RESUMEN
Scientists and managers rely on indicator taxa such as coral and macroalgal cover to evaluate the effects of human disturbance on coral reefs, often assuming a universally positive relationship between local human disturbance and macroalgae. Despite evidence that macroalgae respond to local stressors in diverse ways, there have been few efforts to evaluate relationships between specific macroalgae taxa and local human-driven disturbance. Using genus-level monitoring data from 1205 sites in the Indian and Pacific Oceans, we assess whether macroalgae percent cover correlates with local human disturbance while accounting for factors that could obscure or confound relationships. Assessing macroalgae at genus level revealed that no genera were positively correlated with all human disturbance metrics. Instead, we found relationships between the division or genera of algae and specific human disturbances that were not detectable when pooling taxa into a single functional category, which is common to many analyses. The convention to use percent cover of macroalgae as an indication of local human disturbance therefore likely obscures signatures of local anthropogenic threats to reefs. Our limited understanding of relationships between human disturbance, macroalgae taxa, and their responses to human disturbances impedes the ability to diagnose and respond appropriately to these threats.
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Antozoos , Algas Marinas , Animales , Humanos , Arrecifes de Coral , Ecosistema , Algas Marinas/fisiología , Antozoos/fisiología , Océano PacíficoRESUMEN
Phylogenetic analyses may suffer from multiple sources of error leading to conflict between genes and methods of inference. The evolutionary history of the mollusc clade Vetigastropoda makes them susceptible to these conflicts, their higher level phylogeny remaining largely unresolved. Originating over 350 Ma, vetigastropods were the dominant marine snails in the Paleozoic. Multiple extinction events and new radiations have resulted in both very long and very short branches and a large extant diversity of over 4000 species. This is the perfect setting of a hard phylogenetic question in which sources of conflict can be explored. We present 41 new transcriptomes across the diversity of vetigastropods (62 terminals total), and provide the first genomic-scale phylogeny for the group. We find that deep divergences differ from previous studies in which long branch attraction was likely pervasive. Robust results leading to changes in taxonomy include the paraphyly of the order Lepetellida and the family Tegulidae. Tectinae subfam. nov. is designated for the clade comprising Tectus, Cittarium, and Rochia. For two early divergences, topologies disagreed between concatenated analyses using site heterogeneous models versus concatenated partitioned analyses and summary coalescent methods. We investigated rate and composition heterogeneity among genes, as well as missing data by locus and by taxon, none of which had an impact on the inferred topologies. We also found no evidence for ancient introgression throughout the phylogeny. We further tested whether uninformative genes and over-partitioning were responsible for this discordance by evaluating the phylogenetic signal of individual genes using likelihood mapping, and by analyzing the most informative genes with a full multispecies coalescent (MSC) model. We find that most genes are not informative at the two conflicting nodes, but neither this nor gene-wise partitioning are the cause of discordant results. New method implementations that simultaneously integrate amino acid profile mixture models and the MSC might be necessary to resolve these and other recalcitrant nodes in the Tree of Life. [Fissurellidae; Haliotidae; likelihood mapping; multispecies coalescent; phylogenetic signal; phylogenomic conflict; site heterogeneity; Trochoidea.].
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Evolución Biológica , Genoma , Animales , Genómica , Filogenia , Caracoles/genéticaRESUMEN
Terpios hoshinota is an aggressive, space-competing sponge that kills various stony corals. Outbreaks of this species have led to intense damage to coral reefs in many locations. Here, the first large-scale 16S rRNA gene survey across three oceans revealed that bacteria related to the taxa Prochloron, Endozoicomonas, SAR116, Ruegeria, and unclassified Proteobacteria were prevalent in T. hoshinota. A Prochloron-related bacterium was the most dominant and prevalent cyanobacterium in T. hoshinota. The complete genome of this uncultivated cyanobacterium and pigment analysis demonstrated that it has phycobiliproteins and lacks chlorophyll b, which is inconsistent with the definition of Prochloron. Furthermore, the cyanobacterium was phylogenetically distinct from Prochloron, strongly suggesting that it should be a sister taxon to Prochloron. Therefore, we proposed this symbiotic cyanobacterium as a novel species under the new genus Candidatus Paraprochloron terpiosi. Comparative genomic analyses revealed that 'Paraprochloron' and Prochloron exhibit distinct genomic features and DNA replication machinery. We also characterized the metabolic potentials of 'Paraprochloron terpiosi' in carbon and nitrogen cycling and propose a model for interactions between it and T. hoshinota. This study builds a foundation for the study of the T. hoshinota microbiome and paves the way for better understanding of ecosystems involving this coral-killing sponge.
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Antozoos , Cianobacterias , Microbiota , Poríferos , Animales , Antozoos/microbiología , Arrecifes de Coral , Cianobacterias/metabolismo , Poríferos/genética , Prevalencia , ARN Ribosómico 16S/genética , ARN Ribosómico 16S/metabolismo , SimbiosisRESUMEN
Colour patterns in fish are often used as an important medium for communication. Anemonefish, characterized by specific patterns of white bars, inhabit host anemones and defend the area around an anemone as their territory. The host anemone is used not only by the anemonefish, but also by other fish species that use anemones as temporary shelters. Anemonefish may be able to identify potential competitors by their colour patterns. We first examined the colour patterns of fish using host anemones inhabited by Amphiprion ocellaris as shelter and compared them with the patterns of fish using surrounding scleractinian corals. There were no fish with bars sheltering in host anemones, although many fish with bars were found in surrounding corals. Next, two fish models, one with white bars and the other with white stripes on a black background, were presented to an A. ocellaris colony. The duration of aggressive behaviour towards the bar model was significantly longer than that towards the stripe model. We conclude that differences in aggressive behaviour by the anemonefish possibly select the colour patterns of cohabiting fish. This study indicates that colour patterns may influence not only intraspecific interactions but also interspecific interactions in coral reef ecosystems.
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Anemone , Antozoos , Anémonas de Mar , Animales , Color , Arrecifes de Coral , Ecosistema , Peces , SimbiosisRESUMEN
Among family Zoanthidae (Anthozoa: Hexacorallia: Zoantharia), Zoanthus and Isaurus are widespread benthos on coral reefs, but the reproductive biology of both genera is generally unknown. Accordingly, sexual reproduction of two Zoanthidae species in Japan, Zoanthus kuroshio in Okinawa, and Isaurus tuberculatus in Okinawa and Kochi, was investigated by annual sampling. Between 2012 and 2013, polyps of tagged colonies of Z. kuroshio and I. tuberculatus were sampled monthly, and gonads in mesenteries were examined under a stereomicroscope. In Z. kuroshio, sizes of oocytes were estimated and in situ spawning observations were conducted at night at Okinawa sites. Monthly sampling indicated that gametogenesis periods of both species in Okinawa were from May to August, and oogenesis set in earlier than spermatogenesis, and thus both species can be considered protogynous functional hermaphrodites. On the other hand, I. tuberculatus in Kochi had hermaphroditic polyps in July and August. Notably, fertile colonies of Z. kuroshio were not only hermaphrodites but also included exclusively male and female colonies. Overall, four sexual types were identified in Z. kuroshio: male, female, functional protogynous hermaphrodites, and unclassified sterile colonies. In situ gamete release of Z. kuroshio was observed in August 2012 and July to August 2013. First spawning of the year occurred 1 day after the new moon; colonies shed their bundles 3.5-4 h after sunset. We speculate that lunar phase and time after sunset influence spawning timing in Z. kuroshio. Basic knowledge on sexual reproduction of Zoanthidae is critically needed to better understand the basic biology of these benthic cnidarians.
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Antozoos , Animales , Arrecifes de Coral , Femenino , Gametogénesis , Japón , Masculino , ReproducciónRESUMEN
The mutualistic relationships between anemonefish (Amphiprion; Pomacentridae) and host sea anemones are well known, but host anemones are also used as shelter by damselfish (Pomacentridae), wrasses (Labridae) and cardinalfish (Apogonidae). The threespot dascyllus Dascyllus trimaculatus (Pomacentridae) is known to live on or near host anemones in their immature phase. Nonetheless, detailed studies on the use of host anemones by other fish species have not yet been conducted. To understand the factors that influence the use of host anemones by other fish species, this study investigated the fish biota around host anemones in the Ryukyu Archipelago. Other than Amphiprion spp. and D. trimaculatus, 10 additional species of fish (9 species of damselfish and 1 species of cardinalfish) were confirmed to temporarily use host anemones as shelter, and five species of wrasse including Labroides dimidiatus came to clean anemonefish. Logistic regression analyses (independent variable: presence or absence of other species of fish; dependent variables: anemonefish aggressiveness, size of host anemone, number of D. trimaculatus) indicated that the size of host anemones is important for the presence of fish, both in species using the anemone as temporary shelter and in cleaner species. Large host anemones can provide shelter and food resources for other species of coral reef fish as well as for anemonefish.
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Perciformes , Anémonas de Mar , Animales , Arrecifes de Coral , Peces , SimbiosisRESUMEN
Symbioses between invertebrates are common in the ocean although usually the diversity and specificity of their interactions are not well understood. Parazoanthidae (Cnidaria: Anthozoa: Zoantharia) is one of the most diverse zoantharian families in terms of numbers of genera and species. Species in this family are commonly associated with various other invertebrates that they utilize as their substrate. Previous studies have re-organized the taxonomy of Parazoanthidae and revealed a strong specificity between many parazoanthid species and genera and their substrates. However, our understanding of the species diversity of Parazoanthidae is far from complete, as parazoanthids are often overlooked in sampling surveys. In this study, we establish three subgenera under the genus Umimayanthus Montenegro, Sinniger, and Reimer, 2015; the nominotypical Umimayanthus, Paraumimayanthus subgen nov., and Gorgoniazoanthus subgen. nov., based on the finding of a new species, Umimayanthus (Gorgoniazoanthus) kanabou sp. nov., associated with the sea-whip gorgonian Ellisella sp. from approximately 30 m depth in shallow mesophotic coral reef communities in Oura Bay on Okinawajima Island and in Oshima Strait near Amami-Oshima Island, in the Ryukyu Islands, southern Japan. We additionally report on gastropods and crustaceans observed in association with U. kanabou, and these species are thought to potentially prey upon the zoantharians or on gorgonian polyps. Umimayanthus kanabou is phylogenetically closely related to congeneric sponge-associated Umimayanthus spp., further supporting the recent hypothesis that substrate preferences may change during the evolutionary history of zoantharians.
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Antozoos/anatomía & histología , Antozoos/clasificación , Especificidad de la Especie , Animales , Antozoos/genética , Crustáceos , Ecosistema , Gastrópodos , Japón , Filogenia , Análisis de Secuencia de ADNRESUMEN
The order Pennatulacea, commonly known as sea pens, are colony-forming benthos belonging within subclass Octocorallia (Anthozoa, Cnidaria). Sea pens are found worldwide from shallow to deep waters, and they are important components in sandy and muddy environments. Thus far, there has been only one molecular study focusing on the phylogenetic relationships within the order Pennatulacea, which mainly treated deep-sea species, and thus information on shallow water species is still lacking. On a regional scale, the diversity of sea pens in the northwestern Pacific, including Japan and Palau, has not been well investigated. In this research, we aimed to: (1) more accurately resolve the phylogenetic relationships of sea pens with the inclusion of shallow water species, and (2) obtain a better understanding of the diversity of sea pens in Japan and Palau. Specimens were collected by SCUBA and dredging from the Ryukyu Islands in southern Japan, and from mainland Japan and Palau, and identified to at least the genus level by their morphological traits. Construction of phylogenetic trees with concatenated sequences including the mitochondrial mutS-like protein DNA mismatch repair gene mtMutS and the NADH dehydrogenase subunit 2 ND2 region were performed. The p-distances of mtMutS were calculated for estimation of species number following McFadden et al. (2011). Molecular data for 12 families and 20 genera of sea pens were used in this study. This most comprehensive study including shallow water taxa provided us with more knowledge of phylogenetic relationships. The resulting phylogenetic trees showed a topology distinguished by four large clades (clades 1-4). Families Veretillidae and Echinoptilidae are shown as not the earliest-diverging taxa. Virgulariidae and Scleroptilidae are shown as polyphyletic groups, and our results reconfirm that families Pennatulidae, Kophobelemnidae and Umbellulidae are not monophyletic groups. Overall, we collected and examined an estimated 18 species from the Ryukyu Islands, 16 species from mainland Japan, and five species from Palau. Some of these specimens represented new records from Ryukyu Islands and Palau. Previous records of these sea pens did not exist likely due to a lack of diversity research in sandy and muddy areas. These results demonstrate that many sea pens discoveries likely remain in shallow waters of the Pacific.
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Antozoos/clasificación , Organismos Acuáticos/clasificación , Biodiversidad , Filogenia , Animales , Geografía , Japón , Funciones de Verosimilitud , Océano Pacífico , Especificidad de la EspecieRESUMEN
The Family Hydrozoanthidae are macrocnemic zoantharians, however their phylogenetic position is closer to brachycnemic zoantharians than to other macrocnemic zoantharians. Previous studies have indicated the presence of undescribed Hydrozoanthidae species from various locations in the Indo-Pacific Ocean. In this study, two new Hydrozoanthidae species, Aenigmanthus segoi gen. n., sp. n. and Hydrozoanthus sils sp. n., are described from Japanese and Palauan waters based on combined morphological and molecular phylogenetic analyses utilizing multiple genetic markers. Additionally, Hydrozoanthidae consists of species with an obligate epizoic relationship with hydroids (Hydrozoanthus) and of species with facultative epizoic relationships (Aenigmanthus gen. n. and Terrazoanthus). Results of ancestral state reconstruction analyses indicate that Hydrozoanthus gained obligate epizoic relationships in their evolutionary history perhaps due to structural differences of host invertebrates.
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Antozoos/clasificación , Filogenia , Animales , Antozoos/genética , Ecosistema , Funciones de Verosimilitud , Océano Pacífico , Palau , Especificidad de la EspecieRESUMEN
From previous research, it is known that hermit crabs predominantly dwell in vacated gastropod shells. Several epibiotic taxa are known to live on gastropod shells inhabited by hermit crabs, including some species of the zoantharian genus Epizoanthus. Although many previous taxonomic studies have focused on hermit-crab-associated Epizoanthus species, and have resulted in the description of several species, gastropod-associated species have received comparatively much less attention. At least five Epizoanthus species associated with gastropods have been formally described, but some species have not been found or examined since their original description. In Japan, specimens on the gastropod mollusk Guildfordia triumphans have been found and examined in previous studies, but no formal taxonomic conclusions were made. In this study, we formally describe Epizoanthus rinbou sp. n. from southern Japan based on molecular phylogenetic analyses combined with morphological observations. Epizoanthus rinbou sp. n. is located within an Epizoanthus clade consisting of species associated with gastropods, hermit crabs, sea urchins, and barnacles, as well as non-associated Epizoanthus species. The present study highlights the utility of molecular phylogeny for understanding the diversity and relationships of gastropod-associated Epizoanthus species.
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Cnidarios/clasificación , Cnidarios/genética , Gastrópodos/fisiología , Exoesqueleto , Animales , Cnidarios/fisiología , Evolución Molecular , FilogeniaRESUMEN
Tropical and subtropical shallow benthic marine communities are highly diverse and balanced systems that constitute an important natural resource. Knowledge of the genetic diversity, connectivity and reproduction mode of each population is critical to understanding the fate of whole assemblages in times of disturbances. Importantly, the capability of populations to adapt to environmental challenges will be crucial to determining their survival. Here, we report on the population structure of the common reef zoantharian Zoanthus sansibaricus in the northwestern Pacific, by examining populations at three different locations in southern Japan using five highly variable microsatellite markers. Analyses of a population at the species' northern distribution limit combined with analyses of two subtropical populations suggest that habitat characteristics and ocean currents influence the connectivity and genetic diversity of this species. Our findings emphasize the adaptive ability of Z. sansibaricus to different environmental conditions and may help explain the wide distribution and generalist nature of this species.
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Distribución Animal , Antozoos/genética , Antozoos/fisiología , Arrecifes de Coral , Animales , Variación Genética , Japón , Repeticiones de Microsatélite , Filogenia , Especificidad de la EspecieRESUMEN
Millepora (Cnidaria: Hydrozoa: Milleporidae) spp. are distributed throughout shallow subtropical and tropical marine environments in the Indo-Pacific and Caribbean-Atlantic, and have traditionally been identified using pore characteristics and colony form. Until now, representatives of Millepora spp. on the island of Okinawa-jima, Japan, have been divided into five species; three branching species (Millepora intricata, M. tenera, M. dichotoma), one species with plate-like morphology (M. platyphylla), and one encrusting species (M. exaesa). There have been only a few reports from the Indo-Pacific that have studied the genetic diversity within Millepora spp., although phylogenetic analyses in the Caribbean-Atlantic have proven useful in delimiting closely-related species, while demonstrating that morphologically-based identification systems may have problems. In the present study, we sought to clarify taxonomic confusion of Millepora spp. in the Pacific by using sequence data of the ribosomal internal transcribed spacer (ITS-rDNA) of specimens from Okinawa, Japan and other localities (Johnston Atoll, Great Barrier Reef). Four separate clades were recovered from the ITS-rDNA analyses. Although we examined specimens of all three branching Millepora spp. previously reported from Okinawa-jima Island, in our phylogenetic analyses they were concentrated within a single clade, with only three specimens in other clades. Encrusting Millepora specimens were found within all clades, although it should be noted all species initially start as encrusting forms, and plate-like specimens were found within three clades. Our data also point to the existence of a previously unknown lineage within Millepora characterized by its ability to overgrow live scleractinian corals.
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Biodiversidad , Evolución Molecular , Hidrozoos/genética , Filogenia , Animales , ADN Espaciador Ribosómico/análisis , Hidrozoos/clasificación , Japón , Análisis de Secuencia de ADNRESUMEN
In the summer of 2016, extensive coral bleaching occurred on the coral reefs of Okinawa, Japan, which was often lethal in shallow waters. In November 2016, after the coral bleaching event, an anomalous black band disease (ABBD) was noticed during regular monitoring of the Pachyseris-dominated upper mesophotic Ryugu Reef in Okinawa. We subsequently conducted 10 × 1 m belt transects in deeper (30-35 m depth, n = 5) and shallower areas (27-29 m, n = 7) of the reef and obtained data on coral percentage coverage, Pachyseris percentage coverage, occurrence (numbers of lesions) of ABBD, and ABBD percentage coverage on Pachyseris. Both depths showed high live coral coverage (>90%), indicating little mortality from the summer 2016 bleaching event, and Pachyseris percentage coverage was significantly higher in the deeper area (mean ± SD = 48.6 ± 45.0%) compared to the shallower area (5.1 ± 5.0%). Additionally, although numbers of ABBD occurrences (= lesions) were significantly higher in the deeper area (81.0 ± 52.8 as opposed to 8.3 ± 6.7 at shallower depths), total ABBD percentage coverage on Pachyseris was not significantly different between shallow and deep areas (7.0 ± 3.2% versus 4.7 ± 3.6%). ABBD was observed to be Pachyseris-specific at Ryugu Reef. These results indicate that similar to shallower reefs, mesophotic reefs can experience increased disease occurrences subsequent to non-lethal coral bleaching events.
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Antozoos , Animales , Color , Arrecifes de Coral , Ecosistema , Japón , Estaciones del AñoRESUMEN
Currently the genera Parazoanthus (family Parazoanthidae) and Epizoanthus (family Epizoanthidae) are the only sponge-associated zoantharians (Cnidaria, Anthozoa). The Parazoanthidae-sponge associations are widely distributed in tropical and subtropical waters from the intertidal to the deep sea in the Atlantic and Indo-Pacific Oceans. However, the taxonomic identification of both parties is often confused due to variable morphology and wide ecological ranges. In particular, Parazoanthidae species diversity remains poorly understood in the Indo-Pacific. In the present study, the diversity of the sponge-zoanthid association in the Indo-Pacific was investigated with 71 Parazoanthidae specimens collected from 29 different locations in Japan (n=22), Australia (n=6) and Florida, USA (n=1). For all specimens morphological analyses were performed and total DNA was extracted and amplified for four DNA markers (COI-mtDNA, mt 16S-rDNA, ITS-rDNA and ALG11-nuDNA). The combined data demonstrate that the specimens of this study are clearly different from those of all described Parazoanthus species, and lead us to erect Umimayanthus gen. n., within family Parazoanthidae, containing the three newly described species U. chanpuru sp. n., U. miyabi sp. n., U. nakama sp. n. The new genus also includes the previously described species U. parasiticus (Duchassaing and Michelotti, 1860; comb. nov.), previously belonging to the genus Parazoanthus. Neighbor joining, maximum likelihood and Bayesian posterior probability phylogenetic trees clearly demonstrate the monophyly of Umimayanthus gen. n. to the exclusion of all outgroup sequences. The phylogenetic results were also compared to morphological features, and polyp sizes, amount of sand content in tissues, types of connections between polyps, and cnidae data, in particular holotrichs-1, were useful in distinguishing the different species within this new genus. This new genus can be distinguished from all other Zoantharia by a unique and conserved 9 bp insertion and a 14 bp deletion in the mt 16S-rDNA region. Additionally, compared to Parazoanthus sensu stricto (i.e. P. axinellae [Schmidt, 1862]), Umimayanthus spp. are only found associated to sponges, and have a coenenchyme much less developed than Parazoanthus sensu stricto. Each new species can be distinguished from other congeners by a unique DNA sequence, numbers of tentacle, maximum sizes of holotrichs, associated sponge morphology, and colony morphology. The identification of the host sponge species is the next logical step in this research as this may also aid in the distinction of Umimayanthus species.
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Antozoos/clasificación , Antozoos/genética , Biodiversidad , Poríferos/clasificación , Poríferos/genética , Animales , Antozoos/fisiología , Australia , Secuencia de Bases , Teorema de Bayes , ADN Mitocondrial/genética , ADN Ribosómico/genética , Florida , Genes de ARNr/genética , Océano Índico , Japón , Océano Pacífico , Filogenia , Poríferos/fisiologíaRESUMEN
The primary problem hindering the study of octocorals is the disordered situation regarding their taxonomy, chiefly caused by insufficient knowledge of valid morphological taxonomic characters. Briareum is an octocoral genus found in the Atlantic and Pacific in shallow tropical and subtropical waters, and occurs in both encrusting and branching colony forms. Their simple morphology and morphological plasticity have hindered taxonomic understanding of this genus. In this study three morphologically distinct types (= type-1, -2, and -3) of Briareum from the Ryukyu Archipelago and their genetic diversity were examined. Colony, anthostele morphology, and sclerite length were examined for each type. Four molecular markers (mitochondrial cytochrome c oxidase subunit 1, mitochondrial mismatch repair gene, nuclear 18S ribosomal DNA, internal transcribed spacer 2 (ITS2)) were used to evaluate molecular phylogenetic status of these variations. Although one morphological type ("deep" small colonies, = type-3) showed small differences in nuclear ITS2 sequences compared to the other two types, the remaining types had identical sequences for all molecular markers examined. The results suggest extremely low genetic diversity despite highly variable morphology of Briareum species in Okinawa. Nevertheless, considering the distribution patterns and discontinuous morphology of type-3 compared to the other two morphotypes, genetic isolation of type-3 is plausible. In Briareum, small variances in nuclear ITS2 sequences of type-3 may have much more importance than in molecular phylogenies of other octocorals. Further phylogenetic investigations and comparison with Briareum specimens from other regions are necessary to conclusively taxonomically identify the three types.
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Antozoos/anatomía & histología , Antozoos/genética , Variación Genética , Distribución Animal , Animales , JapónRESUMEN
BACKGROUND: Marine benthic prokaryotic communities play crucial roles in material recycling within coastal environments, including coral reefs. Coastal sedimentary microbiomes are particularly important as potential reservoirs of symbiotic, beneficial, and pathogenic bacteria in coral reef environments, and therefore presumably play a core role in local ecosystem functioning. However, there is a lack of studies comparing different environments with multiple sites on the island scale, particularly studies focusing on prokaryotic communities, as previous investigations have focused mainly on a single site or on specific environmental conditions. In our study, we collected coastal sediments from seven sites around Okinawa Island, Japan, including three different benthic types; sandy bottoms, seagrass meadows, and hard substratum with living scleractinian corals. We then used metabarcoding to identify prokaryotic compositions and estimate enzymes encoded by genes to infer their functions. RESULTS: The results showed that the three substrata had significantly different prokaryotic compositions. Seagrass meadow sites exhibited significantly higher prokaryotic alpha-diversity compared to sandy bottom sites. ANCOM analysis revealed that multiple bacterial orders were differentially abundant within each substratum. At coral reef sites, putative disease- and thermal stress-related opportunistic bacteria such as Rhodobacterales, Verrucomicrobiales, and Cytophagales were comparatively abundant, while seagrass meadow sites abundantly harbored Desulfobacterales, Steroidobacterales and Chromatiales, which are common bacterial orders in seagrass meadows. According to our gene-coded enzyme analyses the numbers of differentially abundant enzymes were highest in coral reef sites. Notably, superoxide dismutase, an important enzyme for anti-oxidative stress in coral tissue, was abundant at coral sites. Our results provide a list of prokaryotes to look into in each substrate, and further emphasize the importance of considering the microbiome, especially when focusing on environmental conservation. CONCLUSION: Our findings prove that prokaryotic metabarcoding is capable of capturing compositional differences and the diversity of microbial communities in three different environments. Furthermore, several taxa were suggested to be differentially more abundant in specific environments, and gene-coded enzymic compositions also showed possible differences in ecological functions. Further study, in combination with field observations and temporal sampling, is key to achieving a better understanding of the interactions between the local microbiome and the surrounding benthic community.
RESUMEN
This study evaluated the distribution and abundance of marine litter on 30 beaches around Okinawa Island, Japan. Beach quality indices and multivariate statistical analyses were used to assess the quality of the beaches and their pollution patterns. A total of 11,626 items weighing 513.49 kg with an average density of 0.13 ± 0.10 items/m2 were collected. Litter was dominated by plastics (81.72 %), broken glass (8.38 %), and cigarette butts (7.44 %), and 74.05 % of total litter was from land-based sources. Single-use plastics (SUPs) were present in all surveyed beaches and made up 30.54 % of the total litter. The clean coast index (CCI), plastic abundance index (PAI), and hazardous index (HI) were between 0.1 and 7.6, 0.1-4.0 and 0.01-1.42, respectively, indicating low to moderate levels of pollution of Okinawan beaches. This study should aid in the formation of strategies to deal with marine litter in Okinawa, other areas of Japan and the Asia-Pacific region.
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Monitoreo del Ambiente , Residuos , Japón , Residuos/análisis , Playas , Plásticos/análisisRESUMEN
The symbiosis between giant sea anemones, algae of the family Symbiodiniaceae, and anemonefish is an iconic example of a mutualistic trio1,2. Molecular analyses have shown that giant sea anemones hosting anemonefish belong to three clades: Entacmaea, Stichodactyla, and Heteractis3,4,5 (Figure 1A). Associations among 28 species of anemonefish and 10 species of giant sea anemone hosts are complex. Some fish species are highly specialized to only one anemone species (e.g., Amphiprion frenatus with Entacmaea quadricolor), whereas others are more generalist (e.g., Amphiprion clarkii)1,2,6. Reasons for host preferences are obscured, among other things, by the lack of resolution in the giant sea anemone phylogeny. Here, we generated a transcriptomic dataset from 55 sea anemones collected from southern Japan to reconstruct these phylogenetic relationships. We observed that the bubble-tip sea anemone E. quadricolor, currently considered a single species, can be separated into at least four cryptic lineages (A-D). Surprisingly, these lineages can be precisely distinguished by observing their association with anemonefish: A. frenatus only associates with lineage D, whereas A. clarkii lives in the other three lineages.
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Perciformes , Anémonas de Mar , Humanos , Animales , Filogenia , Peces , SimbiosisRESUMEN
We present the complete genome sequence of Dorometra sesokonis. Genome sequencing was performed on genetic material from a single wild-collected individual. The sequence reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.