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1.
Microvasc Res ; 147: 104494, 2023 05.
Artículo en Inglés | MEDLINE | ID: mdl-36731768

RESUMEN

AIMS: Animal models are essential to investigate cardiovascular pathophysiology and pharmacology, but phylogenetic diversity makes it necessary to identify the model with vasculature most similar to that of humans. METHODS AND RESULTS: In this study, we compared the mesenteric arteries of humans, pigs, rabbits and rats in terms of the i) evolutionary changes in the amino acid sequences of α1 and ß2 adrenoceptors; M1, M2, and M3 muscarinic receptors; and bradykinin (BKR) and thromboxane-prostanoid (TP) receptors, through bioinformatics tools; ii) expression of α1, ß2, M1, M3 and TP receptors in each tunica, as assessed by immunofluorescence; and iii) reactivity to receptor-dependent and independent contractile agonists and relaxants, by performing organ bath assays. Phylogenetically, pigs showed the highest degree of evolutionary closeness to humans for all receptors, and with the exception of BKR, rabbits presented the greatest evolutionary difference compared to humans, pigs and rats. The expression of the measured receptors in the three vascular tunica in pigs was most similar to that in humans. Using a one-way ANOVA to determine the differences in vascular reactivity, we found that the reactivity of pigs was the most similar to that of humans in terms of sensitivity (pD2) and maximum effect of vascular reactivity (Emax) to KCl, phenylephrine, isoproterenol and carbachol. CONCLUSIONS: The pig is a better vascular model than the rabbit or rat to extrapolate results to human mesenteric arteries. Comparative vascular studies have implications for understanding the evolutionary history of different species. TRANSLATIONAL PERSPECTIVE: The presented findings are useful for identifying an animal model with a vasculature that is similar to that of humans. This information is important to extrapolate, with greater precision, the findings in arterial pathophysiology or pharmacology from animal models to the healthy or diseased human being.


Asunto(s)
Arterias Mesentéricas , Contracción Muscular , Humanos , Ratas , Conejos , Animales , Porcinos , Filogenia , Fenilefrina/farmacología , Receptores Muscarínicos/metabolismo , Prostaglandinas/metabolismo
2.
Mol Cell Proteomics ; 20: 100159, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34619366

RESUMEN

Viruses hijack host metabolic pathways for their replicative advantage. In this study, using patient-derived multiomics data and in vitro infection assays, we aimed to understand the role of key metabolic pathways that can regulate severe acute respiratory syndrome coronavirus-2 reproduction and their association with disease severity. We used multiomics platforms (targeted and untargeted proteomics and untargeted metabolomics) on patient samples and cell-line models along with immune phenotyping of metabolite transporters in patient blood cells to understand viral-induced metabolic modulations. We also modulated key metabolic pathways that were identified using multiomics data to regulate the viral reproduction in vitro. Coronavirus disease 2019 disease severity was characterized by increased plasma glucose and mannose levels. Immune phenotyping identified altered expression patterns of carbohydrate transporter, glucose transporter 1, in CD8+ T cells, intermediate and nonclassical monocytes, and amino acid transporter, xCT, in classical, intermediate, and nonclassical monocytes. In in vitro lung epithelial cell (Calu-3) infection model, we found that glycolysis and glutaminolysis are essential for virus replication, and blocking these metabolic pathways caused significant reduction in virus production. Taken together, we therefore hypothesized that severe acute respiratory syndrome coronavirus-2 utilizes and rewires pathways governing central carbon metabolism leading to the efflux of toxic metabolites and associated with disease severity. Thus, the host metabolic perturbation could be an attractive strategy to limit the viral replication and disease severity.


Asunto(s)
Proteínas Sanguíneas/metabolismo , COVID-19/etiología , SARS-CoV-2/fisiología , Adulto , Anciano , Sistema de Transporte de Aminoácidos y+/sangre , Aminoácidos/sangre , Biomarcadores/sangre , Proteínas Sanguíneas/análisis , COVID-19/metabolismo , COVID-19/virología , Carbohidratos/sangre , Estudios de Casos y Controles , Transportador de Glucosa de Tipo 1/sangre , Hospitalización , Humanos , Inmunofenotipificación , Manosa/sangre , Lectina de Unión a Manosa/sangre , Persona de Mediana Edad , Índice de Severidad de la Enfermedad , Replicación Viral
3.
Anal Chem ; 94(26): 9261-9269, 2022 07 05.
Artículo en Inglés | MEDLINE | ID: mdl-35731985

RESUMEN

Chemical proteomics studies the effects of drugs upon a cellular proteome. Due to the complexity and diversity of tumors, the response of cancer cells to drugs is also heterogeneous, and thus, proteome analysis at the single-cell level is needed. Here, we demonstrate that single-cell proteomics techniques have become quantitative enough to tackle the drug effects on target proteins, enabling single-cell chemical proteomics (SCCP). Using SCCP, we studied here the time-resolved response of individual adenocarcinoma A549 cells to anticancer drugs methotrexate, camptothecin, and tomudex, revealing the early emergence of cellular subpopulations committed and uncommitted to death. As a novel and useful approach to exploring the heterogeneous response to drugs of cancer cells, SCCP may prove to be a breakthrough application for single-cell proteomics.


Asunto(s)
Antineoplásicos , Neoplasias , Células A549 , Antineoplásicos/farmacología , Camptotecina/farmacología , Humanos , Proteoma/metabolismo , Proteómica
4.
J Proteome Res ; 19(11): 4259-4274, 2020 11 06.
Artículo en Inglés | MEDLINE | ID: mdl-33095583

RESUMEN

Emerging and re-emerging infectious diseases due to RNA viruses cause major negative consequences for the quality of life, public health, and overall economic development. Most of the RNA viruses causing illnesses in humans are of zoonotic origin. Zoonotic viruses can directly be transferred from animals to humans through adaptation, followed by human-to-human transmission, such as in human immunodeficiency virus (HIV), severe acute respiratory syndrome coronavirus (SARS-CoV), Middle East respiratory syndrome coronavirus (MERS-CoV), and, more recently, SARS coronavirus 2 (SARS-CoV-2), or they can be transferred through insects or vectors, as in the case of Crimean-Congo hemorrhagic fever virus (CCHFV), Zika virus (ZIKV), and dengue virus (DENV). At the present, there are no vaccines or antiviral compounds against most of these viruses. Because proteins possess a vast array of functions in all known biological systems, proteomics-based strategies can provide important insights into the investigation of disease pathogenesis and the identification of promising antiviral drug targets during an epidemic or pandemic. Mass spectrometry technology has provided the capacity required for the precise identification and the sensitive and high-throughput analysis of proteins on a large scale and has contributed greatly to unravelling key protein-protein interactions, discovering signaling networks, and understanding disease mechanisms. In this Review, we present an account of quantitative proteomics and its application in some prominent recent examples of emerging and re-emerging RNA virus diseases like HIV-1, CCHFV, ZIKV, and DENV, with more detail with respect to coronaviruses (MERS-CoV and SARS-CoV) as well as the recent SARS-CoV-2 pandemic.


Asunto(s)
Enfermedades Transmisibles Emergentes , Proteómica , Infecciones por Virus ARN , Animales , COVID-19 , Prueba de COVID-19 , Técnicas de Laboratorio Clínico , Enfermedades Transmisibles Emergentes/diagnóstico , Enfermedades Transmisibles Emergentes/terapia , Enfermedades Transmisibles Emergentes/virología , Infecciones por Coronavirus/diagnóstico , Humanos , Pandemias , Neumonía Viral , Infecciones por Virus ARN/diagnóstico , Infecciones por Virus ARN/terapia , Infecciones por Virus ARN/virología , Virus ARN
5.
J Proteome Res ; 18(1): 548-556, 2019 01 04.
Artículo en Inglés | MEDLINE | ID: mdl-30462917

RESUMEN

Large cohorts of carefully collected clinical tissue materials play a central role in acquiring sufficient depth and statistical power to discover disease-related mechanisms and biomarkers of clinical significance. Manual preparation of such large sample cohorts requires experienced laboratory personnel. This carries other possible downsides such as low throughput, high risk of errors, and low reproducibility. In this work, three automated technologies for high-throughput proteomics of frozen sectioned tissues were compared. The instruments evaluated included the Bioruptor for tissue disruption and protein extraction; the Barocycler, which is able to disrupt tissues and digest the proteins; and the AssayMAP Bravo, a microchromatography platform for protein digestion, peptide desalting, and fractionation. Wide varieties of tissue samples from rat spleen, malignant melanoma, and pancreatic tumors were used for the assessment. The three instruments displayed reproducible and consistent results, as was proven by high correlations and low coefficients of variation between technical replicates and even more importantly, between replicates that were processed in different batches or at different time points. The results from this study allowed us to integrate these technologies into an automated sample preparation workflow for large-scale proteomic studies that are currently ongoing. Data are available via ProteomeXchange with identifiers PXD010296 and PXD011295.


Asunto(s)
Bancos de Muestras Biológicas , Proteómica/métodos , Manejo de Especímenes/métodos , Animales , Automatización , Humanos , Melanoma/química , Neoplasias Pancreáticas/química , Proteínas/análisis , Proteolisis , Ratas , Manejo de Especímenes/normas , Bazo/química , Suecia
6.
Bioinformatics ; 33(12): 1883-1885, 2017 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-28186229

RESUMEN

MOTIVATION: Around 75% of all mass spectra remain unidentified by widely adopted proteomic strategies. We present DiagnoProt, an integrated computational environment that can efficiently cluster millions of spectra and use machine learning to shortlist high-quality unidentified mass spectra that are discriminative of different biological conditions. RESULTS: We exemplify the use of DiagnoProt by shortlisting 4366 high-quality unidentified tandem mass spectra that are discriminative of different types of the Aspergillus fungus. AVAILABILITY AND IMPLEMENTATION: DiagnoProt, a demonstration video and a user tutorial are available at http://patternlabforproteomics.org/diagnoprot . CONTACT: andrerfsilva@gmail.com or paulo@pcarvalho.com. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.


Asunto(s)
Aprendizaje Automático , Proteómica/métodos , Análisis de Secuencia de Proteína/métodos , Programas Informáticos , Espectrometría de Masas en Tándem/métodos , Aspergillus/metabolismo , Proteínas Fúngicas/análisis
7.
Int J Antimicrob Agents ; 61(5): 106792, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-36931610

RESUMEN

BACKGROUND: Enhanced levels of a dipeptide, WG-am, have been reported among elite controllers - patients who spontaneously control their HIV-1 infection. This study aimed to evaluate anti-HIV-1 activity and mechanism of action of WG-am. METHODS: Drug sensitivity assays in TZM.bl cells, PBMCs and ACH-2 cells using WT and mutated HIV-1 strainswere performed to evaluate the antiviral mechanism of WG-am. Mass spectrometry-based proteomics and Real-time PCR analysis of reverse transcription steps were performed to unravel the second anti-HIV-1 mechanism of WG-am. RESULTS: The data suggest that WG-am binds to the CD4 binding pocket of HIV-1 gp120 and blocks its binding to the host cell receptors. Additionally, the time course assay showed that WG-am also inhibited HIV-1 at 4-6 hours post-infection, suggesting a second antiviral mechanism. Drug sensitivity assays under acidic wash conditions confirmed the ability of WG-am to internalise into the host cell in an HIV independent manner. Proteomic studies showed a clustering of all samples treated with WG-am independent of the number of doses or presence or absence of HIV-1. Differentially expressed proteins due to the WG-am treatment indicated an effect on HIV-1 reverse transcription, which was confirmed by reverse transcriptase polymerase chain reaction (RT-PCR). CONCLUSION: Naturally occurring in HIV-1 elite controllers, WG-am stands out as a new kind of antiviral compound with two independent inhibitory mechanisms of action on HIV-1 replication. WG-am halts HIV-1 entry to the host cell by binding to HIV-1 gp120, thereby blocking the binding of HIV-1 to the host cell. WG-am also exerts a post-entry but pre-integration antiviral effect related to RT-activity.


Asunto(s)
Infecciones por VIH , VIH-1 , Humanos , Dipéptidos , Proteómica , Infecciones por VIH/tratamiento farmacológico , Antivirales , Controladores de Élite , Replicación Viral
8.
Antonie Van Leeuwenhoek ; 102(1): 193-201, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-22453520

RESUMEN

Mycobacterial metabolic activity is typically measured using time-consuming manual methods based on nutrient consumption, nucleic acid synthesis or reduction of tetrazolium salts. In this study, we propose much simpler electrochemical methods for continuous monitoring of the metabolic activity of mycobacteria in culture. Chronoamperometry and chronopotentiometry were used to detect metabolic activity of both slow-growing and fast-growing mycobacteria using a potentiostat with 2D-electrochemical cell. Electrochemical measurements were able to detect statistically significant differences in the metabolic activity of approximately 10(7) mycobacteria in different growth conditions, within less than 24 h of mycobacterial culture. The metabolic activity of mycobacteria measured by the used electrochemical methods correlated well with changes in general respiratory conditions within the cells as it was evaluated by different biochemical tests. Chronoamperometry and chronopotentiometry allowed measurement of mycobacterial metabolic activity without invasive chemical reactions, at minimal bacterial load and when metabolic response of mycobacteria occurs quickly. The proposed methodology is simple, rapid and cost-effective, and it is expected that both in vitro and in vivo metabolic activity of human mycobacterial pathogens as Mycobacterium tuberculosis can be measured when the implementation of this method to analyze virulent strains is adapted.


Asunto(s)
Técnicas Bacteriológicas/métodos , Técnicas Electroquímicas/métodos , Mycobacterium tuberculosis/crecimiento & desarrollo , Mycobacterium tuberculosis/metabolismo , Técnicas Bacteriológicas/economía , Técnicas Electroquímicas/economía , Humanos , Factores de Tiempo
9.
Methods Mol Biol ; 2386: 113-127, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-34766268

RESUMEN

Single cell proteomics is an emerging field of bioanalysis allowing one to capture proteome profiles of isolated single cells, which is expected to yield additional biological information in comparison with bulk cell analysis. Mass spectrometry-based methods provide unbiased analysis of detectable proteins limited only by technical parameters, such as sensitivity, which necessitates the development of best-practice workflows. Here, we describe the entire experimental design of single cell proteome analysis, exemplified by cultured A549 lung adenocarcinoma cells treated with an anti-cancer drug (methotrexate) and utilizing tandem mass tag (TMTpro™) labeling strategy for mass spectrometric data acquisition.


Asunto(s)
Proteoma , Proteómica , Análisis de la Célula Individual , Espectrometría de Masas en Tándem , Flujo de Trabajo
10.
Commun Biol ; 5(1): 357, 2022 04 13.
Artículo en Inglés | MEDLINE | ID: mdl-35418589

RESUMEN

HIV-1 infection induces a chronic inflammatory environment not restored by suppressive antiretroviral therapy (ART). As of today, the effect of viral suppression and immune reconstitution in people living with HIV-1 (PLWH) has been well described but not completely understood. Herein, we show how PLWH who naturally control the virus (PLWHEC) have a reduced proportion of CD4+CCR6+ and CD8+CCR6+ cells compared to PLWH on suppressive ART (PLWHART) and HIV-1 negative controls (HC). Expression of CCR2 was reduced on both CD4+, CD8+ and classical monocytes in PLWHEC compared to PLWHART and HC. Longer suppressive therapy, measured in the same patients, decreased number of cells expressing CCR2 on all monocytic cell populations while expression on CD8+ T cells increased. Furthermore, the CD4+CCR6+/CCR6- cells exhibited a unique proteomic profile with a modulated energy metabolism in PLWHEC compared to PLWHART independent of CCR6 status. The CD4+CCR6+ cells also showed an enrichment in proteins involved in apoptosis and p53 signalling in PLWHEC compared to PLWHART, indicative of increased sensitivity towards cell death mechanisms. Collectively, this data shows how PLWHEC have a unique chemokine receptor profile that may aid in facilitating natural control of HIV-1 infection.


Asunto(s)
Infecciones por VIH , VIH-1 , Linfocitos T CD4-Positivos , Linfocitos T CD8-positivos , Controladores de Élite , Infecciones por VIH/tratamiento farmacológico , Humanos , Proteómica , Receptores CCR6/metabolismo
11.
Elife ; 112022 04 19.
Artículo en Inglés | MEDLINE | ID: mdl-35437144

RESUMEN

The pathogenesis and host-viral interactions of the Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) are convoluted and not well evaluated. Application of the multi-omics system biology approaches, including biological network analysis in elucidating the complex host-viral response, interrogates the viral pathogenesis. The present study aimed to fingerprint the system-level alterations during acute CCHFV-infection and the cellular immune responses during productive CCHFV-replication in vitro. We used system-wide network-based system biology analysis of peripheral blood mononuclear cells (PBMCs) from a longitudinal cohort of CCHF patients during the acute phase of infection and after one year of recovery (convalescent phase) followed by untargeted quantitative proteomics analysis of the most permissive CCHFV-infected Huh7 and SW13 cells. In the RNAseq analysis of the PBMCs, comparing the acute and convalescent-phase, we observed system-level host's metabolic reprogramming towards central carbon and energy metabolism (CCEM) with distinct upregulation of oxidative phosphorylation (OXPHOS) during CCHFV-infection. Upon application of network-based system biology methods, negative coordination of the biological signaling systems like FOXO/Notch axis and Akt/mTOR/HIF-1 signaling with metabolic pathways during CCHFV-infection were observed. The temporal quantitative proteomics in Huh7 showed a dynamic change in the CCEM over time and concordant with the cross-sectional proteomics in SW13 cells. By blocking the two key CCEM pathways, glycolysis and glutaminolysis, viral replication was inhibited in vitro. Activation of key interferon stimulating genes during infection suggested the role of type I and II interferon-mediated antiviral mechanisms both at the system level and during progressive replication.


Crimean-Congo hemorrhagic fever (CCHF) is an emerging disease that is increasingly spreading to new populations. The condition is now endemic in almost 30 countries in sub-Saharan Africa, South-Eastern Europe, the Middle East and Central Asia. CCHF is caused by a tick-borne virus and can cause uncontrolled bleeding. It has a mortality rate of up to 40%, and there are currently no vaccines or effective treatments available. All viruses depend entirely on their hosts for reproduction, and they achieve this through hijacking the molecular machinery of the cells they infect. However, little is known about how the CCHF virus does this and how the cells respond. To understand more about the relationship between the cell's metabolism and viral replication, Neogi, Elaldi et al. studied immune cells taken from patients during an infection and one year later. The gene activity of the cells showed that the virus prefers to hijack processes known as central carbon and energy metabolism. These are the main regulator of the cellular energy supply and the production of essential chemicals. By using cancer drugs to block these key pathways, Neogi, Elaldi et al. could reduce the viral reproduction in laboratory cells. These findings provide a clearer understanding of how the CCHF virus replicates inside human cells. By interfering with these processes, researchers could develop new antiviral strategies to treat the disease. One of the cancer drugs tested in cells, 2-DG, has been approved for emergency use against COVID-19 in some countries. Neogi, Elaldi et al. are now studying this further in animals with the hope of reaching clinical trials in the future.


Asunto(s)
Virus de la Fiebre Hemorrágica de Crimea-Congo , Fiebre Hemorrágica de Crimea , Antivirales/uso terapéutico , Estudios Transversales , Virus de la Fiebre Hemorrágica de Crimea-Congo/genética , Humanos , Interferones , Leucocitos Mononucleares
12.
iScience ; 24(5): 102420, 2021 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-33898942

RESUMEN

The commonly used laboratory cell lines are the first line of experimental models to study the pathogenicity and performing antiviral assays for emerging viruses. Here, we assessed the tropism and cytopathogenicity of the first Swedish isolate of SARS-CoV-2 in six different human cell lines, compared their growth characteristics, and performed quantitative proteomics for the susceptible cell lines. Overall, Calu-3, Caco2, Huh7, and 293FT cell lines showed a high-to-moderate level of susceptibility to SARS-CoV-2. In Caco2 cells, the virus can achieve high titers in the absence of any prominent cytopathic effect. The protein abundance profile during SARS-CoV-2 infection revealed cell-type-specific regulation of cellular pathways. Type-I interferon signaling was identified as the common dysregulated cellular response in Caco2, Calu-3, and Huh7 cells. Together, our data show cell-type specific variability for cytopathogenicity, susceptibility, and cellular response to SARS-CoV-2 and provide important clues to guide future studies.

13.
Cell Death Discov ; 7(1): 114, 2021 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-34006825

RESUMEN

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that causes Coronavirus disease 2019 (COVID-19) has caused a global health emergency. A key feature of COVID-19 is dysregulated interferon-response. Type-I interferon (IFN-I) is one of the earliest antiviral innate immune responses following viral infection and plays a significant role in the pathogenesis of SARS-CoV-2. In this study, using a proteomics-based approach, we identified that SARS-CoV-2 infection induces delayed and dysregulated IFN-I signaling in Huh7 cells. We demonstrate that SARS-CoV-2 is able to inhibit RIG-I mediated IFN-ß production. Our results also confirm the recent findings that IFN-I pretreatment is able to reduce the susceptibility of Huh7 cells to SARS-CoV-2, but not post-treatment. Moreover, senescent Huh7 cells, in spite of showing accentuated IFN-I response were more susceptible to SARS-CoV-2 infection, and the virus effectively inhibited IFIT1 in these cells. Finally, proteomic comparison between SARS-CoV-2, SARS-CoV, and MERS-CoV revealed a distinct differential regulatory signature of interferon-related proteins emphasizing that therapeutic strategies based on observations in SARS-CoV and MERS-CoV should be used with caution. Our findings provide a better understanding of SARS-CoV-2 regulation of cellular interferon response and a perspective on its use as a treatment. Investigation of different interferon-stimulated genes and their role in the inhibition of SARS-CoV-2 pathogenesis may direct novel antiviral strategies.

14.
Front Immunol ; 12: 750665, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34712240

RESUMEN

Alzheimer's disease (AD) is a neurodegenerative disorder and the most common cause of dementia worldwide. In AD, neurodegeneration spreads throughout different areas of the central nervous system (CNS) in a gradual and predictable pattern, causing progressive memory decline and cognitive impairment. Deposition of neurofibrillary tangles (NFTs) in specific CNS regions correlates with the severity of AD and constitutes the basis for disease classification into different Braak stages (I-VI). Early clinical symptoms are typically associated with stages III-IV (i.e., limbic stages) when the involvement of the hippocampus begins. Histopathological changes in AD have been linked to brain proteome alterations, including aberrant posttranslational modifications (PTMs) such as the hyperphosphorylation of Tau. Most proteomic studies to date have focused on AD progression across different stages of the disease, by targeting one specific brain area at a time. However, in AD vulnerable regions, stage-specific proteomic alterations, including changes in PTM status occur in parallel and remain poorly characterized. Here, we conducted proteomic, phosphoproteomic, and acetylomic analyses of human postmortem tissue samples from AD (Braak stage III-IV, n=11) and control brains (n=12), covering all anatomical areas affected during the limbic stage of the disease (total hippocampus, CA1, entorhinal and perirhinal cortices). Overall, ~6000 proteins, ~9000 unique phosphopeptides and 221 acetylated peptides were accurately quantified across all tissues. Our results reveal significant proteome changes in AD brains compared to controls. Among others, we have observed the dysregulation of pathways related to the adaptive and innate immune responses, including several altered antimicrobial peptides (AMPs). Notably, some of these changes were restricted to specific anatomical areas, while others altered according to disease progression across the regions studied. Our data highlights the molecular heterogeneity of AD and the relevance of neuroinflammation as a major player in AD pathology. Data are available via ProteomeXchange with identifier PXD027173.


Asunto(s)
Enfermedad de Alzheimer/metabolismo , Encéfalo/metabolismo , Proteoma/metabolismo , Acetilación , Anciano , Anciano de 80 o más Años , Péptidos Antimicrobianos/metabolismo , Progresión de la Enfermedad , Encefalitis/metabolismo , Femenino , Humanos , Masculino , Persona de Mediana Edad , Péptidos/metabolismo , Fosforilación , Proteómica
15.
Cancers (Basel) ; 13(24)2021 Dec 10.
Artículo en Inglés | MEDLINE | ID: mdl-34944842

RESUMEN

Plasma analysis by mass spectrometry-based proteomics remains a challenge due to its large dynamic range of 10 orders in magnitude. We created a methodology for protein identification known as Wise MS Transfer (WiMT). Melanoma plasma samples from biobank archives were directly analyzed using simple sample preparation. WiMT is based on MS1 features between several MS runs together with custom protein databases for ID generation. This entails a multi-level dynamic protein database with different immunodepletion strategies by applying single-shot proteomics. The highest number of melanoma plasma proteins from undepleted and unfractionated plasma was reported, mapping >1200 proteins from >10,000 protein sequences with confirmed significance scoring. Of these, more than 660 proteins were annotated by WiMT from the resulting ~5800 protein sequences. We could verify 4000 proteins by MS1t analysis from HeLA extracts. The WiMT platform provided an output in which 12 previously well-known candidate markers were identified. We also identified low-abundant proteins with functions related to (i) cell signaling, (ii) immune system regulators, and (iii) proteins regulating folding, sorting, and degradation, as well as (iv) vesicular transport proteins. WiMT holds the potential for use in large-scale screening studies with simple sample preparation, and can lead to the discovery of novel proteins with key melanoma disease functions.

16.
PLoS One ; 8(3): e58378, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23472191

RESUMEN

The Influence of trehalose-based glycolipids in the virulence of Mycobacterium tuberculosis (Mtb) is recognised; however, the actual role of these cell-wall glycolipids in latent infection is unknown. As an initial approach, we determined by two-dimensional thin-layer chromatography the sulfolipid (SL) and diacyltrehalose/polyacyltrehalose (DAT/PAT) profile of the cell wall of hypoxic Mtb. Then, qRT-PCR was extensively conducted to determine the transcription profile of genes involved in the biosynthesis of these glycolipids in non-replicating persistent 1 (NRP1) and anaerobiosis (NRP2) models of hypoxia (Wayne model), and murine models of chronic and progressive pulmonary tuberculosis. A diminished content of SL and increased amounts of glycolipids with chromatographic profile similar to DAT were detected in Mtb grown in the NRP2 stage. A striking decrease in the transcription of mmpL8 and mmpL10 transporter genes and increased transcription of the pks (polyketidesynthase) genes involved in SL and DAT biosynthesis were detected in both the NRP2 stage and the murine model of chronic infection. All genes were found to be up-regulated in the progressive disease. These results suggest that SL production is diminished during latent infection and the DAT/PAT precursors can be accumulated inside tubercle bacilli and are possibly used in reactivation processes.


Asunto(s)
Regulación Bacteriana de la Expresión Génica , Lípidos/biosíntesis , Mycobacterium tuberculosis/genética , Trehalosa/biosíntesis , Tuberculosis Pulmonar/microbiología , Animales , Pared Celular/metabolismo , Cromatografía en Capa Delgada , Modelos Animales de Enfermedad , Progresión de la Enfermedad , Regulación de la Expresión Génica , Masculino , Proteínas de la Membrana/genética , Ratones , Ratones Endogámicos BALB C , Mycobacterium tuberculosis/metabolismo , Oxígeno/metabolismo , Sintasas Poliquetidas/genética , ARN Ribosómico 16S/metabolismo
18.
San Salvador; s.n; 2016. 43 p. graf.
Tesis en Español | BISSAL, LILACS | ID: biblio-1247764

RESUMEN

Los trastornos hipertensivos del embarazo constituyen una de las principales causas de morbi-mortalidad materna y fetal en la población mundial, con mayor repercusión en los países en desarrollo. Las estadísticas indican que los trastornos hipertensivos del embarazo son una de las principales causa de muerte, después de las hemorragias y las infecciones, y determinan una proporción elevada de complicaciones maternas-fetales y neonatales, presentando un gran reto a los profesionales de la salud. Este estudio se realizó con la finalidad de conocer las complicaciones tempranas y tardías presentadas en la enfermedad renal en pacientes que desarrollaron un trastorno hipertensivo en el embarazo, que consultaron durante la atención del parto y puerperio en los años 2013 y 2014, en el Hospital Nacional de la Mujer; y de esta manera determinar la frecuencia de cada una de estas complicaciones y enmarcar el perfil de las pacientes que presentan estas complicaciones, reflejando datos importantes en cuanto a los resultados perinatales obtenidos


Asunto(s)
Enfermedades Renales/complicaciones , Hipertensión Inducida en el Embarazo , Ginecología , Obstetricia
19.
Rev. colomb. radiol ; 23(2): 3465-3470, jun. 2012.
Artículo en Español | LILACS | ID: lil-656548

RESUMEN

Introducción: Entre el 5 y 30 de los pacientes con trauma de tórax desarrollan hemotórax retenido, que requiere una intervención para evacuarlo y prevenir el desarrollo de empiema, fibrotorax y/o atrapamiento pulmonar. El método diagnóstico recomendado es la tomografía con medio de contraste. El ultrasonido ha sido utilizado ampliamente para evaluar la cavidad pleural. El propósito de este estudio fue evaluar el desempeño diagnóstico de la ecografía en pacientes con sospecha de hemotórax retenido traumático, en comparación con la tomografía con medio de contraste. Materiales y métodos: Estudio prospectivo de evaluación de dos pruebas diagnósticas en el Hospital Universitario San Vicente de Paúl (Medellín, Colombia). Un total de 68 pacientes con sospecha de hemotórax retenido postraumático se evaluaron con ultrasonido de tórax y tomografía multicorte torácica. El resultado de las ecografías y tomografías multicortes de tórax se comparó con los hallazgos quirúrgicos de los pacientes intervenidos o con el seguimiento clínico. Resultados: Se incluyeron en el estudio 68 pacientes. Se confirmó hemotórax retenido en 47 pacientes (69,1) y se descartó en 21 (30,9). La ecografía pleural tuvo una sensibilidad de 72,3, especificidad de 95,24, VPP de 97,14, VPN de 60,61, cociente de probabilidades positivo 15,19 y cociente de probabilidades negativo 0,29. La tomografía de tórax tuvo una sensibilidad de 70,21, especificidad de 52,38, VPP 76,74, VPN de 44, cociente de probabilidades positivo 1,47 y cociente de probabilidades negativo 0,57 en el diagnóstico de hemotórax retenido. Conclusión: La ecografía torácica tuvo un mejor desempeño diagnóstico que la tomografía con medio de contraste en pacientes con sospecha de hemotórax retenido.


Asunto(s)
Hemotórax , Traumatismos Torácicos , Tomografía Computarizada por Rayos X , Ultrasonografía
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