adenina Dinucleótido/química , Magnesio/química , Tiamina Pirofosfato/química , Cristalografía por Rayos X , Modelos Moleculares
12.
J Agric Food Chem ; 69(30): 8415-8427, 2021 Aug 04.
Artículo en Inglés | MEDLINE | ID: mdl-34283603

RESUMEN

In the present study, we have designed and synthesized a series of 42 novel sulfonylurea compounds with ortho-alkoxy substitutions at the phenyl ring and evaluated their herbicidal activities. Some target compounds showed excellent herbicidal activity against monocotyledon weed species. When applied at 7.5 g ha-1, 6-11 exhibited more potent herbicidal activity against barnyard grass (Echinochloa crus-galli) and crab grass (Digitaria sanguinalis) than commercial acetohydroxyacid synthase (AHAS; EC 2.2.1.6) inhibitors triasulfuron, penoxsulam, and nicosulfuron at both pre-emergence and postemergence conditions. 6-11 was safe for peanut for postemergence application at this ultralow dosage, suggesting that it could be considered a potential herbicide candidate for peanut fields. Although 6-11 and triasulfuron share similar chemical structures and have close Ki values for plant AHAS, a significant difference has been observed between their LUMO maps from DFT calculations, which might be a possible factor that leads to their different behaviors toward monocotyledon weed species.


Asunto(s)
Herbicidas , Alcoholes , Digitaria , Herbicidas/farmacología , Relación Estructura-Actividad , Compuestos de Sulfonilurea/farmacología
13.
Bioorg Med Chem ; 18(14): 4897-904, 2010 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-20598554

RESUMEN

The triazolopyrimidine-2-sulfonanilide, discovered from preparing bioisosteres of the sulfonylurea herbicides, is an important class of acetohydroxyacid synthase (AHAS, EC 4.1.3.18) inhibitors. At least over ten triazolopyrimidine sulfonanilides have been commercialized as herbicides for the control of broadleaf weeds and grass with cereal crop selectivity. Herein, a series of triazolopyrimidine-2-sulfonanilides were designed and synthesized with the aim of discovery of new herbicides with higher activity. The assay results of the inhibition activity of the synthesized compounds against Arabidopsis thatiana AHAS indicated that some compounds showed a little higher activity against flumetsulam (FS), the first commercial triazolopyrimidine-2-sulfonanilide-type herbicide. The ki values of two promising compounds 3d and 8h are respectively, 1.61 and 1.29 microM, while that of FS is 1.85 microM. Computational simulation results indicated the ester group of compound 3d formed hydrogen bonds with the surrounding residues Arg'198 and Ser653, which accounts for its 11.5-folds higher AHAS inhibition activity than Y6610. Further green house assay showed that compound 3d has comparable herbicidal activity as FS. Even at the concentration of 37.5g.ai/ha, 3d showed excellent herbicidal activity against Galium aparine, Cerastium arvense, Chenopodium album, Amaranthus retroflexus, and Rmumex acetasa, moderate herbicidal activity against Polygonum humifusum, Cyperus iria, and Eclipta prostrate. The combination of in vitro and in vivo assay indicated that 3d could be regarded as a new potential acetohydroxyacid synthase-inhibiting herbicide candidate for further study.


Asunto(s)
Acetolactato Sintasa/antagonistas & inhibidores , Acetolactato Sintasa/metabolismo , Arabidopsis/enzimología , Compuestos Bicíclicos Heterocíclicos con Puentes/síntesis química , Compuestos Bicíclicos Heterocíclicos con Puentes/farmacología , Herbicidas/síntesis química , Herbicidas/farmacología , Sulfonamidas/síntesis química , Sulfonamidas/farmacología , Acetolactato Sintasa/química , Compuestos Bicíclicos Heterocíclicos con Puentes/química , Herbicidas/química , Modelos Moleculares , Unión Proteica , Sulfonamidas/química
14.
J Med Chem ; 63(17): 9212-9227, 2020 09 10.
Artículo en Inglés | MEDLINE | ID: mdl-32787087

RESUMEN

Tuberculosis is an infectious disease caused by the bacterium Mycobacterium tuberculosis (Mtb). Mtb protein tyrosine phosphatase B (mPTPB) is a virulence factor required for Mtb survival in host macrophages. Consequently, mPTPB represents an exciting target for tuberculosis treatment. Here, we identified N-phenyl oxamic acid as a highly potent and selective monoacid-based phosphotyrosine mimetic for mPTPB inhibition. SAR studies on the initial hit, compound 4 (IC50 = 257 nM), resulted in several highly potent inhibitors with IC50 values lower than 20 nM for mPTPB. Among them, compound 4t showed a Ki of 2.7 nM for mPTPB with over 4500-fold preference over 25 mammalian PTPs. Kinetic, molecular docking, and site-directed mutagenesis analyses confirmed these compounds as active site-directed reversible inhibitors of mPTPB. These inhibitors can reverse the altered host cell immune responses induced by the bacterial phosphatase. Furthermore, the inhibitors possess molecular weights <400 Da, log D7.4 < 2.5, topological polar surface area < 75, ligand efficiency > 0.43, and good aqueous solubility and metabolic stability, thus offering excellent starting points for further therapeutic development.


Asunto(s)
Antituberculosos/química , Proteínas Bacterianas/antagonistas & inhibidores , Mycobacterium tuberculosis/enzimología , Ácido Oxámico/química , Proteínas Tirosina Fosfatasas/antagonistas & inhibidores , Animales , Antituberculosos/metabolismo , Antituberculosos/farmacología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Dominio Catalítico , Permeabilidad de la Membrana Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Diseño de Fármacos , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/metabolismo , Inhibidores Enzimáticos/farmacología , Cinética , Ratones , Microsomas Hepáticos/metabolismo , Simulación del Acoplamiento Molecular , Mutagénesis Sitio-Dirigida , Mycobacterium tuberculosis/efectos de los fármacos , Ácido Oxámico/metabolismo , Ácido Oxámico/farmacología , Proteínas Tirosina Fosfatasas/genética , Proteínas Tirosina Fosfatasas/metabolismo , Células RAW 264.7 , Relación Estructura-Actividad
15.
Pest Manag Sci ; 76(10): 3403-3412, 2020 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31943722

RESUMEN

BACKGROUND: Intensifying weed resistance has challenged the use of existing acetohydroxyacid synthase (AHAS)-inhibiting herbicides. Hence, there is currently an urgent requirement for the discovery of a new AHAS inhibitor to effectively control AHAS herbicide-resistant weed species produced by target mutation. RESULTS: To combat weed resistance caused by AHAS with P197L mutation, we built a structure library consisting of pyrimidinyl-salicylic acid derivatives. Using the pharmacophore-linked fragment virtual screening (PFVS) approach, hit compound 8 bearing 6-phenoxymethyl substituent was identified as a potential AHAS inhibitor with antiresistance effect. Subsequently, derivatives of compound 8 were synthesized and evaluated for their inhibitory activities. The study of the enzyme-based structure-activity relationship and structure-resistance relationship studies led to the discovery of a qualified candidate, 28. This compound not only significantly inhibited the activity of wild-type Arabidopsis thaliana (At) AHAS and P197L mutant, but also exhibited good antiresistance properties (RF = 0.79). Notably, compared with bispyribac at 37.5-150 g of active ingredient per hectare (g a.i. ha-1 ), compound 27 exhibited higher growth inhibition against both sensitive and resistant Descurainia sophia, CONCLUSION: The title compounds have great potential to be developed as new leads to effectively control herbicide-resistant weeds comprising AHAS with P197L mutation. Also, our study provided a positive case for discovering novel, potent and antiresistance inhibitors using a fragment-based drug design approach.


Asunto(s)
Acetolactato Sintasa/genética , Arabidopsis , Herbicidas , Malezas , Relación Estructura-Actividad
16.
Amino Acids ; 37(3): 523-30, 2009 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-19266155

RESUMEN

Protoporphyrinogen IX oxidase (PPO), the last common enzyme of heme and chlorophyll biosynthesis, catalyses the oxidation of protoporphyrinogen IX to protoporphyrin IX, with FAD as cofactor. Among PPO, Bacillus subtilis PPO (bsPPO) is unique because of its broad substrate specificity and resistance to inhibition by diphenylethers. Identification of the activity of bsPPO would help us to understand the catalysis and resistance mechanisms. Based on the modeling and docking studies, we found that Y366 site in bsPPO was adjacent to substrate and FAD. In order to evaluate the functional role of this site, three mutants Y366A Y366E and Y366H were cloned and kinetically characterized. The efficiency of catalysis for Y366A and Y366H reduced to 10% of the wild-type enzyme's activity, while Y366E just retained 1%. Y366E shows large resistance (K (i) = 153.94 microM) to acifluorfen. Molecular docking was carried out to understand the structure and functional relationship of PPO. The experimental results from the site-directed mutagenesis are consistent with the computational studies. The residue at position 366 is seemed to be responsible for substrate binding and catalysis and involved in herbicide resistance of bsPPO.


Asunto(s)
Bacillus subtilis/enzimología , Dominio Catalítico/genética , Biología Computacional/métodos , Mutagénesis Sitio-Dirigida , Unión Proteica , Protoporfirinógeno-Oxidasa/química , Bacillus subtilis/genética , Biocatálisis , Dicroismo Circular , Simulación por Computador , Inhibidores Enzimáticos/metabolismo , Inhibidores Enzimáticos/farmacología , Flavina-Adenina Dinucleótido/metabolismo , Cinética , Modelos Moleculares , Proteínas Mutantes/biosíntesis , Proteínas Mutantes/metabolismo , Nitrobenzoatos/metabolismo , Nitrobenzoatos/farmacología , Oxidación-Reducción , Protoporfirinógeno-Oxidasa/antagonistas & inhibidores , Protoporfirinógeno-Oxidasa/genética , Protoporfirinógeno-Oxidasa/metabolismo , Protoporfirinas/metabolismo , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/metabolismo
17.
Bioorg Med Chem ; 17(8): 3011-7, 2009 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-19342247

RESUMEN

Triazolopyrimidine-2-sulfonamide belongs to a herbicide group called acetohydroxyacid synthase inhibitors. With the aim to discover new triazolopyrimidine sulfonanilide compounds with high herbicidal activity and faster degradation rate in soil, the methyl group of Flumetsulam (FS) was modified into a methoxy group to produce a new herbicidal compound, N-2,6-difluorophenyl-5-methoxy-1,2,4-triazolo[1,5-a]pyrimidine-2-sulfonamide (experimental code: Y6610). The enzymatic kinetic results indicated that compound Y6610 and FS have k(i) values of 3.31x10(-6) M and 3.60x10(-7) M against Arabidopsis thaliana AHAS, respectively. The 10-fold lower enzyme-inhibiting activity of Y6610 was explained rationally by further computational simulations and binding free energy calculations. In addition, compound Y6610 was found to display the same level in vivo post-emergent herbicidal activity as FS against some broad-leaf weeds and good safety to rice, maize, and wheat at the dosages of 75-300 gai/ha. Further determination of the half-lives in soil revealed that the half-life in soil of Y6610 is 3.9 days shorter than that of FS. The experimental results herein showed that compound Y6610 could be regarded as a new potential acetohydroxyacid synthase-inhibiting herbicide candidate for further study.


Asunto(s)
Acetolactato Sintasa/antagonistas & inhibidores , Herbicidas/síntesis química , Pirimidinas/síntesis química , Sulfonamidas/síntesis química , Acetolactato Sintasa/metabolismo , Arabidopsis , Sitios de Unión , Simulación por Computador , Diseño de Fármacos , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Herbicidas/química , Humanos , Cinética , Modelos Moleculares , Plantas Modificadas Genéticamente , Pirimidinas/química , Relación Estructura-Actividad , Sulfonamidas/química
18.
Eur J Med Chem ; 162: 348-363, 2019 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-30448420

RESUMEN

Accetohydroxyacid synthase (AHAS) is the first enzyme involved in the biosynthetic pathway of branched-chain amino acids. Earlier gene mutation of Candida albicans in a mouse model suggested that this enzyme is a promising target of antifungals. Recent studies have demonstrated that some commercial AHAS-inhibiting sulfonylurea herbicides exerted desirable antifungal activity. In this study, we have designed and synthesized 68 novel ethoxysulfulron (ES) derivatives and evaluated their inhibition constants (Ki) against C. albicans AHAS and cell based minimum inhibitory concentration (MIC) values. The target compounds 5-1, 5-10, 5-22, 5-31 and 5-37 displayed stronger AHAS inhibitions than ES did. Compound 5-1 had the best Ki of 6.7 nM against fungal AHAS and MIC values of 2.5 mg/L against Candida albicans and Candica parapsilosis after 72 h. A suitable nematode model was established here and the antifungal activity of 5-1 was further evaluated in vivo. A possible binding mode was simulated via molecular docking and a comparative field analysis (CoMFA) model was constructed to understand the structure-activity relationship. The current study has indicated that some ES derivatives should be considered as promising hits to develop antifungal drugs with novel biological target.


Asunto(s)
Acetolactato Sintasa/antagonistas & inhibidores , Antifúngicos/química , Relación Estructura-Actividad Cuantitativa , Compuestos de Sulfonilurea/farmacología , Animales , Antifúngicos/farmacología , Candida albicans/efectos de los fármacos , Inhibidores Enzimáticos/farmacología , Herbicidas , Ratones , Simulación del Acoplamiento Molecular , Nematodos/efectos de los fármacos , Compuestos de Sulfonilurea/química
19.
Eur J Med Chem ; 167: 472-484, 2019 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-30784880

RESUMEN

Since pyrithiobac (PTB) is a successful commercial herbicide with very low toxicity against mammals, it is worth exploring its derivatives for an extensive study. Herein, a total of 35 novel compounds were chemically synthesized and single crystal of 6-6 was obtained to confirm the molecular structure of this family of compounds. The novel PTB derivatives were fully evaluated against various biological platforms. From the bioassay results, the best AHAS inhibitor 6-22 displayed weaker herbicidal activity but stronger anti-Candida activity than PTB did. For plant pathogenic fungi, 6-26 showed excellent activity at 50 mg/L dosage. Preliminary insecticidal activity and antiviral activity were also observed for some title compounds. Strikingly, 6-5 exhibited a promising inhibitory activity against SARS-CoV Mpro with IC50 of 4.471 µM and a low cellular cytotoxicity against mammalian 293 T cells. Based on the results of molecular modeling, HOMO-1 was considered to be a factor that affects AHAS inhibition and a possible binding mode of 6-5 with SARS-CoV Mpro was predicted. This is the first time that PTB derivatives have been studied as biological agents other than herbicides. The present research hence has suggested that more attentions should be paid to compounds belonging to this family to develop novel agrochemicals or medicines.


Asunto(s)
Benzoatos/síntesis química , Benzoatos/farmacología , Hongos/efectos de los fármacos , Herbicidas/síntesis química , Acetolactato Sintasa/antagonistas & inhibidores , Antivirales/síntesis química , Antivirales/farmacología , Benzoatos/química , Diseño de Fármacos , Herbicidas/farmacología , Herbicidas/uso terapéutico , Modelos Moleculares , Estructura Molecular , Coronavirus Relacionado al Síndrome Respiratorio Agudo Severo/efectos de los fármacos
20.
J Agric Food Chem ; 66(15): 3773-3782, 2018 Apr 18.
Artículo en Inglés | MEDLINE | ID: mdl-29618205

RESUMEN

The issue of weed resistance to acetohydroxyacid synthase (EC 2.2.1.6, AHAS) inhibitors has become one of the largest obstacles for the application of this class of herbicides. In a continuing effort to discover novel AHAS inhibitors to overcome weed resistance, a series of pyrimidine-biphenyl hybrids (4aa-bb and 5aa-ah) were designed and synthesized via a scaffold hopping strategy. Among these derivatives, compounds 4aa ( Ki = 0.09 µM) and 4bb ( Ki = 0.02 µM) displayed higher inhibitory activities against Arabidopsis thaliana AHAS than those of the controls bispyribac ( Ki = 0.54 µM) and flumetsulam ( Ki = 0.38 µM). Remarkably, compounds 4aa, 4bb, 5ah, and 5ag exhibited excellent postemergence herbicidal activity and a broad spectrum of weed control at application rates of 37.5-150 g of active ingredient (ai)/ha. Furthermore, 4aa and 4bb showed higher herbicidal activity against AHAS inhibitor-resistant Descurainia sophia, Ammannia arenaria, and the corresponding sensitive weeds than that of bispyribac at 0.94-0.235 g ai/ha. Therefore, the pyrimidine-biphenyl motif and lead compounds 4aa and 4bb have great potential for the discovery of novel AHAS inhibitors to combat AHAS-inhibiting herbicide-resistant weeds.


Asunto(s)
Acetolactato Sintasa/antagonistas & inhibidores , Compuestos de Bifenilo/química , Inhibidores Enzimáticos/química , Herbicidas/química , Proteínas de Plantas/antagonistas & inhibidores , Pirimidinas/química , Acetolactato Sintasa/química , Arabidopsis/efectos de los fármacos , Arabidopsis/enzimología , Compuestos de Bifenilo/síntesis química , Brassicaceae/efectos de los fármacos , Brassicaceae/enzimología , Diseño de Fármacos , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Herbicidas/síntesis química , Herbicidas/farmacología , Cinética , Proteínas de Plantas/química , Malezas/efectos de los fármacos , Malezas/enzimología , Relación Estructura-Actividad , Control de Malezas
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