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1.
Lett Appl Microbiol ; 53(1): 73-8, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21535044

RESUMEN

AIM: Testing the ability of the alternative ethanol production yeast Dekkera bruxellensis to produce ethanol from lignocellulose hydrolysate and comparing it to Saccharomyces cerevisiae. METHODS AND RESULTS: Industrial isolates of D. bruxellensis and S. cerevisiae were cultivated in small-scale batch fermentations of enzymatically hydrolysed steam exploded aspen sawdust. Different dilutions of hydrolysate were tested. None of the yeasts grew in undiluted or 1:2 diluted hydrolysate [final glucose concentration always adjusted to 40 g l⁻¹ (0.22 mol l⁻¹)]. This was most likely due to the presence of inhibitors such as acetate or furfural. In 1:5 hydrolysate, S. cerevisiae grew, but not D. bruxellensis, and in 1:10 hydrolysate, both yeasts grew. An external vitamin source (e.g. yeast extract) was essential for growth of D. bruxellensis in this lignocellulosic hydrolysate and strongly stimulated S. cerevisiae growth and ethanol production. Ethanol yields of 0.42 ± 0.01 g ethanol (g glucose)⁻¹ were observed for both yeasts in 1:10 hydrolysate. In small-scale continuous cultures with cell recirculation, with a gradual increase in the hydrolysate concentration, D. bruxellensis was able to grow in 1:5 hydrolysate. In bioreactor experiments with cell recirculation, hydrolysate contents were increased up to 1:2 hydrolysate, without significant losses in ethanol yields for both yeasts and only slight differences in viable cell counts, indicating an ability of both yeasts to adapt to toxic compounds in the hydrolysate. CONCLUSIONS: Dekkera bruxellensis and S. cerevisiae have a similar potential to ferment lignocellulose hydrolysate to ethanol and to adapt to fermentation inhibitors in the hydrolysate. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first study investigating the potential of D. bruxellensis to ferment lignocellulosic hydrolysate. Its high competitiveness in industrial fermentations makes D. bruxellensis an interesting alternative for ethanol production from those substrates.


Asunto(s)
Biocombustibles , Dekkera/metabolismo , Etanol , Microbiología Industrial , Lignina/metabolismo , Saccharomyces cerevisiae/metabolismo , Reactores Biológicos , Fermentación , Hidrólisis , Saccharomyces cerevisiae/crecimiento & desarrollo
2.
J Neurol Neurosurg Psychiatry ; 80(10): 1176-9, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19465414

RESUMEN

BACKGROUND: Primary focal dystonia (PFD) is characterised by motor symptoms. Frequent co-occurrence of abnormal mental conditions has been mentioned for decades but is less well defined. In this study, prevalence rates of psychiatric disorders, personality disorders and traits in a large cohort of patients with PFD were evaluated. METHODS: Prevalence rates of clinical psychiatric diagnoses in 86 PFD patients were compared with a population based sample (n = 3943) using a multiple regression approach. Furthermore, participants were evaluated for personality traits with the 5 Factor Personality Inventory. RESULTS: Lifetime prevalence for any psychiatric or personality disorder was 70.9%. More specifically, axis I disorders occurred at a 4.5-fold increased chance. Highest odds ratios were found for social phobia (OR 21.6), agoraphobia (OR 16.7) and panic disorder (OR 11.5). Furthermore, an increased prevalence rate of 32.6% for anxious personality disorders comprising obsessive-compulsive (22.1%) and avoidant personality disorders (16.3%) were found. Except for social phobia, psychiatric disorders manifested prior to the occurrence of dystonia symptoms. In the self-rating of personality traits, PFD patients demonstrated pronounced agreeableness, conscientiousness and reduced openness. CONCLUSIONS: Patients with PFD show distinct neuropsychiatric and personality profiles of the anxiety spectrum. PFD should therefore be viewed as a neuropsychiatric disorder rather than a pure movement disorder.


Asunto(s)
Síntomas Afectivos/epidemiología , Trastornos Distónicos/psicología , Trastornos Mentales/epidemiología , Personalidad , Adulto , Edad de Inicio , Anciano , Estudios de Casos y Controles , Estudios de Cohortes , Femenino , Humanos , Masculino , Persona de Mediana Edad , Pruebas Neuropsicológicas , Prevalencia , Factores de Riesgo
3.
Science ; 265(5171): 524-8, 1994 Jul 22.
Artículo en Inglés | MEDLINE | ID: mdl-8036495

RESUMEN

Cellulose is the major polysaccharide of plants where it plays a predominantly structural role. A variety of highly specialized microorganisms have evolved to produce enzymes that either synergistically or in complexes can carry out the complete hydrolysis of cellulose. The structure of the major cellobiohydrolase, CBHI, of the potent cellulolytic fungus Trichoderma reesei has been determined and refined to 1.8 angstrom resolution. The molecule contains a 40 angstrom long active site tunnel that may account for many of the previously poorly understood macroscopic properties of the enzyme and its interaction with solid cellulose. The active site residues were identified by solving the structure of the enzyme complexed with an oligosaccharide, o-iodobenzyl-1-thio-beta-cellobioside. The three-dimensional structure is very similar to a family of bacterial beta-glucanases with the main-chain topology of the plant legume lectins.


Asunto(s)
Glicósido Hidrolasas/química , Trichoderma/enzimología , Sitios de Unión , Catálisis , Celobiosa/análogos & derivados , Celobiosa/química , Celobiosa/metabolismo , Celulosa/metabolismo , Celulosa 1,4-beta-Celobiosidasa , Gráficos por Computador , Cristalografía por Rayos X , Glicósido Hidrolasas/metabolismo , Enlace de Hidrógeno , Yodobencenos/química , Yodobencenos/metabolismo , Modelos Moleculares , Estructura Secundaria de Proteína
4.
Structure ; 7(9): 1035-45, 1999 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-10508787

RESUMEN

BACKGROUND: Cel6A is one of the two cellobiohydrolases produced by Trichoderma reesei. The catalytic core has a structure that is a variation of the classic TIM barrel. The active site is located inside a tunnel, the roof of which is formed mainly by a pair of loops. RESULTS: We describe three new ligand complexes. One is the structure of the wild-type enzyme in complex with a nonhydrolysable cello-oligosaccharide, methyl 4-S-beta-cellobiosyl-4-thio-beta-cellobioside (Glc)(2)-S-(Glc)(2), which differs from a cellotetraose in the nature of the central glycosidic linkage where a sulphur atom replaces an oxygen atom. The second structure is a mutant, Y169F, in complex with the same ligand, and the third is the wild-type enzyme in complex with m-iodobenzyl beta-D-glucopyranosyl-beta(1,4)-D-xylopyranoside (IBXG). CONCLUSIONS: The (Glc)(2)-S-(Glc)(2) ligand binds in the -2 to +2 sites in both the wild-type and mutant enzymes. The glucosyl unit in the -1 site is distorted from the usual chair conformation in both structures. The IBXG ligand binds in the -2 to +1 sites, with the xylosyl unit in the -1 site where it adopts the energetically favourable chair conformation. The -1 site glucosyl of the (Glc)(2)-S-(Glc)(2) ligand is unable to take on this conformation because of steric clashes with the protein. The crystallographic results show that one of the tunnel-forming loops in Cel6A is sensitive to modifications at the active site, and is able to take on a number of different conformations. One of the conformational changes disrupts a set of interactions at the active site that we propose is an integral part of the reaction mechanism.


Asunto(s)
Celulasa/química , Celulasa/metabolismo , Trichoderma/enzimología , Sitios de Unión , Catálisis , Celulasa/genética , Celulosa 1,4-beta-Celobiosidasa , Cristalografía por Rayos X , Glucósidos/química , Glucósidos/metabolismo , Ligandos , Mutación , Conformación Proteica , Relación Estructura-Actividad
5.
Biochim Biophys Acta ; 1157(1): 107-13, 1993 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-8499476

RESUMEN

Adsorption to and formation of insoluble reducing end groups on cellulose was studied for intact enzymes and catalytic domains, 'cores', of the four major cellulases from Trichoderma reesei, CBH I, CBH II, EG I and EG III. Individual enzymes were incubated with NaBH4-reduced, phosphoric acid swollen Avicel (regenerated cellulose) or with filter paper. Adsorption onto regenerated cellulose was rapid (equilibration reached within 2 min), but was slow onto filter paper (not completed after 24 h). On both substrates, less was bound of the core domains than of the intact enzymes. After reaching a maximum in adsorption, all the core domains except CBH I core were released again. In general, the desorption of the core enzymes was much faster than the rate of substrate conversion. All enzymes produced new reducing end groups on both substrates, and thus none of them is a true exo-cellulase. However, both the rate of formation and the amount was considerably higher for the EG enzymes than for the CBH's, which may justify the classification of cellulases into two groups, although the difference is quantitative rather than qualitative. EG III was the most endo-active of the enzymes, and CBH I the least.


Asunto(s)
Celulasa/metabolismo , Celulosa/metabolismo , Trichoderma/enzimología , Adsorción , Cinética , Oxidación-Reducción
6.
J Mol Biol ; 275(2): 309-25, 1998 Jan 16.
Artículo en Inglés | MEDLINE | ID: mdl-9466911

RESUMEN

Detailed information has been obtained, by means of protein X-ray crystallography, on how a cellulose chain is bound in the cellulose-binding tunnel of cellobiohydrolase I (CBHI), the major cellulase in the hydrolysis of native, crystalline cellulose by the fungus Trichoderma reesei. Three high-resolution crystal structures of different catalytically deficient mutants of CBHI in complex with cellotetraose, cellopentaose and cellohexaose have been refined at 1.9, 1.7 and 1.9 A resolution, respectively. The observed binding of cellooligomers in the tunnel allowed unambiguous identification of ten well-defined subsites for glucosyl units that span a length of approximately 50 A. All bound oligomers have the same directionality and orientation, and the positions of the glucosyl units in each binding site agree remarkably well between the different complexes. The binding mode observed here corresponds to that expected during productive binding of a cellulose chain. The structures support the hypothesis that hydrolysis by CBHI proceeds from the reducing towards the non-reducing end of a cellulose chain, and they provide a structural explanation for the observed distribution of initial hydrolysis products.


Asunto(s)
Celulasa/química , Celulosa/química , Conformación Proteica , Trichoderma/enzimología , Sustitución de Aminoácidos , Sitios de Unión , Conformación de Carbohidratos , Celulasa/metabolismo , Celulosa/metabolismo , Celulosa 1,4-beta-Celobiosidasa , Simulación por Computador , Cristalografía por Rayos X , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo
7.
J Mol Biol ; 305(1): 79-93, 2001 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-11114249

RESUMEN

Cellobiohydrolase Cel7A (previously called CBH 1), the major cellulase produced by the mould fungus Trichoderma reesei, has been successfully exploited as a chiral selector for separation of stereo-isomers of some important pharmaceutical compounds, e.g. adrenergic beta-blockers. Previous investigations, including experiments with catalytically deficient mutants of Cel7A, point unanimously to the active site as being responsible for discrimination of enantiomers. In this work the structural basis for enantioselectivity of basic drugs by Cel7A has been studied by X-ray crystallography. The catalytic domain of Cel7A was co-crystallised with the (S)-enantiomer of a common beta-blocker, propranolol, at pH 7, and the structure of the complex was determined and refined at 1. 9 A resolution. Indeed, (S)-propranolol binds at the active site, in glucosyl-binding subsites -1/+1. The catalytic residues Glu212 and Glu217 make tight salt links with the secondary amino group of (S)-propranolol. The oxygen atom attached to the chiral centre of (S)-propranolol forms hydrogen bonds to the nucleophile Glu212 O(epsilon1) and to Gln175 N(epsilon2), whereas the aromatic naphthyl moiety stacks with the indole ring of Trp376 in site +1. The bidentate charge interaction with the catalytic glutamate residues is apparently crucial, since no enantioselectivity has been obtained with the catalytically deficient mutants E212Q and E217Q. Activity inhibition experiments with wild-type Cel7A were performed in conditions close to those used for crystallisation. Competitive inhibition constants for (R)- and (S)-propranolol were determined at 220 microM and 44 microM, respectively, corresponding to binding free energies of 20 kJ/mol and 24 kJ/mol, respectively. The K(i) value for (R)-propranolol was 57-fold lower than the highest concentration, 12.5 mM, used in co-crystallisation experiments. Still several attempts to obtain a complex with the (R)-enantiomer have failed. By using cellobiose as a selective competing ligand, the retention of the enantiomers of propranolol on the chiral stationary phase (CSP) based on Cel7A mutant D214N were resolved into enantioselective and non- selective binding. The enantioselective binding was weaker for both enantiomers on D214N-CSP than on wild-type-CSP.


Asunto(s)
Antagonistas Adrenérgicos beta/metabolismo , Celulasa/química , Celulasa/metabolismo , Propranolol/química , Propranolol/metabolismo , Trichoderma/enzimología , Antagonistas Adrenérgicos beta/química , Sitios de Unión , Catálisis , Dominio Catalítico , Celulasa/genética , Celulosa 1,4-beta-Celobiosidasa , Cromatografía Líquida de Alta Presión , Cristalografía por Rayos X , Diseño de Fármacos , Concentración de Iones de Hidrógeno , Modelos Moleculares , Mutación/genética , Unión Proteica , Estructura Terciaria de Proteína , Estereoisomerismo , Especificidad por Sustrato
8.
J Mol Biol ; 264(2): 337-49, 1996 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-8951380

RESUMEN

The roles of the residues in the catalytic trio Glu212-Asp214-Glu217 in cellobiohydrolase I (CBHI) from Trichoderma reesei have been investigated by changing these residues to their isosteric amide counterparts. Three mutants, E212Q, D214N and E217Q, were constructed and expressed in T. reesei. All three point mutations significantly impair the catalytic activity of the enzyme, although all retain some residual activity. On the small chromophoric substrate CNP-Lac, the kcat values were reduced to 1/2000, 1/85 and 1/370 of the wild-type activity, respectively, whereas the KM values remained essentially unchanged. On insoluble crystalline cellulose, BMCC, no significant activity was detected for the E212Q and E217Q mutants, whereas the D214N mutant retained residual activity. The consequences of the individual mutations on the active-site structure were assessed for two of the mutants, E212Q and D214N, by X-ray crystallography at 2.0 A and 2.2 A resolution, respectively. In addition, the structure of E212Q CBHI in complex with the natural product, cellobiose, was determined at 2.0 A resolution. The active-site structure of each mutant is very similar to that of the wild-type enzyme. In the absence of ligand, the active site of the D214N mutant contains a calcium ion firmly bound to Glu212, whereas that of E212Q does not. This supports our hypothesis that Glu212 is the charged species during catalysis. As in the complex of wild-type CBHI with bound o-iodobenzyl-1-thio-beta-D-glucoside, cellobiose is bound to the two product sites in the complex with E212Q. However, the binding of cellobiose differs from that of the glucoside in that the cellobiose is shifted away from the trio of catalytic residues to interact more intimately with a loop that is part of the outer wall of the active site.


Asunto(s)
Celulasa/química , Proteínas Fúngicas/química , Trichoderma/enzimología , Sitios de Unión , Catálisis , Celulasa/genética , Celulasa/metabolismo , Celulosa/metabolismo , Celulosa 1,4-beta-Celobiosidasa , Cristalografía por Rayos X , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Modelos Moleculares , Mutación Puntual , Relación Estructura-Actividad , Trichoderma/genética
9.
J Mol Biol ; 272(3): 383-97, 1997 Sep 26.
Artículo en Inglés | MEDLINE | ID: mdl-9325098

RESUMEN

Cellulose is the most abundant polymer in the biosphere. Although generally resistant to degradation, it may be hydrolysed by cellulolytic organisms that have evolved a variety of structurally distinct enzymes, cellobiohydrolases and endoglucanases, for this purpose. Endoglucanase I (EG I) is the major endoglucanase produced by the cellulolytic fungus Trichoderma reesei, accounting for 5 to 10% of the total amount of cellulases produced by this organism. Together with EG I from Humicola insolens and T. reesei cellobiohydrolase I (CBH I), the enzyme is classified into family 7 of the glycosyl hydrolases, and it catalyses hydrolysis with a net retention of the anomeric configuration. The structure of the catalytic core domain (residues 1 to 371) of EG I from T. reesei has been determined at 3.6 A resolution by the molecular replacement method using the structures of T. reesei CBH I and H. insolens EG I as search models. By employing the 2-fold non-crystallographic symmetry (NCS), the structure was refined successfully, despite the limited resolution. The final model has an R-factor of 0.201 (Rfree 0.258). The structure of EG I reveals an extended, open substrate-binding cleft, rather than a tunnel as found in the homologous cellobiohydrolase CBH I. This confirms the earlier proposal that the tunnel-forming loops in CBH I have been deleted in EG I, which has resulted in an open active site in EG I, enabling it to function as an endoglucanase. Comparison of the structure of EG I with several related enzymes reveals structural similarities, and differences that relate to their biological function in degrading particular substrates. A possible structural explanation of the drastically different pH profiles of T. reesei and H. insolens EG I is proposed.


Asunto(s)
Celulasa/química , Fragmentos de Péptidos/química , Trichoderma/enzimología , Secuencia de Aminoácidos , Bacillus/enzimología , Sitios de Unión , Celobiosa/metabolismo , Celulosa/metabolismo , Celulosa 1,4-beta-Celobiosidasa , Simulación por Computador , Secuencia Conservada , Cristalografía por Rayos X , Hongos Mitospóricos/enzimología , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Ingeniería de Proteínas , Eliminación de Secuencia , Homología de Secuencia de Aminoácido , Especificidad de la Especie
10.
J Mol Biol ; 314(5): 1097-111, 2001 Dec 14.
Artículo en Inglés | MEDLINE | ID: mdl-11743726

RESUMEN

Cellobiohydrolase 58 (Cel7D) is the major cellulase produced by the white-rot fungus Phanerochaete chrysosporium, constituting approximately 10 % of the total secreted protein in liquid culture on cellulose. The enzyme is classified into family 7 of the glycosyl hydrolases, together with cellobiohydrolase I (Cel7A) and endoglucanase I (Cel7B) from Trichoderma reesei. Like those enzymes, it catalyses cellulose hydrolysis with net retention of the anomeric carbon configuration. The structure of the catalytic module (431 residues) of Cel7D was determined at 3.0 A resolution using the structure of Cel7A from T. reesei as a search model in molecular replacement, and ultimately refined at 1.32 A resolution. The core structure is a beta-sandwich composed of two large and mainly antiparallel beta-sheets packed onto each other. A long cellulose-binding groove is formed by loops on one face of the sandwich. The catalytic residues are conserved and the mechanism is expected to be the same as for other family members. The Phanerochaete Cel7D binding site is more open than that of the T. reesei cellobiohydrolase, as a result of deletions and other changes in the loop regions, which may explain observed differences in catalytic properties. The binding site is not, however, as open as the groove of the corresponding endoglucanase. A tyrosine residue at the entrance of the tunnel may be part of an additional subsite not present in the T. reesei cellobiohydrolase. The Cel7D structure was used to model the products of the five other family 7 genes found in P. chrysosporium. The results suggest that at least two of these will have differences in specificity and possibly catalytic mechanism, thus offering some explanation for the presence of Cel7 isozymes in this species, which are differentially expressed in response to various growth conditions.


Asunto(s)
Dominio Catalítico , Celulasa/química , Celulasa/clasificación , Modelos Moleculares , Phanerochaete/enzimología , Homología de Secuencia de Aminoácido , Secuencia de Aminoácidos , Sitios de Unión , Celulosa 1,4-beta-Celobiosidasa , Cristalografía por Rayos X , Enlace de Hidrógeno , Isoenzimas/química , Isoenzimas/clasificación , Datos de Secuencia Molecular , Estructura Secundaria de Proteína , Alineación de Secuencia , Trichoderma/enzimología
11.
J Mol Biol ; 308(2): 295-310, 2001 Apr 27.
Artículo en Inglés | MEDLINE | ID: mdl-11327768

RESUMEN

We present the three-dimensional structure of Trichoderma reesei endoglucanase 3 (Cel12A), a small, 218 amino acid residue (24.5 kDa), neutral pI, glycoside hydrolase family 12 cellulase that lacks a cellulose-binding module. The structure has been determined using X-ray crystallography and refined to 1.9 A resolution. The asymmetric unit consists of six non-crystallographic symmetry-related molecules that were exploited to improve initial multiple isomorphous replacement phasing, and subsequent structure refinement. The enzyme contains one disulfide bridge and is glycosylated at Asp164 by a single N-acetyl glucosamine residue. The protein has the expected fold for a glycoside hydrolase clan-C family 12 enzyme. It contains two beta-sheets, of six and nine strands, packed on top of one another, and one alpha-helix. The concave surface of the nine-stranded beta-sheet forms a large substrate-binding groove in which the active-site residues are located. In the active site, we find a carboxylic acid trio, similar to that of glycoside hydrolase families 7 and 16. The strictly conserved Asp99 hydrogen bonds to the nucleophile, the invariant Glu116. The binding crevice is lined with both aromatic and polar amino acid side-chains which may play a role in substrate binding. The structure of the fungal family 12 enzyme presented here allows a complete structural characterization of the glycoside hydrolase-C clan.


Asunto(s)
Celulasa/química , Trichoderma/enzimología , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Sitios de Unión , Cristalografía por Rayos X , Disulfuros/metabolismo , Glicosilación , Enlace de Hidrógeno , Modelos Moleculares , Datos de Secuencia Molecular , Pliegue de Proteína , Estructura Secundaria de Proteína , Alineación de Secuencia
12.
J Mol Biol ; 234(3): 905-7, 1993 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-8254686

RESUMEN

The catalytic core domains of cellobiohydrolase I (CBHI) and endoglucanase I (EGI) from Trichoderma reesei have been crystallized using the hanging drop vapour diffusion method. In the case of CBHI, use of polyethylene glycol 20,000, and calcium chloride at low pH produced good quality single crystals suitable for X-ray studies. The crystals belong to a primitive orthorhombic space group with unit cell dimensions a = 84.0 A, b = 86.2 A, c = 111.8 A, and diffract beyond 2.0 A resolution. Bipyramidal crystals of EGI core were grown from ammonium sulphate at pH 7.5. The crystals are tetragonal, either P4(1)22 or the enantiomorph P4(3)22, with cell dimensions a = b = 101.8 A and c = 198.0 A, and at best diffract to a resolution of 2.5 A.


Asunto(s)
Glicósido Hidrolasas/química , Trichoderma/enzimología , Sulfato de Amonio , Cloruro de Calcio , Celulosa 1,4-beta-Celobiosidasa , Cristalización , Cristalografía por Rayos X , Glicósido Hidrolasas/aislamiento & purificación , Indicadores y Reactivos , Polietilenglicoles , Conformación Proteica
13.
Protein Sci ; 4(6): 1056-64, 1995 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-7549870

RESUMEN

Cellobiohydrolase I (CBHI) of Trichoderma reesei has two functional domains, a catalytic core domain and a cellulose binding domain (CBD). The structure of the CBD reveals two distinct faces, one of which is flat and the other rough. Several other fungal cellulolytic enzymes have similar two-domain structures, in which the CBDs show a conserved primary structure. Here we have evaluated the contributions of conserved amino acids in CBHI CBD to its binding to cellulose. Binding isotherms were determined for a set of six synthetic analogues in which conserved amino acids were substituted. Two-dimensional NMR spectroscopy was used to assess the structural effects of the substitutions by comparing chemical shifts, coupling constants, and NOEs of the backbone protons between the wild-type CBD and the analogues. In general, the structural effects of the substitutions were minor, although in some cases decreased binding could clearly be ascribed to conformational perturbations. We found that at least two tyrosine residues and a glutamine residue on the flat face were essential for tight binding of the CBD to cellulose. A change on the rough face had only a small effect on the binding and it is unlikely that this face interacts with cellulose directly.


Asunto(s)
Celulosa/metabolismo , Glicósido Hidrolasas/metabolismo , Fragmentos de Péptidos/metabolismo , Trichoderma/enzimología , Adsorción , Secuencia de Aminoácidos , Sitios de Unión , Celulosa 1,4-beta-Celobiosidasa , Secuencia Conservada , Glicósido Hidrolasas/química , Espectroscopía de Resonancia Magnética , Modelos Moleculares , Datos de Secuencia Molecular , Fragmentos de Péptidos/química , Ingeniería de Proteínas , Estructura Secundaria de Proteína , Homología de Secuencia de Aminoácido , Relación Estructura-Actividad , Termodinámica
14.
Gene ; 63(1): 11-22, 1988.
Artículo en Inglés | MEDLINE | ID: mdl-3384334

RESUMEN

A novel endoglucanase from Trichoderma reesei, EGIII, has been purified and its catalytic properties have been studied. The gene for that enzyme (egl3) and cDNA have been cloned and sequenced. The deduced EGIII protein shows clear sequence homology to a Schizophyllum commune enzyme (M. Yaguchi, personal communication), but is very different from the three other T. reesei cellulases with known structure. Nevertheless, all the four T. reesei cellulases share two common, adjacent sequence domains, which apparently can be removed by proteolysis. These homologous sequences reside at the N termini of EGIII and the cellobiohydrolase CBHII, but at the C termini of EGI and CBHI. Comparison of the fungal cellulase structures has led to re-evaluation of hypotheses concerning the localization of the active sites.


Asunto(s)
Celulasa/genética , Proteínas Fúngicas/genética , Genes Fúngicos , Hongos Mitospóricos/enzimología , Trichoderma/enzimología , Secuencia de Aminoácidos , Secuencia de Bases , Celulasa/aislamiento & purificación , Celulasa/metabolismo , ADN/genética , Proteínas Fúngicas/aislamiento & purificación , Proteínas Fúngicas/metabolismo , Genes , Datos de Secuencia Molecular , Homología de Secuencia de Ácido Nucleico , Especificidad por Sustrato , Trichoderma/genética
15.
FEBS Lett ; 390(3): 339-44, 1996 Jul 29.
Artículo en Inglés | MEDLINE | ID: mdl-8706890

RESUMEN

The cellulases cellobiohydrolase 1 (CBH 1) and endoglucanase 1 (EG 1) from the fungus Trichoderma reesei are closely related with 40% sequence identity and very similar in structure. In CBH 1 the active site is enclosed by long loops and some antiparallel beta-strands forming a 40 A long tunnel, whereas in EG 1 part of those loops are missing so that the enzyme has a more common active site groove. Both enzymes were immobilized on silica and these materials were used as chiral stationary phases for chromatographic separation of the enantiomers of two chiral drugs, propranolol and alprenolol. The CBH 1 phase showed much better resolution than did the EG 1 phase, suggesting that the tunnel structure of the protein may play an important role in the chiral separation. The chiral compounds were found to be competitive inhibitors of both enzymes when p-nitrophenyl lactoside (pNPL) was used as substrate. (S)-enantiomers showed stronger inhibitory effects and also longer retention time on the stationary phases than the (R)-enantiomers. The consistency between kinetic data and retention on the stationary phases clearly shows that the enzymatically active sites of CBH 1 and EG 1 are involved in chiral recognition.


Asunto(s)
Celulasa/química , Celulasa/metabolismo , Trichoderma/enzimología , Alprenolol/farmacología , Sitios de Unión , Unión Competitiva , Celulasa/antagonistas & inhibidores , Celulosa 1,4-beta-Celobiosidasa , Cromatografía , Inhibidores Enzimáticos/farmacología , Glicósidos/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Modelos Moleculares , Estructura Molecular , Propranolol/farmacología , Conformación Proteica
16.
FEBS Lett ; 378(1): 51-6, 1996 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-8549801

RESUMEN

A computer simulation model for the binding of ligands to a totally anisotropic surface (infinite two-dimensional square lattice) with overlapping binding sites has been developed. The validity of the simulation has been proven by comparison with cases where the correct results are known. The simulation of kinetics shows that when the lattice is close to saturation, the true equilibrium state is reached extremely slowly due to a lot of rearranging of the ligands on the lattice. Based on these findings, the terms 'apparent saturation' and 'apparent maximum coverage' have been introduced and defined. The largest discrepancies between 'apparent maximum coverage' and the theoretically predicted value were observed for ligands of large size and/or irregular shape. As an example, the model has been applied to describe the binding of cellobiohydrolase-I core to Avicel. A formula for calculation of the intrinsic binding constant, maximal binding capacity and specific surface of cellulose from real binding data has been derived.


Asunto(s)
Celulasa/metabolismo , Celulosa/metabolismo , Simulación por Computador , Adsorción , Sitios de Unión , Celulosa/química , Celulosa 1,4-beta-Celobiosidasa , Glicósido Hidrolasas/química , Cinética , Matemática , Unión Proteica , Reproducibilidad de los Resultados , Trichoderma/enzimología
17.
FEBS Lett ; 369(2-3): 233-8, 1995 Aug 07.
Artículo en Inglés | MEDLINE | ID: mdl-7649263

RESUMEN

The cDNA of cellobiose dehydrogenase (CDH) from Phanerochaete chrysosporium has been cloned and sequenced. The 5' end was obtained by PCR amplification. The cDNA contains 2310 translated bases excluding the poly(A) tail. The deduced mature protein contains 770 amino acid residues and is preceded by a 18 residue long signal peptide. The regions of the amino acid sequence corresponding to the heme and FAD domains of CDH were identified as well as the nucleotide-binding motif, the disulfide pairing and a methionine residue chelating the heme iron. No homologous sequences were found for the heme domain, however, the FAD domain appears to be distantly related to the GMC oxidoreductase family.


Asunto(s)
Basidiomycota/genética , Deshidrogenasas de Carbohidratos/genética , Genes Fúngicos/genética , Secuencia de Aminoácidos , Aminoácidos/análisis , Secuencia de Bases , Basidiomycota/enzimología , Deshidrogenasas de Carbohidratos/química , Deshidrogenasas de Carbohidratos/aislamiento & purificación , Clonación Molecular , ADN Complementario/genética , ADN de Hongos/genética , Flavina-Adenina Dinucleótido , Hemo , Datos de Secuencia Molecular , Alineación de Secuencia , Análisis de Secuencia de ADN
18.
J Chromatogr A ; 855(1): 3-55, 1999 Sep 03.
Artículo en Inglés | MEDLINE | ID: mdl-10514972

RESUMEN

Since chromatography of ions is a widely used technique in analytical chemistry a basic understanding of the retention mechanism is important. The principles of the different retention models that have been proposed are examined in this paper. The focus is on those models that are derived from the physical chemistry of charged surfaces immersed in an electrolyte solution. In the first two sections the theory for the electrical double layer and the Donnan potential are presented together with experimental results from surface and colloid chemistry. In Section 3 a comparison between stoichiometric and non-stoichiometric models is made. In this section the physical meaning of the retention factor is also examined. The Donnan model and the different double layer models developed for ion exchange chromatography of small ions are discussed in Section 4. The next section presents the corresponding models that have been developed for ion pair chromatography and compares them with the experimental findings. The theoretical modifications needed when going from small ions to ionic macromolecules are discussed in the last section and the developed models are compared with the experimental results.


Asunto(s)
Cromatografía/métodos , Iones , Modelos Químicos
19.
J Chromatogr A ; 892(1-2): 291-301, 2000 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-11045494

RESUMEN

For capillary electrochromatography (CEC) to be a generally used analytical technique the origin of the unusual, and often unwanted, peak shapes, which regularly occur for ionic compounds, must be understood. A mass balance analysis is the most fundamental approach to investigate the origin of non-linear effects during the migration of an eluite. Such an analysis shows that a CEC system composed of ionic compounds has a complex behaviour and that a variety of peak shapes for an eluite ion is expected. In this paper it is shown that the mass balance analysis is rationalised by the introduction of the non-dimensional electrochromatographic migration number omega. This number is defined as the ratio Eu/v0k, where E is the effective electric field strength in the eluite zone, u the mobility of the eluite, v0 the linear velocity of the mobile phase and k the chromatographic capacity factor of the eluite. This work is focussed on the theoretical behaviour of a CEC system for analytical applications, i.e., in the limit of low eluite concentrations. Even under analytical conditions the three-component system studied in this paper shows strong peak broadening when omega has values close to unity.


Asunto(s)
Cromatografía Capilar Electrocinética Micelar/métodos , Iones
20.
J Chromatogr A ; 887(1-2): 187-98, 2000 Jul 28.
Artículo en Inglés | MEDLINE | ID: mdl-10961311

RESUMEN

The fundamental migration theories for chromatography and electrophoresis are both based on a solution of the mass balance equation. The corresponding analysis for an electrochromatographic system has previously been published and is analysed in more detail in this paper. It is shown that the resulting equation, Eq. (8) in this paper, is in agreement with both electrophoretic and chromatographic theories and that when these migration modes are mixed a complicated migration behaviour emerge. These complications arise, if the comparison is done with electrophoretic theory, because the presence of the stationary phase creates a number of new restrictions on the system (electroneutrality on the stationary phase and simultaneous equilibrium for all components between the eluent and stationary phase). From a mathematical point of view, these restrictions make it difficult for the system to satisfy the coherence condition and this in turn may lead to an anomalous behaviour. To minimise the possibility for a complicated behaviour it is advisable to avoid too much mixing of the two migration mechanisms and/or to match the mobilities of the ionic components in the eluent phase with the mobility of the analyte ion.


Asunto(s)
Electroforesis Capilar/métodos , Iones/química , Modelos Químicos , Terminología como Asunto
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