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1.

In Support of Universal Admission Testing for SARS-CoV-2 During Significant Community Transmission.

Rhee, Chanu; Klompas, Michael; Pak, Theodore R; Köhler, Julia R.

Clin Infect Dis ; 78(2): 439-444, 2024 02 17.

Artículo en Inglés | MEDLINE | ID: mdl-37463411

2.

Risk of Misleading Conclusions in Observational Studies of Time-to-Antibiotics and Mortality in Suspected Sepsis.

Pak, Theodore R; Young, Jessica; McKenna, Caroline S; Agan, Anna; DelloStritto, Laura; Filbin, Michael R; Dutta, Sayon; Kadri, Sameer S; Septimus, Edward J; Rhee, Chanu; Klompas, Michael.

Clin Infect Dis ; 77(11): 1534-1543, 2023 11 30.

Artículo en Inglés | MEDLINE | ID: mdl-37531612

3.

Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology.

Javaid, Waleed; Ehni, Jordan; Gonzalez-Reiche, Ana S; Carreño, Juan Manuel; Hirsch, Elena; Tan, Jessica; Khan, Zenab; Kriti, Divya; Ly, Thanh; Kranitzky, Bethany; Barnett, Barbara; Cera, Freddy; Prespa, Lenny; Moss, Marie; Albrecht, Randy A; Mustafa, Ala; Herbison, Ilka; Hernandez, Matthew M; Pak, Theodore R; Alshammary, Hala A; Sebra, Robert; Smith, Melissa L; Krammer, Florian; Gitman, Melissa R; Sordillo, Emilia Mia; Simon, Viviana; van Bakel, Harm.

Clin Infect Dis ; 73(11): e4375-e4383, 2021 12 06.

Artículo en Inglés | MEDLINE | ID: mdl-33252647

4.

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak.

Sullivan, Mitchell J; Altman, Deena R; Chacko, Kieran I; Ciferri, Brianne; Webster, Elizabeth; Pak, Theodore R; Deikus, Gintaras; Lewis-Sandari, Martha; Khan, Zenab; Beckford, Colleen; Rendo, Angela; Samaroo, Flora; Sebra, Robert; Karam-Howlin, Ramona; Dingle, Tanis; Hamula, Camille; Bashir, Ali; Schadt, Eric; Patel, Gopi; Wallach, Frances; Kasarskis, Andrew; Gibbs, Kathleen; van Bakel, Harm.

J Clin Microbiol ; 57(12)2019 12.

Artículo en Inglés | MEDLINE | ID: mdl-31578260

5.

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases.

Michlmayr, Daniela; Pak, Theodore R; Rahman, Adeeb H; Amir, El-Ad David; Kim, Eun-Young; Kim-Schulze, Seunghee; Suprun, Maria; Stewart, Michael G; Thomas, Guajira P; Balmaseda, Angel; Wang, Li; Zhu, Jun; Suaréz-Fariñas, Mayte; Wolinsky, Steven M; Kasarskis, Andrew; Harris, Eva.

Mol Syst Biol ; 14(8): e7862, 2018 08 27.

Artículo en Inglés | MEDLINE | ID: mdl-30150281

6.

Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection.

Altman, Deena R; Sullivan, Mitchell J; Chacko, Kieran I; Balasubramanian, Divya; Pak, Theodore R; Sause, William E; Kumar, Krishan; Sebra, Robert; Deikus, Gintaras; Attie, Oliver; Rose, Hannah; Lewis, Martha; Fulmer, Yi; Bashir, Ali; Kasarskis, Andrew; Schadt, Eric E; Richardson, Anthony R; Torres, Victor J; Shopsin, Bo; van Bakel, Harm.

Infect Immun ; 86(10)2018 10.

Artículo en Inglés | MEDLINE | ID: mdl-30061376

7.

Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia.

Chacko, Kieran I; Sullivan, Mitchell J; Beckford, Colleen; Altman, Deena R; Ciferri, Brianne; Pak, Theodore R; Sebra, Robert; Kasarskis, Andrew; Hamula, Camille L; van Bakel, Harm.

Antimicrob Agents Chemother ; 62(4)2018 04.

Artículo en Inglés | MEDLINE | ID: mdl-29339387

8.

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins.

Rozenblatt-Rosen, Orit; Deo, Rahul C; Padi, Megha; Adelmant, Guillaume; Calderwood, Michael A; Rolland, Thomas; Grace, Miranda; Dricot, Amélie; Askenazi, Manor; Tavares, Maria; Pevzner, Samuel J; Abderazzaq, Fieda; Byrdsong, Danielle; Carvunis, Anne-Ruxandra; Chen, Alyce A; Cheng, Jingwei; Correll, Mick; Duarte, Melissa; Fan, Changyu; Feltkamp, Mariet C; Ficarro, Scott B; Franchi, Rachel; Garg, Brijesh K; Gulbahce, Natali; Hao, Tong; Holthaus, Amy M; James, Robert; Korkhin, Anna; Litovchick, Larisa; Mar, Jessica C; Pak, Theodore R; Rabello, Sabrina; Rubio, Renee; Shen, Yun; Singh, Saurav; Spangle, Jennifer M; Tasan, Murat; Wanamaker, Shelly; Webber, James T; Roecklein-Canfield, Jennifer; Johannsen, Eric; Barabási, Albert-László; Beroukhim, Rameen; Kieff, Elliott; Cusick, Michael E; Hill, David E; Münger, Karl; Marto, Jarrod A; Quackenbush, John; Roth, Frederick P.

Nature ; 487(7408): 491-5, 2012 Jul 26.

Artículo en Inglés | MEDLINE | ID: mdl-22810586

9.

How next-generation sequencing and multiscale data analysis will transform infectious disease management.

Pak, Theodore R; Kasarskis, Andrew.

Clin Infect Dis ; 61(11): 1695-702, 2015 Dec 01.

Artículo en Inglés | MEDLINE | ID: mdl-26251049

10.

Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.

Pak, Theodore R; Altman, Deena R; Attie, Oliver; Sebra, Robert; Hamula, Camille L; Lewis, Martha; Deikus, Gintaras; Newman, Leah C; Fang, Gang; Hand, Jonathan; Patel, Gopi; Wallach, Fran; Schadt, Eric E; Huprikar, Shirish; van Bakel, Harm; Kasarskis, Andrew; Bashir, Ali.

Antimicrob Agents Chemother ; 59(11): 7117-20, 2015 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-26324280

11.

ChromoZoom: a flexible, fluid, web-based genome browser.

Pak, Theodore R; Roth, Frederick P.

Bioinformatics ; 29(3): 384-6, 2013 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-23220575

12.

Timing and Spectrum of Antibiotic Treatment for Suspected Sepsis and Septic Shock: Why so Controversial?

Pak, Theodore R; Rhee, Chanu; Klompas, Michael.

Infect Dis Clin North Am ; 36(4): 719-733, 2022 12.

Artículo en Inglés | MEDLINE | ID: mdl-36328632

13.

Reply to Lesho.

Pak, Theodore R; Kasarskis, Andrew.

Clin Infect Dis ; 62(8): 1053, 2016 Apr 15.

Artículo en Inglés | MEDLINE | ID: mdl-26908789

14.

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks.

Berbel Caban, Ana; Pak, Theodore R; Obla, Ajay; Dupper, Amy C; Chacko, Kieran I; Fox, Lindsey; Mills, Alexandra; Ciferri, Brianne; Oussenko, Irina; Beckford, Colleen; Chung, Marilyn; Sebra, Robert; Smith, Melissa; Conolly, Sarah; Patel, Gopi; Kasarskis, Andrew; Sullivan, Mitchell J; Altman, Deena R; van Bakel, Harm.

Genome Med ; 12(1): 96, 2020 11 16.

Artículo en Inglés | MEDLINE | ID: mdl-33198787

15.

Discontinuation of Universal Admission Testing for SARS-CoV-2 and Hospital-Onset COVID-19 Infections in England and Scotland.

Pak, Theodore R; Rhee, Chanu; Wang, Rui; Klompas, Michael.

JAMA Intern Med ; 183(8): 877-880, 2023 08 01.

Artículo en Inglés | MEDLINE | ID: mdl-37273229

16.

Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records.

Pak, Theodore R; Chacko, Kieran I; O'Donnell, Timothy; Huprikar, Shirish S; van Bakel, Harm; Kasarskis, Andrew; Scott, Erick R.

Infect Control Hosp Epidemiol ; 38(12): 1478-1486, 2017 12.

Artículo en Inglés | MEDLINE | ID: mdl-29103378

17.

High-dimensional CyTOF analysis of dengue virus-infected human DCs reveals distinct viral signatures.

Hamlin, Rebecca E; Rahman, Adeeb; Pak, Theodore R; Maringer, Kevin; Mena, Ignacio; Bernal-Rubio, Dabeiba; Potla, Uma; Maestre, Ana M; Fredericks, Anthony C; Amir, El-Ad D; Kasarskis, Andrew; Ramos, Irene; Merad, Miriam; Fernandez-Sesma, Ana.

JCI Insight ; 2(13)2017 Jul 06.

Artículo en Inglés | MEDLINE | ID: mdl-28679950

18.

Tuning molecule-surface interactions with sub-nanometer-thick covalently bound organic monolayers.

Camillone, Nicholas; Pak, Theodore R; Adib, Kaveh; Osgood, Richard M.

J Phys Chem B ; 110(23): 11334-43, 2006 Jun 15.

Artículo en Inglés | MEDLINE | ID: mdl-16771404

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