Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure.

Olfactomedin-1 (Olfm1; also known as noelin and pancortin) is a member of the olfactomedin domain-containing superfamily and a highly expressed neuronal glycoprotein important for nervous system development. It binds a number of secreted proteins and cell surface-bound receptors to induce cell signaling processes. Using a combined approach of x-ray crystallography, solution scattering, analytical ultracentrifugation, and electron microscopy we determined that full-length Olfm1 forms disulfide-linked tetramers with a distinctive V-shaped architecture. The base of the "V" is formed by two disulfide-linked dimeric N-terminal domains. Each of the two V legs consists of a parallel dimeric disulfide-linked coiled coil with a C-terminal ß-propeller dimer at the tips. This agrees with our crystal structure of a C-terminal coiled-coil segment and ß-propeller combination (Olfm1(coil-Olf)) that reveals a disulfide-linked dimeric arrangement with the ß-propeller top faces in an outward exposed orientation. Similar to its family member myocilin, Olfm1 is stabilized by calcium. The dimer-of-dimers architecture suggests a role for Olfm1 in clustering receptors to regulate signaling and sheds light on the conformation of several other olfactomedin domain family members.

Multivalent Fucosides Targeting ß-Propeller Lectins from Lung Pathogens with Promising Anti-Adhesive Properties.

Fungal and bacterial pathogens causing lung infections often use lectins to mediate adhesion to glycoconjugates at the surface of host tissues. Given the rapid emergence of resistance to the treatments in current use, ß-propeller lectins such as FleA from Aspergillus fumigatus, SapL1 from Scedosporium apiospermum, and BambL from Burkholderia ambifaria have become appealing targets for the design of anti-adhesive agents. In search of novel and cheap anti-infectious agents, we synthesized multivalent compounds that can display up to 20 units of fucose, the natural ligand. We obtained nanomolar inhibitors that are several orders of magnitude stronger than their monovalent analogue according to several biophysical techniques (i.e., fluorescence polarization, isothermal titration calorimetry, and bio-layer interferometry). The reason for high affinity might be attributed to a strong aggregating mechanism, which was examined by analytical ultracentrifugation. Notably, the fucosylated inhibitors reduced the adhesion of A. fumigatus spores to lung epithelial cells when administered 1 h before or after the infection of human lung epithelial cells. For this reason, we propose them as promising anti-adhesive drugs for the prevention and treatment of aspergillosis and related microbial lung infections.

Tuning the size of all-HPMA polymeric micelles fabricated by solvent extraction.

The size of polymeric micelles crucially affects their tumor accumulation, penetration and antitumor efficacy. In the present study, micelles were formed based on amphiphilic poly(N-2-hydroxypropyl methacrylamide)-block-poly(N-2-benzoyloxypropyl methacrylamide) (p(HPMAm)-b-p(HPMAm-Bz)) via the solvent extraction method, and factors impacting micelle size were systematically studied, including the molecular weight of the polymers, homopolymer content, and processing methods (i.e., batch process versus continuous microfluidics). The formation of core-shell structured micelles was demonstrated by light scattering, sedimentation velocity and electron microscopy analysis. Micellar size and aggregation number increased with decreasing the molecular weight ratio of the hydrophilic/hydrophobic block. The presence of hydrophobic p(HPMAm-Bz) homopolymer and high copolymer concentration increased micelle size, while the presence of hydrophilic p(HPMAm) homopolymer did not affect micellar size. Regarding processing conditions, it was found that the use of tetrahydrofuran and acetone as solvents for the polymers resulted in larger micelles, likely due to their relatively high water-solvent interaction parameters as compared to other solvents tested, i.e., dimethylformamide, dimethylacetamide, and dimethyl sulfoxide. Among the latter, only dimethylformamide led to micelles with a narrow polydispersity. Addition of dimethylformamide to an aqueous solvent and faster mixing of two solvents using microfluidics favored the formation of smaller micelles. In conclusion, our results show that the size of all-HPMA polymeric micelles can be easily tailored from 40 to 120 nm by varying the formulation properties and processing parameters.

Structural insights into the contactin 1 - neurofascin 155 adhesion complex.

Cell-surface expressed contactin 1 and neurofascin 155 control wiring of the nervous system and interact across cells to form and maintain paranodal myelin-axon junctions. The molecular mechanism of contactin 1 - neurofascin 155 adhesion complex formation is unresolved. Crystallographic structures of complexed and individual contactin 1 and neurofascin 155 binding regions presented here, provide a rich picture of how competing and complementary interfaces, post-translational glycosylation, splice differences and structural plasticity enable formation of diverse adhesion sites. Structural, biophysical, and cell-clustering analysis reveal how conserved Ig1-2 interfaces form competing heterophilic contactin 1 - neurofascin 155 and homophilic neurofascin 155 complexes whereas contactin 1 forms low-affinity clusters through interfaces on Ig3-6. The structures explain how the heterophilic Ig1-Ig4 horseshoe's in the contactin 1 - neurofascin 155 complex define the 7.4 nm paranodal spacing and how the remaining six domains enable bridging of distinct intercellular distances.

Simple rectangular columnar phase of goethite nanorods and its martensitic transition to the centered rectangular columnar phase.

Using high-resolution small-angle X-ray scattering, we observed a new type of the columnar phase with a simple rectangular (R(S)) structure in colloidal goethite dispersions. Furthermore, it displays a martensitic transition into the usual centered rectangular (R(C)) structure in an external magnetic field. The findings are rationalized in terms of entropic effects within a simple cell model. We interpret the results as an effect of the particle shape and the available degrees of freedom on the delicate balance between the space available for particle translations and rotations within the two structures.

Activation of Human Monocytes by Colloidal Aluminum Salts.

Subunit vaccines often contain colloidal aluminum salt-based adjuvants to activate the innate immune system. These aluminum salts consist of micrometer-sized aggregates. It is well-known that particle size affects the adjuvant effect of particulate adjuvants. In this study, the activation of human monocytes by hexagonal-shaped gibbsite (ø = 210 ± 40 nm) and rod-shaped boehmite (ø = 83 ± 827 nm) was compared with classical aluminum oxyhydroxide adjuvant (alum). To this end, human primary monocytes were cultured in the presence of alum, gibbsite, or boehmite. The transcriptome and proteome of the monocytes were investigated by using quantitative polymerase chain reaction and mass spectrometry. Human monocytic THP-1 cells were used to investigate the effect of the particles on cellular maturation, differentiation, activation, and cytokine secretion, as measured by flow cytometry and enzyme-linked immunosorbent assay. Each particle type resulted in a specific gene expression profile. IL-1ß and IL-6 secretion was significantly upregulated by boehmite and alum. Of the 7 surface markers investigated, only CD80 was significantly upregulated by alum and none by gibbsite or boehmite. Gibbsite hardly activated the monocytes. Boehmite activated human primary monocytes equally to alum, but induced a much milder stress-related response. Therefore, boehmite was identified as a promising adjuvant candidate.

Shaping Silica Rods by Tuning Hydrolysis and Condensation of Silica Precursors.

We present the synthesis of colloidal silica particles with new shapes by manipulating the growth conditions of rods that are growing from polyvinylpyrrolidone-loaded water-rich droplets containing ammonia and ethanol. The silica rods grow by ammonia-catalyzed hydrolysis and condensation of tetraethoxysilane (TEOS). The lengthwise growth of these silica rods gives us the opportunity to change the conditions at any time during the reaction. In this work, we vary the availability of hydrolyzed monomers as a function of time and study how the change in balance between the hydrolysis and condensation reactions affects a typical synthesis (as described in more detail by our group earlier1). First, we show that in a "standard" synthesis, there are two silica growth processes occurring; one in the oil phase and one in the droplet. The growth process in the water droplet causes the lengthwise growth of the rods. The growth process in the oil phase produces a thin silica layer around the rods, but also causes the nucleation of 70 nm silica spheres. During a typical rod growth, silica formation mainly takes place in the droplet. The addition of partially hydrolyzed TEOS or tetramethoxysilane (TMOS) to the growth mixture results in a change in balance between the hydrolysis and condensation reaction. As a result, the growth also starts to take place on the surface of the water droplet and thus from the oil phase, not only from inside the droplet onto a silica rod sticking out of the droplet. Carefully tuning the growth from the droplet and the growth from the oil phase allowed us to create nanospheres, hollow silica rods, hollow sphere rod systems (colloidal matchsticks), and bent silica rods.

Low pH-induced conformational change and dimerization of sortilin triggers endocytosed ligand release.

Low pH-induced ligand release and receptor recycling are important steps for endocytosis. The transmembrane protein sortilin, a ß-propeller containing endocytosis receptor, internalizes a diverse set of ligands with roles in cell differentiation and homeostasis. The molecular mechanisms of pH-mediated ligand release and sortilin recycling are unresolved. Here we present crystal structures that show the sortilin luminal segment (s-sortilin) undergoes a conformational change and dimerizes at low pH. The conformational change, within all three sortilin luminal domains, provides an altered surface and the dimers sterically shield a large interface while bringing the two s-sortilin C-termini into close proximity. Biophysical and cell-based assays show that members of two different ligand families, (pro)neurotrophins and neurotensin, preferentially bind the sortilin monomer. This indicates that sortilin dimerization and conformational change discharges ligands and triggers recycling. More generally, this work may reveal a double mechanism for low pH-induced ligand release by endocytosis receptors.

Structural basis of myelin-associated glycoprotein adhesion and signalling.

Myelin-associated glycoprotein (MAG) is a myelin-expressed cell-adhesion and bi-directional signalling molecule. MAG maintains the myelin-axon spacing by interacting with specific neuronal glycolipids (gangliosides), inhibits axon regeneration and controls myelin formation. The mechanisms underlying MAG adhesion and signalling are unresolved. We present crystal structures of the MAG full ectodomain, which reveal an extended conformation of five Ig domains and a homodimeric arrangement involving membrane-proximal domains Ig4 and Ig5. MAG-oligosaccharide complex structures and biophysical assays show how MAG engages axonal gangliosides at domain Ig1. Two post-translational modifications were identified-N-linked glycosylation at the dimerization interface and tryptophan C-mannosylation proximal to the ganglioside binding site-that appear to have regulatory functions. Structure-guided mutations and neurite outgrowth assays demonstrate MAG dimerization and carbohydrate recognition are essential for its regeneration-inhibiting properties. The combination of trans ganglioside binding and cis homodimerization explains how MAG maintains the myelin-axon spacing and provides a mechanism for MAG-mediated bi-directional signalling.

Formation and liquid permeability of dense colloidal cube packings.

The liquid permeability of dense random packings of cubic colloids with rounded corners is studied for solid hematite cubes and hollow microporous silica cubes. The permeabilities of these two types of packings are similar, confirming that the micropores in the silica shell of the hollow cubes do not contribute to the permeability. From the Brinkman screening length √k of ∼16 nm, we infer that the relevant pores are indeed intercube pores. Furthermore, we relate the permeability to the volume fraction and specific solid volume of the cubes using the Kozeny-Carman relation. The Kozeny-Carman relation contains a constant that accounts for the topology and size distribution of the pores in the medium. The constant obtained from our study with aspherical particles is of the same order of magnitude as those from studies with spherical and ellipsoidal particles, which supports the notion that the Kozeny-Carman relation is applicable for any dense particle packing with (statistically) isotropic microstructures, irrespective of the particle shape.

Tetra- versus Pentavalent Inhibitors of Cholera Toxin.

The five B-subunits (CTB5) of the Vibrio cholerae (cholera) toxin can bind to the intestinal cell surface so the entire AB5 toxin can enter the cell. Simultaneous binding can occur on more than one of the monosialotetrahexosylganglioside (GM1) units present on the cell surface. Such simultaneous binding arising from the toxins multivalency is believed to enhance its affinity. Thus, blocking the initial attachment of the toxin to the cell surface using inhibitors with GM1 subunits has the potential to stop the disease. Previously we showed that tetravalent GM1 molecules were sub-nanomolar inhibitors of CTB5. In this study, we synthesized a pentavalent version and compared the binding and potency of penta- and tetravalent cholera toxin inhibitors, based on the same scaffold, for the first time. The pentavalent geometry did not yield major benefits over the tetravalent species, but it was still a strong inhibitor, and no major steric clashes occurred when binding the toxin. Thus, systems which can adopt more geometries, such as those described here, can be equally potent, and this may possibly be due to their ability to form higher-order structures or simply due to more statistical options for binding.

Structural Insight into Multivalent Galactoside Binding to Pseudomonas aeruginosa Lectin LecA.

Multivalent galactosides inhibiting Pseudomonas aeruginosa biofilms may help control this problematic pathogen. To understand the binding mode of tetravalent glycopeptide dendrimer GalAG2 [(Gal-ß-OC6H4CO-Lys-Pro-Leu)4(Lys-Phe-Lys-Ile)2Lys-His-Ile-NH2] to its target lectin LecA, crystal structures of LecA complexes with divalent analog GalAG1 [(Gal-ß-OC6H4CO-Lys-Pro-Leu)2Lys-Phe-Lys-Ile-NH2] and related glucose-triazole linked bis-galactosides 3u3 [Gal-ß-O(CH2)n-(C2HN3)-4-Glc-ß-(C2HN3)-[ß-Glc-4-(N3HC2)]2-(CH2)n-O-ß-Gal (n = 1)] and 5u3 (n = 3) were obtained, revealing a chelate bound 3u3, cross-linked 5u3, and monovalently bound GalAG1. Nevertheless, a chelate bound model better explaining their strong LecA binding and the absence of lectin aggregation was obtained by modeling for all three ligands. A model of the chelate bound GalAG2·LecA complex was also obtained rationalizing its unusually tight LecA binding (KD = 2.5 nM) and aggregation by lectin cross-linking. The very weak biofilm inhibition with divalent LecA inhibitors suggests that lectin aggregation is necessary for biofilm inhibition by GalAG2, pointing to multivalent glycoclusters as a unique opportunity to control P. aeruginosa biofilms.

Design and self-assembly of simple coat proteins for artificial viruses.

Viruses are among the simplest biological systems and are highly effective vehicles for the delivery of genetic material into susceptible host cells. Artificial viruses can be used as model systems for providing insights into natural viruses and can be considered a testing ground for developing artificial life. Moreover, they are used in biomedical and biotechnological applications, such as targeted delivery of nucleic acids for gene therapy and as scaffolds in material science. In a natural setting, survival of viruses requires that a significant fraction of the replicated genomes be completely protected by coat proteins. Complete protection of the genome is ensured by a highly cooperative supramolecular process between the coat proteins and the nucleic acids, which is based on reversible, weak and allosteric interactions only. However, incorporating this type of supramolecular cooperativity into artificial viruses remains challenging. Here, we report a rational design for a self-assembling minimal viral coat protein based on simple polypeptide domains. Our coat protein features precise control over the cooperativity of its self-assembly with single DNA molecules to finally form rod-shaped virus-like particles. We confirm the validity of our design principles by showing that the kinetics of self-assembly of our virus-like particles follows a previous model developed for tobacco mosaic virus. We show that our virus-like particles protect DNA against enzymatic degradation and transfect cells with considerable efficiency, making them promising delivery vehicles.

Sedimentation equilibria of ferrofluids: I. Analytical centrifugation in ultrathin glass capillaries.

Analytical centrifugation is used for the first time to measure sedimentation equilibrium concentration profiles of a ferrofluid, a concentrated colloidal dispersion of strongly absorbing magnetic nanoparticles. To keep the optical absorbance from becoming too strong, the optical path length is restricted to 50 µm by placing the dispersion in a flat glass capillary. The concentration profile is kept from becoming too steep, despite the relatively high buoyant mass of the nanoparticles, by making novel use of a low-velocity analytical centrifuge that was not designed to measure equilibrium profiles. The experimental approach is validated by comparison with profiles obtained using an analytical ultracentrifuge. At concentrations of a few hundred grams per liter, the osmotic pressures calculated from the equilibrium profiles are lower than expected for hard spheres or non-interacting particles, due to magnetic dipolar interactions. By following the presented experimental approach, it will now also be possible to characterize the interparticle interactions of other strongly absorbing colloidal particles not studied before by analytical centrifugation.

Sedimentation equilibria of ferrofluids: II. Experimental osmotic equations of state of magnetite colloids.

The first experimental osmotic equation of state is reported for well-defined magnetic colloids that interact via a dipolar hard-sphere potential. The osmotic pressures are determined from the sedimentation equilibrium concentration profiles in ultrathin capillaries using a low-velocity analytical centrifuge, which is the subject of the accompanying paper I. The pressures of the magnetic colloids, measured accurately to values as low as a few pascals, obey Van 't Hoff's law at low concentrations, whereas at increasing colloid densities non-ideality appears in the form of a negative second virial coefficient. This virial coefficient corresponds to a dipolar coupling constant that agrees with the coupling constant obtained via independent magnetization measurements. The coupling constant manifests an attractive potential of mean force that is significant but yet not quite strong enough to induce dipolar chain formation. Our results disprove van der Waals-like phase behavior of dipolar particles for reasons that are explained.

Liquid crystal phase behavior of sterically-stabilized goethite.

The liquid crystalline phase behavior of sterically-stabilized goethite particles in toluene was studied using small-angle X-ray scattering. The results were compared with those from charged particles in water, with and without magnetic field: similarly rich phase behavior was found. Furthermore, the special magnetic properties were retained after coating the particles with amino-functionalized polyisobutylene chains. A remarkable difference between the aqueous and toluene samples is the latter's tendency to form gels. Smaller domains of the different liquid crystalline phases were observed and the columnar phase does not fully develop, furthermore a higher field is needed to align the full sample.