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1.
Chemistry ; 19(2): 549-57, 2013 Jan 07.
Artículo en Inglés | MEDLINE | ID: mdl-23180418

RESUMEN

Cytochrome P450 (CYP) 7B1 is a steroid cytochrome P450 7α-hydroxylase that has been linked directly with bile salt synthesis and hereditary spastic paraplegia type 5 (SPG5). The enzyme provides the primary metabolic route for neurosteroids dehydroepiandrosterone (DHEA), cholesterol derivatives 25-hydroxycholesterol (25-HOChol), and other steroids such as 5α-androstane-3ß,17ß-diol (anediol), and 5α-androstene-3ß,17ß-diol (enediol). A series of investigations including homology modeling, molecular dynamics (MD), and automatic docking, combined with the results of previous experimental site-directed mutagenesis studies and access channels analysis, have identified the structural features relevant to the substrate selectivity of CYP7B1. The results clearly identify the dominant access channels and critical residues responsible for ligand binding. Both binding free energy analysis and total interaction energy analysis are consistent with the experimental conclusion that 25-HOChol is the best substrate. According to 20 ns MD simulations, the Phe cluster residues that lie above the active site, particularly Phe489, are proposed to merge the active site with the adjacent channel to the surface and accommodate substrate binding in a reasonable orientation. The investigation of CYP7B1-substrate binding modes provides detailed insights into the poorly understood structural features of human CYP7B1 at the atomic level, and will be valuable information for drug development and protein engineering.


Asunto(s)
Dominio Catalítico , Esteroide Hidroxilasas/química , Esteroide Hidroxilasas/metabolismo , Familia 7 del Citocromo P450 , Diseño de Fármacos , Humanos , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Bibliotecas de Moléculas Pequeñas/metabolismo , Especificidad por Sustrato , Termodinámica
2.
J Phys Chem A ; 117(13): 2835-43, 2013 Apr 04.
Artículo en Inglés | MEDLINE | ID: mdl-23488897

RESUMEN

Using the strong electron hole cage C20F19 acceptor, the NH2...M/M3O (M = Li, Na, and K) complicated donors with excess electron, and the unusual σ chain (CH2)4 bridge, we construct a new kind of electride molecular salt e(-)@C20F19-(CH2)4-NH2...M(+)/M3O(+) (M = Li, Na, and K) with excess electron anion inside the hole cage (to be encapsulated excess electron-hole pair) serving as a new A-B-D strategy for enhancing nonlinear optical (NLO) response. An interesting push-pull mechanism of excess electron generation and its long-range transfer is exhibited. The excess electron is pushed out from the (super)alkali atom M/M3O by the lone pair of NH2 in the donor and further pulled inside the hole cage C20F19 acceptor through the efficient long σ chain (CH2)4 bridge. Owing to the long-range electron transfer, the new designed electride molecular salts with the excess electron-hole pair exhibit large NLO response. For the e(-)@C20F19-(CH2)4-NH2...Na(+), its large first hyperpolarizability (ß0) reaches up to 9.5 × 10(6) au, which is about 2.4 × 10(4) times the 400 au for the relative e(-)@C20F20...Na(+) without the extended chain (CH2)4-NH2. It is shown that the new strategy is considerably efficient in enhancing the NLO response for the salts. In addition, the effects of different bridges and alkali atomic number on ß0 are also exhibited. Further, three modulating factors are found for enhancing NLO response. They are the σ chain bridge, bridge-end group with lone pair, and (super)alkali atom. The new knowledge may be significant for designing new NLO materials and electronic devices with electrons inside the cages. They may also be the basis of establishing potential organic chemistry with electron-hole pair.

3.
J Phys Chem A ; 116(5): 1475-85, 2012 Feb 09.
Artículo en Inglés | MEDLINE | ID: mdl-22239679

RESUMEN

Alkane C-H bond activation by various catalysts and enzymes has attracted considerable attention recently, but many issues are still unanswered. The conversion of ethane to ethanol and ethene by bare [Fe(III)═O](+) has been explored using density functional theory and coupled-cluster method comprehensively. Two possible reaction mechanisms are available for the entire reaction, the direct H-abstraction mechanism and the concerted mechanism. First, in the direct H-abstraction mechanism, a direct H-abstraction is encountered in the initial step, going through a collinear transition state C···H···O-Fe and then leading to the generation of an intermediate Fe-OH bound to the alkyl radical weakly. The final product of the direct H-abstraction mechanism is ethanol, which is produced by the hydroxyl group back transfer to the carbon radical. Second, in the concerted reaction mechanism, the H-abstraction process is characterized via overcoming four/five-centered transition states (6/4)TSH_c5 or (4)TSH_c4. The second step of the concerted mechanism can lead to either product ethanol or ethene. Moreover, the major product ethene can be obtained through two different pathways, the one-step pathway and the stepwise pathway. It is the first report that the former pathway starting from (6/4)IM_c to the product can be better described as a proton-coupled electron transfer (PCET). It plays an important role in the product ethene generation according to the CCSD(T) results. The spin-orbital coupling (SOC) calculations demonstrate that the title reaction should proceed via a two-state reactivity (TSR) pattern and that the spin-forbidden transition could slightly lower the rate-determining energy barrier height. This thorough theoretical study, especially the explicit electronic structure analysis, may provide important clues for understanding and studying the C-H bond activation promoted by iron-based artificial catalysts.

4.
J Comput Chem ; 32(9): 2005-11, 2011 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-21484837

RESUMEN

Several new electride compounds M@pyrrole (M = Li, Na, and K), Li@AR (AR = indole, thiophene, and benzene), Li@tryptophan and Li@serotonin were designed and investigated, which exhibit considerably large first hyperpolarizabilities (ß(0)) (6705, 1116, 11399, 5781, 4808, 1536, 8106, and 9389 au, respectively) by comparison with their corresponding sole molecules pyrrole (ß(0) = 30 au), indole (104 au), thiophene (6 au), benzene (0 au), tryptophan (159 au) and serotonin (151 au), respectively. The computational results revealed that the interaction of the alkali metal atom with π-conjugated aromatic ring (AR) is one effectively new approach to produce diffuse excess electron to get a large ß(0) value, which is advantageous for the design of the novel high-performance NLO materials with π-conjugated AR: alkali metal atoms doped nanomaterials and biomolecules.

5.
J Comput Chem ; 32(9): 2012-21, 2011 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-21469164

RESUMEN

For unusual e(2)@C(60)F(60)(I(h), D(6h), and D(5d)) cage structures with two excess electrons, it is reported that not only the lone pair in singlet state but also two single excess electrons in triplet state can be encapsulated inside the C(60)F(60) cages to form single molecular solvated dielectrons. The interesting relationship between the shape of the cage and the spin state of the system has revealed that ground states are singlet state for spherical shaped e(2)@C(60)F(60)(I(h)) and triplet states for short capsular shaped e(2)@C(60)F(60)(D(6h)) and long capsular shaped e(2)@C(60)F(60)(D(5d)), which shows a spin evolution from the singlet to triplet state with the deformation of the cage from spherical to capsular shape. For these excess electron systems, the three ground state structures have large vertical electron detachment energies (VDEs (I) of 1.720-2.283 eV and VDEs (II) of 3.959-5.288 eV), which shows their stabilities and suggests that the large C(60)F(60) cage is the efficient container of excess electrons.


Asunto(s)
Ácidos Carboxílicos/química , Electrones , Fulerenos/química , Modelos Químicos , Modelos Moleculares , Estructura Molecular
6.
Chemistry ; 17(8): 2414-9, 2011 Feb 18.
Artículo en Inglés | MEDLINE | ID: mdl-21319235

RESUMEN

Graphene nanoribbon (GNR) has been used, for the first time, as an excellent conjugated bridge in a donor-conjugated bridge-acceptor (D-B-A) framework to design high-performance second-order nonlinear optical materials. Owing to the unique diradical planar conjugated bridge of GNR, D(NH(2))-GNR-A(NO(2)) exhibits exceptionally large static first hyperpolarizability (ß(0)) up to 2.5×10(6) a.u. (22000×10(-30) esu) for H(2)N-(7,3)ZGNR-NO(2) (ZGNR=zigzag-edged GNR), which is about 15 times larger than the recorded value of ß(0) (1470×10(-30) esu) for the D-A polyene reported by Blanchard-Desce et al. [Chem. Eur. J. 1997, 3, 1091]. Interestingly, we have found that the size effect of GNR plays a key role in increasing ß(0) for the H(2)N-GNR-NO(2) system, in which the width effect of GNR perpendicular to the D-A direction is superior to the length effect along the D-A direction.

7.
Phys Chem Chem Phys ; 13(7): 2732-7, 2011 Feb 21.
Artículo en Inglés | MEDLINE | ID: mdl-21152527

RESUMEN

Graphene has been viewed as one of the most promising materials in many fields. Recently, it has been found that by using Cu-decoration at the edge of zigzag graphene nanoribbons (ZGNR), a novel kind of planar tetracoordinate carbon (ptC) strip can be formed. In this paper, we investigate the edge-decoration of armchair graphene nanoribbons (AGNR) by various atom types and find that two new kinds of ptC strip can be effectively formed by using Be or B decoration. For the Be-decorated AGNR, the edge Be atoms take the form of a "zigzag-like" chain, and all the edge C atoms have a ptC nature. However, for the B-decorated AGNR, the edge B atoms form an infinite yet "fractured" chain consisting of separate B(4)-subunits, which results in only 50% of the edge C atoms being ptCs, in contrast with Be-decorated AGNR and Cu-decorated ZGNR. The high thermal stability of both types of ptC-based AGNR is indicated by isomeric sampling and molecular dynamics simulations.

8.
J Phys Chem A ; 115(15): 3576-82, 2011 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-21443216

RESUMEN

The methane (CH(4)) hydrogen abstraction reaction by linear butadiynyl radical C(4)H (CCCCH) has been investigated by direct ab initio dynamics over a wide temperature range of 100-3000 K, theoretically. The potential energy surfaces (PESs) have been constructed at the CCSD(T)/aug-cc-pVTZ//BB1K/6-311G(d,p) levels of theory. Two different hydrogen abstraction channels by C(1) and C(4) of C(4)H (C(1)C(2)C(3)C(4)H) have been considered. The results indicate that the C(1) position of C(4)H is a more reactive site. The electron transfer behaviors of two possible channels are also analyzed by quasi-restricted orbital (QRO) in detail. The rate constants calculated by canonical variational transition-state theory (CVT) with the small-curvature tunneling correction (SCT) are in excellent agreement with available experimental values. The normal and three-parameter expressions of Arrhenius rate constants are also provided within 100-3000 K. It is expected to be helpful for further studies on the reaction dynamics behaviors over a wide temperature range where no experimental data is available so far.


Asunto(s)
Metano/química , Teoría Cuántica , Radicales Libres/química , Temperatura
9.
J Phys Chem A ; 115(8): 1418-22, 2011 Mar 03.
Artículo en Inglés | MEDLINE | ID: mdl-21302909

RESUMEN

It is well-known that single H3N-HCl and H2O-HCl acid-base pairs do not react to form the ion pairs, H4N(+)Cl(-) and H3O(+)Cl(-), in isolation. On the basis of ab initio method, we propose a physical method of external electric field (Eext) to drive the proton transfer from acid (HCl) to base (NH3/H2O). Our results show that when Eext along the proton-transfer direction achieves or exceeds the critical electric field (Ec), the proton transfer occurs, such as, the Ec values of proton transfer for H3N-HCl and H2O-HCl are 54 × 10(-4) and 210 × 10(-4) au, respectively. And the degree of the proton transfer can be controlled by modulating the strength of Eext. Furthermore, we estimate the inductive strength of an excess electron (Ee) equivalent to the Eext = 125 × 10(-4) au, which is greater than the Ec (54 × 10(-4) au) of NH3-HCl but less than the Ec (210 × 10(-4) au) of H2O-HCl. This explains well the anion photoelectron spectroscopy [Eustis et al. Science 2008, 319, 936] that an excess electron can trigger the proton transfer for H3N-HCl but not for H2O-HCl. On the basis of the above estimation, we also predict that two excess electrons can induce H2O-HCl to undergo the proton transfer and form the ion pair H3O(+)Cl(-).


Asunto(s)
Amoníaco/química , Campos Electromagnéticos , Ácido Clorhídrico/química , Modelos Químicos , Protones , Agua/química , Electrones
10.
J Chem Phys ; 135(8): 084309, 2011 Aug 28.
Artículo en Inglés | MEDLINE | ID: mdl-21895187

RESUMEN

In the present paper, the possible ion associated species in pure Na(2)SO(4) and mixed Na(2)SO(4)/MgSO(4) aqueous solutions are investigated via the ab initio method at the HF/6-31+G∗ level. The vibrational v(1)-SO(4)(2-) band is analyzed. For the unhydrated species, when the number of metal ions around the SO(4)(2-) ion is less than 3, the dominating effect to the v(1)-SO(4)(2-) band is the polarization of the cations, while the M-O bonding will be dominating as the number is equal to or more than 3. For the hydrated species, the coordinated structures of the Na(+) ion in all ion pairs are not stable due to the strong effect of the SO(4)(2-) ion but relatively stable in the triple ion (TI) clusters since there are fewer vacant hydration sites around the SO(4)(2-). The v(1)-SO(4)(2-) frequencies are close to that of the hydrated SO(4)(2-) ion in the ion pairs and larger in both Na(2)SO(4) and Na(2)SO(4)/MgSO(4) TI clusters. On the basis of our calculated results, the evolvement of Raman spectra in the Na(2)SO(4)/MgSO(4) droplet with the molar ratio of 1:1 is explained.


Asunto(s)
Sulfato de Magnesio/química , Sulfatos/química , Modelos Moleculares , Soluciones , Agua/química
11.
J Struct Biol ; 169(1): 14-24, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19747549

RESUMEN

The enediyne ring chromophore with strong DNA cleavage activity of neocarzinostatin is labile and therefore stabilization by forming the complex (carrying protein+chromophore: holo-NCS). Holo-NCS has gained much attention in clinical use as well as for drug delivery systems, but the chromophore-releasing mechanism to trigger binding to the target DNA with high affinity and producing DNA damage remain unclear. Three possible pathways were initially determined by conventional MD, essential dynamics and essential dynamics sampling. One of the paths runs along the naphthoate moiety; another runs along the amino sugar moiety; the third along the enediyne ring. Further, calculated forces and time by FPMD (force-probe molecular dynamics) suggest that the opening of the naphthoate moiety is most favorable pathway and Leu45, Phe76 and Phe78 all are key residues for chromophore release. In addition, conformational analyses indicate that the chromophore release is only local motions for the protein.


Asunto(s)
Simulación de Dinámica Molecular , Cinostatina/química , Cinostatina/metabolismo , Estructura Secundaria de Proteína , Cinostatina/análogos & derivados
12.
J Comput Chem ; 31(1): 195-203, 2010 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-19421999

RESUMEN

A new kind of solvated electron systems, sphere-shaped e(-)@C60F60 (I(h)) and capsule-shaped e(-)@C60F60 (D6h), in contrast to the endohedral complex M@C60, is represented at the B3LYP/6-31G(d) + dBF (diffusive basis functions) density functional theory. It is proven, by examining the singly occupied molecular orbital (SOMO) and the spin density map of e(-)@C60F60, that the excess electron is indeed encapsulated inside the C60F60 cage. The shape of the electron cloud in SOMO matches with the shape of C60F60 cage. These cage-like single molecular solvated electrons have considerably large vertical electron detachment energies VDE of 4.95 (I(h)) and 4.67 eV (D6h) at B3LYP/6-31+G(3df) + dBF level compared to the VDE of 3.2 eV for an electron in bulk water (Coe et al., Int Rev Phys Chem 2001, 20, 33) and that of 3.66 eV for e(-)@C20F20 (Irikura, J Phys Chem A 2008, 112, 983), which shows their higher stability. The VDE of the sphere-shaped e(-)@C60F60 (I(h)) is greater than that of the capsule-shaped e(-)@C60F60 (D6h), indicating that the excess electron prefers to reside in the cage with the higher symmetry to form the more stable solvated electron. It is also noticed that the cage size [7.994 (I(h)), 5.714 and 9.978 A (D6h) in diameter] is much larger than that (2.826 A) of (H2O)20- dodecahedral cluster (Khan, Chem Phys Lett 2005, 401, 85).

13.
Chemphyschem ; 11(16): 3505-10, 2010 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-20886591

RESUMEN

Density functional theory calculations are used to study the healing process of a defective CNT (i.e. (8,0) CNT) by CO molecules. The healing undergoes three evolutionary steps: 1) the chemisorption of the first CO molecule, 2) the incorporation of the C atom of CO into the CNT, accompanied by the adsorption of the leaving O atom on the CNT surface, 3) the removal of the adsorbed O atom from the CNT surface by a second CO molecule to form CO(2) and the perfect CNT. Overall, adsorption of the first CO reveals a barrier of 2.99 kcal mol(-1) and is strongly exothermal by 109.11 kcal mol(-1), while adsorption of a second CO has an intrinsic barrier of 32.37 kcal mol(-1)and is exothermal by 62.34 kcal mol(-1). In light of the unique conditions of CNT synthesis, that is, high temperatures in a closed container, the healing of the defective CNT could be effective in the presence of CO molecules. Therefore, we propose that among the available CNT synthesis procedures, the good performance of chemical vapor decomposition of CO on metal nanoparticles might be ascribed to the dual role of CO, that is, CO acts both as a carbon source and a defect healer. The present results are expected to help a deeper understanding of CNT growth.

14.
Chemphyschem ; 11(10): 2199-204, 2010 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-20480487

RESUMEN

The question whether the emitter of yellow-green firefly bioluminescence is the enol or keto-constrained form of oxyluciferin (OxyLH(2)) still has no definitive answer from experiment or theory. In this study, Arg220, His247, adenosine monophosphate (AMP), Water324, Phe249, Gly343, and Ser349, which make the dominant contributions to color tuning of the fluorescence, are selected to simulate the luciferase (Luc) environment and thus elucidate the origin of firefly bioluminescence. Their respective and compositive effects on OxyLH(2) are considered and the electronic absorption and emission spectra are investigated with B3LYP, B3PW91, and PBE1KCIS methods. Comparing the respective effects in the gas and aqueous phases revealed that the emission transition is prohibited in the gas phase but allowed in the aqueous phase. For the compositive effects, the optimized geometry shows that OxyLH(2) exists in the keto(-1) form when Arg220, His247, AMP, Water324, Phe249, Gly343, and Ser349 are all included in the model. Furthermore, the emission maximum wavelength of keto(-1)+Arg+His+AMP+H(2)O+Phe+Gly+Ser is close to the experimental value (560 nm). We conclude that the keto(-1) form of OxyLH(2) is a possible emitter which can produce yellow-green bioluminescence because of the compositive effects of Arg220, His247, AMP, Water324, Phe249, Gly343, and Ser349 in the luciferase environment. Moreover, AMP may be involved in enolization of the keto(-1) form of OxyLH(2). Water324 is indispensable with respect to the environmental factors around luciferin (LH(2)).


Asunto(s)
Luciferina de Luciérnaga/química , Indoles/química , Sustancias Luminiscentes/química , Pirazinas/química , Adenosina Monofosfato/química , Animales , Cristalografía por Rayos X , Fluorescencia , Isomerismo , Luciferasas de Luciérnaga/química , Modelos Teóricos , Estructura Terciaria de Proteína , Agua/química
15.
Phys Chem Chem Phys ; 12(31): 8847-55, 2010 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-20532360

RESUMEN

Expanding the non-knot region of the famous Möbius strip with topological one-sided characteristics, an interesting structure of a Möbius basket molecule with all real frequencies was obtained at the B3LYP/6-31G(d) level for the first time. This structure contains six fused five-membered pyrrole rings contrasting with the isolated pentagon rule for the fullerenes. The twisted handle joints the outer and inner surfaces of the bowl to form a one-sided container molecule. Comparing the Möbius basket to its isomers of a Möbius strip and a normal basket, the framework shape effects on the structure and properties are systematically exhibited. Especially, (1) the basket-making effect increases kinetic stability (the HOMO-LUMO gap increases from 1.116 eV for Möbius strip to 1.608 eV for Möbius basket); (2) from the normal basket to the Möbius basket, the twisting effect obviously increases the static first hyperpolarizability (from 2836 to 3773 au) and IP (from 6.622 to 6.857 eV). It is found that the aza atom, knot, the bowl, and the combination of the knot and bowl units are important regulating factors for the charge transfer (CT) direction in the crucial transitions. This provides the possibility to control the charge transfer direction in crucial transitions by variation of the structures, which is important for the designs of the new optical and photoelectric materials and devices with good performances.

16.
Phys Chem Chem Phys ; 12(35): 10562-8, 2010 Sep 21.
Artículo en Inglés | MEDLINE | ID: mdl-20614052

RESUMEN

Differing from the reported strategy of push or pull electron effects of the complexant, a new strategy of the combination effects of both push and pull electrons of the complexant to enhance the first hyperpolarizability is performed with two Li atom doped complexants with a pair of difluorophenyl subunit rings. Large variance of the static first hyperpolarizabilities (beta(0)) are exhibited at the MP2/6-311++G(d,p) level. The order of the beta(0) values is 2.9 x10(2) (complexant UD) << 5.9 x 10(3) (LL) < 1.9 x 10(4) (H-L) < 2.3 x 10(4) (H(F)-L) < 3.2 x 10(4) (L-L) < 7.8 x 10(5) a.u. (H(F)-L(F)). It is found that H(F)-L(F) with the edge-type push-pull electronic effect of the complexant has the largest beta(0). The edge-type push-pull electronic effect brings a 2700 times increase in the beta(0) from the UD to H(F)-L(F) structure. It shows that the push-pull electronic effect is a highly effective strategy to enhance the beta(0) value. The beta(0) (7.8 x 10(5) a.u.) of the H(F)-L(F) is considerable, due to the small DeltaE and the very large Delta mu (18.085 a.u.), which comes from the corresponding long-range charge transfer transition. It is interesting that a pair of subunit rings of the complexant may have different electronic effects. In H-L and H(F)-L(F), the left ring with a longer distance between Li and the subunit ring exhibits a push electronic effect, while the right ring with the shorter distance exhibits a pull electronic effect. This work may contribute to the development of potential high-performance nonlinear optical materials.

17.
J Phys Chem A ; 114(35): 9496-506, 2010 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-20704295

RESUMEN

A detailed theoretical study is performed at the B3LYP/6-311G(d,p) and G3B3 (single-point) levels as an attempt to explore the reaction mechanism of CH with C(3)H(6). It is shown that the barrierless association of CH with C(3)H(6) forms two energy-rich isomers CH(3)-cCHCHCH(2) (1), and CH(2)CH(2)CHCH(2) (4). Isomers 1 and 4 are predicted to undergo subsequent isomerization and dissociation steps leading to ten dissociation products P(1) (CH(3)-cCHCHCH + H), P(2) (CH(3)-cCCHCH(2) + H), P(3) (cCHCHCH(2) + CH(3)), P(4) (CH(3)CHCCH(2) + H), P(5) (cis-CH(2)CHCHCH(2) + H), P(6) (trans-CH(2)CHCHCH(2) + H), P(7) (C(2)H(4) + C(2)H(3)), P(8) (CH(3)CCH + CH(3)), P(9) (CH(3)CCCH(3) + H) and P(12) (CH(2)CCH(2) + CH(3)), which are thermodynamically and kinetically possible. Among these products, P(5), P(6), and P(7) may be the most favorable products with comparable yields; P(1), P(2), and P(3) may be the much less competitive products, followed by the almost negligible P(4), P(8), P(9), and P(12). Since the isomers and transition states involved in the CH + C(3)H(6) reaction all lie lower than the reactant, the title reaction is expected to be fast, which is consistent with the measured large rate constant in experiment. The present study may lead us to a deep understanding of the CH radical chemistry.

18.
J Phys Chem A ; 114(26): 7173-8, 2010 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-20536214

RESUMEN

Electronic states of the CH(3)Se and its cation CH(3)Se(+) have been studied using the complete active space self-consistent field (CASSCF) and multiconfiguration second-order perturbation theory (CASPT2) methods in conjunction with the ANO-RCC(TZP) basis set. To investigate the Jahn-Teller effect on the CH(3)Se radical, C(s) symmetry was used for CH(3)Se in calculations. The results show that the Jahn-Teller effect is very small (69 cm(-1)) and the 1(2)A' state is slightly more stable than the 1(2)A'' state (8 cm(-1)). The CH(3)Se has been found to have a 1(2)A' ground state with a C-Se bond distance of 1.975 A. The computed C-Se stretching nu(6)(a') frequency is 554.1 cm(-1), which is in good agreement with the experimental values of 600 +/- 60 cm(-1). The calculations for CH(3)Se at 3.621 and 5.307 eV are attributed to 1(2)A' --> 2(2)A'(1(2)A(1)) and 1(2)A' --> 2(2)A'', respectively. The vertical and adiabatic ionization energies were obtained to compare with the PES data.


Asunto(s)
Electrones , Compuestos de Organoselenio/química , Teoría Cuántica , Cationes/química , Oxígeno/química , Azufre/química , Termodinámica , Vibración
19.
J Phys Chem A ; 114(43): 11782-7, 2010 Nov 04.
Artículo en Inglés | MEDLINE | ID: mdl-20882986

RESUMEN

To realize the chemistry of a multicage organic molecule with excess electron, as a model, by confining an excess electron inside a double-cage single molecule, the structures of e⁻@C24F22(NH)2C20F18 (e⁻@AB) and e⁻@C20F18(NH)2C20F18 (e⁻@BB') are obtained at the B3LYP/6-31G(d) + 4s4p theory level. It is confirmed that the excess electron is mainly confined inside one cage with larger interior electronic attractive potential (A for e⁻@AB and B for e⁻@BB') in the ground state, while the electron is localized in the other one in the first excited state. Owing to such excess electron localizations, an interesting intercage excess electron transfer transition takes places. This intercage excess electron transfer transition exhibits five characteristics: (1) the excess electron transfer from one cage to another (A → B for e⁻@AB and B → B' for e⁻@BB''); (2) the transition is between the ground and first excited state; (3) the wavelength and strength are the largest; (4) the transition accompanies a significant charge transfer (Δq > 0.8) and molecular dipole moment change (Δµ > 20 D); (5) the transition corresponds to SOMO → LUMO. For the transition, the oscillator strength is larger and the wavelength is shorter for the asymmetric structure (e⁻@AB) than for the symmetric one (e⁻@BB'), which indicates that the intercage excess electron transfer transition may be regulated by changing the size of cage. This work is useful for the designs of organic electronic sponges (porous organic electrides), organic conductor with excess electrons, and photoelectric and nanoelectronic devices.


Asunto(s)
Electrones , Modelos Moleculares , Teoría Cuántica
20.
J Phys Chem A ; 114(8): 2874-84, 2010 Mar 04.
Artículo en Inglés | MEDLINE | ID: mdl-20146458

RESUMEN

A detailed theoretical study for the poorly understood ion-molecule reaction of CHCl(-) with CS(2) is explored at the B3LYP/6-311++G(d,p) and CCSD(T)/6-311++G(3df,2p) (single-point) levels. Various possible reaction pathways are considered. On the doublet potential energy surface, five dissociation products are both thermodynamically and kinetically possible. Among these products, P(7) (SCHCl(-) + CS) may be the most favorable product with predominant abundances, whereas P(1) (Cl(-) + SCHCS) and P(2) (Cl(-) + HCCSS) may be the second and third feasible products followed by the almost negligible P(3) (Cl(-) + HSCCS), P(4) (CClS(-) + HCS), and P(6) (S-cCCS(-) + HCl). Because the isomers and transition states involved in the most feasible pathways all lie below the reactant, the title reaction is expected to be fast, which is consistent with the measured large rate constant in recent experiment. The present paper may provide a useful guide for understanding other analogous ion-molecule reactions such as CHF(-) and CHBr(-) with CS(2), COS, and CO(2).

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