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1.
BMC Med Res Methodol ; 22(1): 125, 2022 04 28.
Artículo en Inglés | MEDLINE | ID: mdl-35484483

RESUMEN

BACKGROUND: The health crisis resulting from the global COVID-19 pandemic highlighted more than ever the need for rapid, reliable and safe methods of diagnosis and monitoring of respiratory diseases. To study pulmonary involvement in detail, one of the most common resources is the use of different lung imaging modalities (like chest radiography) to explore the possible affected areas. METHODS: The study of patient characteristics like sex and age in pathologies of this type is crucial for gaining knowledge of the disease and for avoiding biases due to the clear scarcity of data when developing representative systems. In this work, we performed an analysis of these factors in chest X-ray images to identify biases. Specifically, 11 imbalance scenarios were defined with female and male COVID-19 patients present in different proportions for the sex analysis, and 6 scenarios where only one specific age range was used for training for the age factor. In each study, 3 different approaches for automatic COVID-19 screening were used: Normal vs COVID-19, Pneumonia vs COVID-19 and Non-COVID-19 vs COVID-19. The study was validated using two public chest X-ray datasets, allowing a reliable analysis to support the clinical decision-making process. RESULTS: The results for the sex-related analysis indicate this factor slightly affects the system in the Normal VS COVID-19 and Pneumonia VS COVID-19 approaches, although the identified differences are not relevant enough to worsen considerably the system. Regarding the age-related analysis, this factor was observed to be influencing the system in a more consistent way than the sex factor, as it was present in all considered scenarios. However, this worsening does not represent a major factor, as it is not of great magnitude. CONCLUSIONS: Multiple studies have been conducted in other fields in order to determine if certain patient characteristics such as sex or age influenced these deep learning systems. However, to the best of our knowledge, this study has not been done for COVID-19 despite the urgency and lack of COVID-19 chest x-ray images. The presented results evidenced that the proposed methodology and tested approaches allow a robust and reliable analysis to support the clinical decision-making process in this pandemic scenario.


Asunto(s)
COVID-19 , Aprendizaje Profundo , Neumonía , COVID-19/diagnóstico por imagen , Femenino , Humanos , Masculino , Pandemias , Radiografía , Rayos X
2.
J Digit Imaging ; 35(5): 1271-1282, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-35513586

RESUMEN

Age-related macular degeneration is the leading cause of vision loss in developed countries, and wet-type AMD requires urgent treatment and rapid diagnosis because it causes rapid irreversible vision loss. Currently, AMD diagnosis is mainly carried out using images obtained by optical coherence tomography. This diagnostic process is performed by human clinicians, so human error may occur in some cases. Therefore, fully automatic methodologies are highly desirable adding a layer of robustness to the diagnosis. In this work, a novel computer-aided diagnosis and visualization methodology is proposed for the rapid identification and visualization of wet AMD. We adapted a convolutional neural network for segmentation of a similar domain of medical images to the problem of wet AMD segmentation, taking advantage of transfer learning, which allows us to work with and exploit a reduced number of samples. We generate a 3D intuitive visualization where the existence, position and severity of the fluid were represented in a clear and intuitive way to facilitate the analysis of the clinicians. The 3D visualization is robust and accurate, obtaining satisfactory 0.949 and 0.960 Dice coefficients in the different evaluated OCT cube configurations, allowing to quickly assess the presence and extension of the fluid associated to wet AMD.


Asunto(s)
Degeneración Macular , Humanos , Degeneración Macular/diagnóstico por imagen , Tomografía de Coherencia Óptica/métodos , Redes Neurales de la Computación , Diagnóstico por Computador/métodos
3.
Appl Soft Comput ; 115: 108190, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34899109

RESUMEN

Covid-19 is a new infectious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Given the seriousness of the situation, the World Health Organization declared a global pandemic as the Covid-19 rapidly around the world. Among its applications, chest X-ray images are frequently used for an early diagnostic/screening of Covid-19 disease, given the frequent pulmonary impact in the patients, critical issue to prevent further complications caused by this highly infectious disease. In this work, we propose 4 fully automatic approaches for the classification of chest X-ray images under the analysis of 3 different categories: Covid-19, pneumonia and healthy cases. Given the similarity between the pathological impact in the lungs between Covid-19 and pneumonia, mainly during the initial stages of both lung diseases, we performed an exhaustive study of differentiation considering different pathological scenarios. To address these classification tasks, we evaluated 6 representative state-of-the-art deep network architectures on 3 different public datasets: (I) Chest X-ray dataset of the Radiological Society of North America (RSNA); (II) Covid-19 Image Data Collection; (III) SIRM dataset of the Italian Society of Medical Radiology. To validate the designed approaches, several representative experiments were performed using 6,070 chest X-ray radiographs. In general, satisfactory results were obtained from the designed approaches, reaching a global accuracy values of 0.9706 ± 0.0044, 0.9839 ± 0.0102, 0.9744 ± 0.0104 and 0.9744 ± 0.0104, respectively, thus helping the work of clinicians in the diagnosis and consequently in the early treatment of this relevant pandemic pathology.

4.
Expert Syst Appl ; 173: 114677, 2021 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-33612998

RESUMEN

One of the main challenges in times of sanitary emergency is to quickly develop computer aided diagnosis systems with a limited number of available samples due to the novelty, complexity of the case and the urgency of its implementation. This is the case during the current pandemic of COVID-19. This pathogen primarily infects the respiratory system of the afflicted, resulting in pneumonia and in a severe case of acute respiratory distress syndrome. This results in the formation of different pathological structures in the lungs that can be detected by the use of chest X-rays. Due to the overload of the health services, portable X-ray devices are recommended during the pandemic, preventing the spread of the disease. However, these devices entail different complications (such as capture quality) that, together with the subjectivity of the clinician, make the diagnostic process more difficult and suggest the necessity for computer-aided diagnosis methodologies despite the scarcity of samples available to do so. To solve this problem, we propose a methodology that allows to adapt the knowledge from a well-known domain with a high number of samples to a new domain with a significantly reduced number and greater complexity. We took advantage of a pre-trained segmentation model from brain magnetic resonance imaging of a unrelated pathology and performed two stages of knowledge transfer to obtain a robust system able to segment lung regions from portable X-ray devices despite the scarcity of samples and lesser quality. This way, our methodology obtained a satisfactory accuracy of 0.9761 ± 0.0100 for patients with COVID-19, 0.9801 ± 0.0104 for normal patients and 0.9769 ± 0.0111 for patients with pulmonary diseases with similar characteristics as COVID-19 (such as pneumonia) but not genuine COVID-19.

5.
Sensors (Basel) ; 20(22)2020 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-33238566

RESUMEN

Water safety and quality can be compromised by the proliferation of toxin-producing phytoplankton species, requiring continuous monitoring of water sources. This analysis involves the identification and counting of these species which requires broad experience and knowledge. The automatization of these tasks is highly desirable as it would release the experts from tedious work, eliminate subjective factors, and improve repeatability. Thus, in this preliminary work, we propose to advance towards an automatic methodology for phytoplankton analysis in digital images of water samples acquired using regular microscopes. In particular, we propose a novel and fully automatic method to detect and segment the existent phytoplankton specimens in these images using classical computer vision algorithms. The proposed method is able to correctly detect sparse colonies as single phytoplankton candidates, thanks to a novel fusion algorithm, and is able to differentiate phytoplankton specimens from other image objects in the microscope samples (like minerals, bubbles or detritus) using a machine learning based approach that exploits texture and colour features. Our preliminary experiments demonstrate that the proposed method provides satisfactory and accurate results.


Asunto(s)
Monitoreo del Ambiente/métodos , Procesamiento de Imagen Asistido por Computador , Microscopía , Fitoplancton , Algoritmos , Agua Dulce , Aprendizaje Automático
6.
Sensors (Basel) ; 20(7)2020 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-32260062

RESUMEN

Optical Coherence Tomography (OCT) has become a relevant image modality in the ophthalmological clinical practice, as it offers a detailed representation of the eye fundus. This medical imaging modality is currently one of the main means of identification and characterization of intraretinal cystoid regions, a crucial task in the diagnosis of exudative macular disease or macular edema, among the main causes of blindness in developed countries. This work presents an exhaustive analysis of intensity and texture-based descriptors for its identification and classification, using a complete set of 510 texture features, three state-of-the-art feature selection strategies, and seven representative classifier strategies. The methodology validation and the analysis were performed using an image dataset of 83 OCT scans. From these images, 1609 samples were extracted from both cystoid and non-cystoid regions. The different tested configurations provided satisfactory results, reaching a mean cross-validation test accuracy of 92.69%. The most promising feature categories identified for the issue were the Gabor filters, the Histogram of Oriented Gradients (HOG), the Gray-Level Run-Length matrix (GLRL), and the Laws' texture filters (LAWS), being consistently and considerably selected along all feature selector algorithms in the top positions of different relevance rankings.

7.
J Digit Imaging ; 33(5): 1335-1351, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32562127

RESUMEN

The automatic identification and segmentation of edemas associated with diabetic macular edema (DME) constitutes a crucial ophthalmological issue as they provide useful information for the evaluation of the disease severity. According to clinical knowledge, the DME disorder can be categorized into three main pathological types: serous retinal detachment (SRD), cystoid macular edema (CME), and diffuse retinal thickening (DRT). The implementation of computational systems for their automatic extraction and characterization may help the clinicians in their daily clinical practice, adjusting the diagnosis and therapies and consequently the life quality of the patients. In this context, this paper proposes a fully automatic system for the identification, segmentation and characterization of the three ME types using optical coherence tomography (OCT) images. In the case of SRD and CME edemas, different approaches were implemented adapting graph cuts and active contours for their identification and precise delimitation. In the case of the DRT edemas, given their fuzzy regional appearance that requires a complex extraction process, an exhaustive analysis using a learning strategy was designed, exploiting intensity, texture, and clinical-based information. The different steps of this methodology were validated with a heterogeneous set of 262 OCT images, using the manual labeling provided by an expert clinician. In general terms, the system provided satisfactory results, reaching Dice coefficient scores of 0.8768, 0.7475, and 0.8913 for the segmentation of SRD, CME, and DRT edemas, respectively.


Asunto(s)
Retinopatía Diabética , Edema Macular , Diabetes Mellitus , Retinopatía Diabética/complicaciones , Retinopatía Diabética/diagnóstico por imagen , Humanos , Edema Macular/diagnóstico por imagen , Desprendimiento de Retina , Tomografía de Coherencia Óptica , Agudeza Visual
8.
Sensors (Basel) ; 19(23)2019 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-31795480

RESUMEN

Optical Coherence Tomography (OCT) is a medical image modality providing high-resolution cross-sectional visualizations of the retinal tissues without any invasive procedure, commonly used in the analysis of retinal diseases such as diabetic retinopathy or retinal detachment. Early identification of the epiretinal membrane (ERM) facilitates ERM surgical removal operations. Moreover, presence of the ERM is linked to other retinal pathologies, such as macular edemas, being among the main causes of vision loss. In this work, we propose an automatic method for the characterization and visualization of the ERM's presence using 3D OCT volumes. A set of 452 features is refined using the Spatial Uniform ReliefF (SURF) selection strategy to identify the most relevant ones. Afterwards, a set of representative classifiers is trained, selecting the most proficient model, generating a 2D reconstruction of the ERM's presence. Finally, a post-processing stage using a set of morphological operators is performed to improve the quality of the generated maps. To verify the proposed methodology, we used 20 3D OCT volumes, both with and without the ERM's presence, totalling 2428 OCT images manually labeled by a specialist. The most optimal classifier in the training stage achieved a mean accuracy of 91 . 9 % . Regarding the post-processing stage, mean specificity values of 91 . 9 % and 99 . 0 % were obtained from volumes with and without the ERM's presence, respectively.

9.
Sensors (Basel) ; 19(23)2019 Nov 21.
Artículo en Inglés | MEDLINE | ID: mdl-31766394

RESUMEN

The clinical study of the cornea-contact lens relationship is widely used in the process of adaptation of the scleral contact lens (SCL) to the ocular morphology of patients. In that sense, the measurement of the adjustment between the SCL and the cornea can be used to study the comfort or potential damage that the lens may produce in the eye. The current analysis procedure implies the manual inspection of optical coherence tomography of the anterior segment images (AS-OCT) by the clinical experts. This process presents several limitations such as the inability to obtain complex metrics, the inaccuracies of the manual measurements or the requirement of a time-consuming process by the expert in a tedious process, among others. This work proposes a fully-automatic methodology for the extraction of the areas of interest in the study of the cornea-contact lens relationship and the measurement of representative metrics that allow the clinicians to measure quantitatively the adjustment between the lens and the eye. In particular, three distance metrics are herein proposed: Vertical, normal to the tangent of the region of interest and by the nearest point. Moreover, the images are classified to characterize the analysis as belonging to the central cornea, peripheral cornea, limbus or sclera (regions where the inner layer of the lens has already joined the cornea). Finally, the methodology graphically presents the results of the identified segmentations using an intuitive visualization that facilitates the analysis and diagnosis of the patients by the clinical experts.


Asunto(s)
Córnea/fisiología , Tomografía de Coherencia Óptica/métodos , Automatización/métodos , Lentes de Contacto , Técnicas de Diagnóstico Oftalmológico , Humanos , Esclerótica/fisiología
10.
Sensors (Basel) ; 19(21)2019 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-31683559

RESUMEN

Optical Coherence Tomography Angiography (OCTA) constitutes a new non-invasive ophthalmic image modality that allows the precise visualization of the micro-retinal vascularity that is commonly used to analyze the foveal region. Given that there are many systemic and eye diseases that affect the eye fundus and its vascularity, the analysis of that region is crucial to diagnose and estimate the vision loss. The Visual Acuity (VA) is typically measured manually, implying an exhaustive and time-consuming procedure. In this work, we propose a method that exploits the information of the OCTA images to automatically estimate the VA with an accurate error of 0.1713.


Asunto(s)
Angiografía/métodos , Biomarcadores/análisis , Vasos Sanguíneos/diagnóstico por imagen , Tomografía de Coherencia Óptica/métodos , Agudeza Visual/fisiología , Algoritmos , Automatización , Fóvea Central/diagnóstico por imagen , Humanos , Procesamiento de Imagen Asistido por Computador , Análisis de Componente Principal , Reproducibilidad de los Resultados
11.
J Digit Imaging ; 32(6): 947-962, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31144147

RESUMEN

An accurate identification of the retinal arteries and veins is a relevant issue in the development of automatic computer-aided diagnosis systems that facilitate the analysis of different relevant diseases that affect the vascular system as diabetes or hypertension, among others. The proposed method offers a complete analysis of the retinal vascular tree structure by its identification and posterior classification into arteries and veins using optical coherence tomography (OCT) scans. These scans include the near-infrared reflectance retinography images, the ones we used in this work, in combination with the corresponding histological sections. The method, firstly, segments the vessel tree and identifies its characteristic points. Then, Global Intensity-Based Features (GIBS) are used to measure the differences in the intensity profiles between arteries and veins. A k-means clustering classifier employs these features to evaluate the potential of artery/vein identification of the proposed method. Finally, a post-processing stage is applied to correct misclassifications using context information and maximize the performance of the classification process. The methodology was validated using an OCT image dataset retrieved from 46 different patients, where 2,392 vessel segments and 97,294 vessel points were manually labeled by an expert clinician. The method achieved satisfactory results, reaching a best accuracy of 93.35% in the identification of arteries and veins, being the first proposal that faces this issue in this image modality.


Asunto(s)
Enfermedades de la Retina/diagnóstico por imagen , Vasos Retinianos/diagnóstico por imagen , Tomografía de Coherencia Óptica/métodos , Enfermedades Vasculares/diagnóstico por imagen , Humanos
12.
BMC Med Res Methodol ; 18(1): 144, 2018 11 20.
Artículo en Inglés | MEDLINE | ID: mdl-30458717

RESUMEN

BACKGROUND: The retinal vascular tortuosity can be a potential indicator of relevant vascular and non-vascular diseases. However, the lack of a precise and standard guide for the tortuosity evaluation hinders its use for diagnostic and treatment purposes. This work aims to advance in the standardization of the retinal vascular tortuosity as a clinical biomarker with diagnostic potential, allowing, thereby, the validation of objective computational measurements on the basis of the entire spectrum of the expert knowledge. METHODS: This paper describes a multi-expert validation process of the computational vascular tortuosity measurements of reference. A group of five experts, covering the different clinical profiles of an ophthalmological service, and a four-grade scale from non-tortuous to severe tortuosity as well as non-tortuous / tortuous and asymptomatic / symptomatic binary classifications are considered for the analysis of the the multi-expert validation procedure. The specialists rating process comprises two rounds involving all the experts and a joint round to establish consensual rates. The expert agreement is analyzed throughout the rating procedure and, then, the consensual rates are set as the reference to validate the prognostic performance of four computational tortuosity metrics of reference. RESULTS: The Kappa indexes for the intra-rater agreement analysis were obtained between 0.35 and 0.83 whereas for the inter-rater agreement in the asymptomatic / symptomatic classification were between 0.22 and 0.76. The Area Under the Curve (AUC) for each expert against the consensual rates were placed between 0.61 and 0.83 whereas the prognostic performance of the best objective tortuosity metric was 0.80. CONCLUSIONS: There is a high inter and intra-rater variability, especially for the case of the four grade scale. The prognostic performance of the tortuosity measurements is close to the experts' performance, especially for Grisan measurement. However, there is a gap between the automatic effectiveness and the expert perception given the lack of clinical criteria in the computational measurements.


Asunto(s)
Diagnóstico por Computador/métodos , Oftalmólogos/estadística & datos numéricos , Enfermedades de la Retina/diagnóstico , Vasos Retinianos/patología , Humanos , Variaciones Dependientes del Observador , Oftalmólogos/normas , Oftalmología/métodos , Oftalmología/normas , Oftalmología/estadística & datos numéricos , Pautas de la Práctica en Medicina/normas , Reproducibilidad de los Resultados
13.
Neural Netw ; 170: 254-265, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37995547

RESUMEN

Multi-task learning is a promising paradigm to leverage task interrelations during the training of deep neural networks. A key challenge in the training of multi-task networks is to adequately balance the complementary supervisory signals of multiple tasks. In that regard, although several task-balancing approaches have been proposed, they are usually limited by the use of per-task weighting schemes and do not completely address the uneven contribution of the different tasks to the network training. In contrast to classical approaches, we propose a novel Multi-Adaptive Optimization (MAO) strategy that dynamically adjusts the contribution of each task to the training of each individual parameter in the network. This automatically produces a balanced learning across tasks and across parameters, throughout the whole training and for any number of tasks. To validate our proposal, we perform comparative experiments on real-world datasets for computer vision, considering different experimental settings. These experiments allow us to analyze the performance obtained in several multi-task scenarios along with the learning balance across tasks, network layers and training steps. The results demonstrate that MAO outperforms previous task-balancing alternatives. Additionally, the performed analyses provide insights that allow us to comprehend the advantages of this novel approach for multi-task learning.


Asunto(s)
Aprendizaje Automático , Redes Neurales de la Computación , Monoaminooxidasa
14.
Heliyon ; 10(3): e25367, 2024 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-38327447

RESUMEN

Water quality can be negatively affected by the presence of some toxic phytoplankton species, whose toxins are difficult to remove by conventional purification systems. This creates the need for periodic analyses, which are nowadays manually performed by experts. These labor-intensive processes are affected by subjectivity and expertise, causing unreliability. Some automatic systems have been proposed to address these limitations. However, most of them are based on classical image processing pipelines with not easily scalable designs. In this context, deep learning techniques are more adequate for the detection and recognition of phytoplankton specimens in multi-specimen microscopy images, as they integrate both tasks in a single end-to-end trainable module that is able to automatize the adaption to such a complex domain. In this work, we explore the use of two different object detectors: Faster R-CNN and RetinaNet, from the one-stage and two-stage paradigms respectively. We use a dataset composed of multi-specimen microscopy images captured using a systematic protocol. This allows the use of widely available optical microscopes, also avoiding manual adjustments on a per-specimen basis, which would require expert knowledge. We have made our dataset publicly available to improve the reproducibility and to foment the development of new alternatives in the field. The selected Faster R-CNN methodology reaches maximum recall levels of 95.35%, 84.69%, and 79.81%, and precisions of 94.68%, 89.30% and 82.61%, for W. naegeliana, A. spiroides, and D. sociale, respectively. The system is able to adapt to the dataset problems and improves the results overall with respect to the reference state-of-the-art work. In addition, the proposed system improves the automation and abstraction from the domain and simplifies the workflow and adjustment.

15.
Med Biol Eng Comput ; 62(3): 865-881, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38060101

RESUMEN

Retinal vascular tortuosity is an excessive bending and twisting of the blood vessels in the retina that is associated with numerous health conditions. We propose a novel methodology for the automated assessment of the retinal vascular tortuosity from color fundus images. Our methodology takes into consideration several anatomical factors to weigh the importance of each individual blood vessel. First, we use deep neural networks to produce a robust extraction of the different anatomical structures. Then, the weighting coefficients that are required for the integration of the different anatomical factors are adjusted using evolutionary computation. Finally, the proposed methodology also provides visual representations that explain the contribution of each individual blood vessel to the predicted tortuosity, hence allowing us to understand the decisions of the model. We validate our proposal in a dataset of color fundus images providing a consensus ground truth as well as the annotations of five clinical experts. Our proposal outperforms previous automated methods and offers a performance that is comparable to that of the clinical experts. Therefore, our methodology demonstrates to be a viable alternative for the assessment of the retinal vascular tortuosity. This could facilitate the use of this biomarker in clinical practice and medical research.


Asunto(s)
Inteligencia Artificial , Enfermedades de la Retina , Humanos , Vasos Retinianos/diagnóstico por imagen , Retina , Fondo de Ojo , Algoritmos
16.
Med Biol Eng Comput ; 62(7): 2189-2212, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38499946

RESUMEN

Respiratory diseases have a significant global impact, and assessing these conditions is crucial for improving patient outcomes. Chest X-ray is widely used for diagnosis, but expert evaluation can be challenging. Automatic computer-aided diagnosis methods can provide support for clinicians in these tasks. Deep learning has emerged as a set of algorithms with exceptional potential in such tasks. However, these algorithms require a vast amount of data, often scarce in medical imaging domains. In this work, a new data augmentation methodology based on adapted generative latent diffusion models is proposed to improve the performance of an automatic pathological screening in two high-impact scenarios: tuberculosis and lung nodules. The methodology is evaluated using three publicly available datasets, representative of real-world settings. An ablation study obtained the highest-performing image generation model configuration regarding the number of training steps. The results demonstrate that the novel set of generated images can improve the performance of the screening of these two highly relevant pathologies, obtaining an accuracy of 97.09%, 92.14% in each dataset of tuberculosis screening, respectively, and 82.19% in lung nodules. The proposal notably improves on previous image generation methods for data augmentation, highlighting the importance of the contribution in these critical public health challenges.


Asunto(s)
Algoritmos , Radiografía Torácica , Humanos , Radiografía Torácica/métodos , Aprendizaje Profundo , Pulmón/diagnóstico por imagen , Pulmón/patología , Tuberculosis/diagnóstico por imagen , Tuberculosis/diagnóstico , Tuberculosis Pulmonar/diagnóstico por imagen , Neoplasias Pulmonares/diagnóstico por imagen , Neoplasias Pulmonares/patología , Procesamiento de Imagen Asistido por Computador/métodos , Diagnóstico por Computador/métodos
17.
Med Biol Eng Comput ; 2024 Jul 06.
Artículo en Inglés | MEDLINE | ID: mdl-38969811

RESUMEN

Retinal image registration is of utmost importance due to its wide applications in medical practice. In this context, we propose ConKeD, a novel deep learning approach to learn descriptors for retinal image registration. In contrast to current registration methods, our approach employs a novel multi-positive multi-negative contrastive learning strategy that enables the utilization of additional information from the available training samples. This makes it possible to learn high-quality descriptors from limited training data. To train and evaluate ConKeD, we combine these descriptors with domain-specific keypoints, particularly blood vessel bifurcations and crossovers, that are detected using a deep neural network. Our experimental results demonstrate the benefits of the novel multi-positive multi-negative strategy, as it outperforms the widely used triplet loss technique (single-positive and single-negative) as well as the single-positive multi-negative alternative. Additionally, the combination of ConKeD with the domain-specific keypoints produces comparable results to the state-of-the-art methods for retinal image registration, while offering important advantages such as avoiding pre-processing, utilizing fewer training samples, and requiring fewer detected keypoints, among others. Therefore, ConKeD shows a promising potential towards facilitating the development and application of deep learning-based methods for retinal image registration.

18.
J Imaging Inform Med ; 37(1): 107-122, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38343245

RESUMEN

Central Serous Chorioretinopathy (CSC) is a retinal disorder caused by the accumulation of fluid, resulting in vision distortion. The diagnosis of this disease is typically performed through Optical Coherence Tomography (OCT) imaging, which displays any fluid buildup between the retinal layers. Currently, these fluid regions are manually detected by visual inspection a time-consuming and subjective process that can be prone to errors. A series of six deep learning-based automatic segmentation architectural configurations of different levels of complexity were trained and compared in order to determine the best model intended for the automatic segmentation of CSC-related lesions in OCT images. The best performing models were then evaluated in an external validation study. Furthermore, an intra- and inter-expert analysis was conducted in order to compare the manual segmentation performed by expert ophthalmologists with the automatic segmentation provided by the models. Test results of the best performing configuration achieved a mean Dice of 0.868 ± 0.056 in the internal dataset. In the external validation set, these models achieved a level of agreement with human experts of up to 0.960 in terms of Kappa coefficient, contrasting with a value of 0.951 for agreement between human experts. Overall, the models reached a better agreement with either of the human experts than these experts with each other, suggesting that automatic segmentation models for the detection of CSC-related lesions in OCT imaging can be useful tools for assessing this disease, reducing the workload of manual inspection and leading to a more robust and objective diagnosis method.

19.
Digit Health ; 10: 20552076231225853, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38313365

RESUMEN

Background: The COVID-19 can cause long-term symptoms in the patients after they overcome the disease. Given that this disease mainly damages the respiratory system, these symptoms are often related with breathing problems that can be caused by an affected diaphragm. The diaphragmatic function can be assessed with imaging modalities like computerized tomography or chest X-ray. However, this process must be performed by expert clinicians with manual visual inspection. Moreover, during the pandemic, the clinicians were asked to prioritize the use of portable devices, preventing the risk of cross-contamination. Nevertheless, the captures of these devices are of a lower quality. Objectives: The automatic quantification of the diaphragmatic function can determine the damage of COVID-19 on each patient and assess their evolution during the recovery period, a task that could also be complemented with the lung segmentation. Methods: We propose a novel multi-task fully automatic methodology to simultaneously localize the position of the hemidiaphragms and to segment the lung boundaries with a convolutional architecture using portable chest X-ray images of COVID-19 patients. For that aim, the hemidiaphragms' landmarks are located adapting the paradigm of heatmap regression. Results: The methodology is exhaustively validated with four analyses, achieving an 82.31% ± 2.78% of accuracy when localizing the hemidiaphragms' landmarks and a Dice score of 0.9688 ± 0.0012 in lung segmentation. Conclusions: The results demonstrate that the model is able to perform both tasks simultaneously, being a helpful tool for clinicians despite the lower quality of the portable chest X-ray images.

20.
J Imaging Inform Med ; 2024 Jul 29.
Artículo en Inglés | MEDLINE | ID: mdl-39075249

RESUMEN

Central Serous Chorioretinopathy (CSCR) is a significant cause of vision impairment worldwide, with Photodynamic Therapy (PDT) emerging as a promising treatment strategy. The capability to precisely segment fluid regions in Optical Coherence Tomography (OCT) scans and predict the response to PDT treatment can substantially augment patient outcomes. This paper introduces a novel deep learning (DL) methodology for automated 3D segmentation of fluid regions in OCT scans, followed by a subsequent PDT response analysis for CSCR patients. Our approach utilizes the rich 3D contextual information from OCT scans to train a model that accurately delineates fluid regions. This model not only substantially reduces the time and effort required for segmentation but also offers a standardized technique, fostering further large-scale research studies. Additionally, by incorporating pre- and post-treatment OCT scans, our model is capable of predicting PDT response, hence enabling the formulation of personalized treatment strategies and optimized patient management. To validate our approach, we employed a robust dataset comprising 2,769 OCT scans (124 3D volumes), and the results obtained were significantly satisfactory, outperforming the current state-of-the-art methods. This research signifies an important milestone in the integration of DL advancements with practical clinical applications, propelling us a step closer towards improved management of CSCR. Furthermore, the methodologies and systems developed can be adapted and extrapolated to tackle similar challenges in the diagnosis and treatment of other retinal pathologies, favoring more comprehensive and personalized patient care.

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