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1.
Chem Rev ; 121(10): 6173-6245, 2021 05 26.
Artículo en Inglés | MEDLINE | ID: mdl-33886302

RESUMEN

The two main strategies for enzyme engineering, directed evolution and rational design, have found widespread applications in improving the intrinsic activities of proteins. Although numerous advances have been achieved using these ground-breaking methods, the limited chemical diversity of the biopolymers, restricted to the 20 canonical amino acids, hampers creation of novel enzymes that Nature has never made thus far. To address this, much research has been devoted to expanding the protein sequence space via chemical modifications and/or incorporation of noncanonical amino acids (ncAAs). This review provides a balanced discussion and critical evaluation of the applications, recent advances, and technical breakthroughs in biocatalysis for three approaches: (i) chemical modification of cAAs, (ii) incorporation of ncAAs, and (iii) chemical modification of incorporated ncAAs. Furthermore, the applications of these approaches and the result on the functional properties and mechanistic study of the enzymes are extensively reviewed. We also discuss the design of artificial enzymes and directed evolution strategies for enzymes with ncAAs incorporated. Finally, we discuss the current challenges and future perspectives for biocatalysis using the expanded amino acid alphabet.


Asunto(s)
Aminoácidos/biosíntesis , Glucosidasas/metabolismo , Metaloproteínas/metabolismo , Aminoácidos/química , Biocatálisis , Estructura Molecular , Ingeniería de Proteínas
2.
Biotechnol Bioeng ; 118(8): 3263-3268, 2021 08.
Artículo en Inglés | MEDLINE | ID: mdl-33990942

RESUMEN

Here, we report a bienzymatic cascade to produce ß-amino acids as an intermediate for the synthesis of the leading oral antidiabetic drug, sitagliptin. A whole-cell biotransformation using recombinant Escherichia coli coexpressing a esterase and transaminase were developed, wherein the desired expression level of each enzyme was achieved by promotor engineering. The small-scale reactions (30 ml) performed under optimized conditions at varying amounts of substrate (100-300 mM) resulted in excellent conversions of 82%-95% for the desired product. Finally, a kilogram-scale enzymatic reaction (250 mM substrate, 220 L) was carried out to produce ß-amino acid (229 mM). Sitagliptin phosphate was chemically synthesized from ß-amino acids with 82% yield and > 99% purity.


Asunto(s)
Escherichia coli , Esterasas , Ingeniería Genética , Microorganismos Modificados Genéticamente , Regiones Promotoras Genéticas , Fosfato de Sitagliptina/metabolismo , Transaminasas , Escherichia coli/genética , Escherichia coli/metabolismo , Esterasas/genética , Esterasas/metabolismo , Microorganismos Modificados Genéticamente/genética , Microorganismos Modificados Genéticamente/metabolismo , Transaminasas/genética , Transaminasas/metabolismo
3.
Angew Chem Int Ed Engl ; 60(7): 3481-3486, 2021 02 15.
Artículo en Inglés | MEDLINE | ID: mdl-33140477

RESUMEN

We report a highly atom-efficient integrated cofactor/co-product recycling cascade employing cycloalkylamines as multifaceted starting materials for the synthesis of nylon building blocks. Reactions using E. coli whole cells as well as purified enzymes produced excellent conversions ranging from >80 and 95 % into desired ω-amino acids, respectively with varying substrate concentrations. The applicability of this tandem biocatalytic cascade was demonstrated to produce the corresponding lactams by employing engineered biocatalysts. For instance, ϵ-caprolactam, a valuable polymer building block was synthesized with 75 % conversion from 10 mM cyclohexylamine by employing whole-cell biocatalysts. This cascade could be an alternative for bio-based production of ω-amino acids and corresponding lactam compounds.


Asunto(s)
Aminas/metabolismo , Nylons/metabolismo , Aminas/química , Ingeniería Metabólica , Nylons/química
4.
J Ind Microbiol Biotechnol ; 45(1): 31-41, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29185080

RESUMEN

In a cell-surface display (CSD) system, successful display of a protein or peptide is highly dependent on the anchoring motif and the position of the display in that anchoring motif. In this study, a recombinant bacterial CSD system for manganese (Mn) and cobalt (Co) recovery was developed by employing OmpC as an anchoring motif on three different external loops. A portion of Cap43 protein (TRSRSHTSEG)3 was employed as a manganese and cobalt binding peptide (MCBP), which was fused with OmpC at three different external loops. The fusions were made at the loop 2 [fusion protein-2 (FP2)], loop 6 (FP6), and loop 8 (FP8) of OmpC, respectively. The efficacy of the three recombinant strains in the recovery of Mn and Co was evaluated by varying the concentration of the respective metal. Molecular modeling studies showed that the short trimeric repeats of peptide probably form a secondary structure with OmpC, thereby giving rise to a difference in metal recovery among the three recombinant strains. Among the three recombinant strains, FP6 showed increased metal recovery with both Mn and Co, at 1235.14 (1 mM) and 379.68 (0.2 mM) µmol/g dry cell weight (DCW), respectively.


Asunto(s)
Cobalto/metabolismo , Proteínas de Escherichia coli/química , Manganeso/metabolismo , Porinas/química , Técnicas de Visualización de Superficie Celular , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Péptidos/química , Péptidos/metabolismo , Porinas/genética , Estructura Secundaria de Proteína , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo
5.
Anal Biochem ; 525: 38-43, 2017 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-28245978

RESUMEN

Over the past few decades, genetically encoded fluorescent proteins have been widely used as efficient probes to explore and investigate the roles of metal ions in biological processes. The discovery of small FMN-based fluorescent proteins, such as iLOV and FbFP, has enabled researchers to exploit these fluorescent reporter proteins for metal-sensing applications. In this study, we report the inherent binding properties of iLOV towards arsenic ions. The fluorescence quenching of iLOV was linearly related to the concentration of arsenic ions, and engineered proteins showed better sensitivity than the wild-type protein. Engineering key residues around the chromophore converted the iLOV protein into a highly sensitive sensor for As3+ ions. iLOVN468S exhibited an improved binding affinity with a dissociation constant of 1.5 µM. Furthermore, the circular dichroism spectra indicated that the fluorescence quenching mechanism might be related to arsenic-protein complex formation. Thus, the reagentless sensing of arsenic can potentially be exploited to determine intracellular or environmental arsenic using a genetically encoded biosensing approach.


Asunto(s)
Arsénico/análisis , Técnicas Biosensibles/métodos , Mononucleótido de Flavina/metabolismo , Proteínas Luminiscentes/metabolismo , Dicroismo Circular , Fluorescencia , Proteínas Luminiscentes/genética , Mutación/genética
6.
Biotechnol Lett ; 39(4): 535-543, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-28004208

RESUMEN

OBJECTIVE: To enzymatically synthesize enantiomerically pure ß-amino acids from ß-keto nitriles using nitrilase and ω-transaminase. RESULTS: An enzyme cascade system was designed where in ß-keto nitriles are initially hydrolyzed to ß-keto acids using nitrilase from Bradyrhizobium japonicum and subsequently ß-keto acids were converted to ß-amino acids using ω-transaminases. Five different ω-transaminases were tested for this cascade reaction, To enhance the yields of ß-amino acids, the concentrations of nitrilase and amino donor were optimized. Using this enzymatic reaction, enantiomerically pure (S)-ß-amino acids (ee > 99%) were generated. As nitrilase is the bottleneck in this reaction, molecular docking analysis was carried out to depict the poor affinity of nitrilase towards ß-keto acids. CONCLUSIONS: A novel enzymatic route to generate enantiomerically pure aromatic (S)-ß-amino acids from ß-keto nitriles is demonstrated for the first time.


Asunto(s)
Aminoácidos/metabolismo , Aminohidrolasas/metabolismo , Nitrilos/metabolismo , Transaminasas/metabolismo , Proteínas Bacterianas/metabolismo , Biotransformación , Bradyrhizobium/enzimología , Pruebas de Enzimas , Escherichia coli , Hidrólisis , Simulación del Acoplamiento Molecular , Estereoisomerismo
7.
Microb Cell Fact ; 15(1): 125, 2016 Jul 18.
Artículo en Inglés | MEDLINE | ID: mdl-27431996

RESUMEN

Cytochrome P450 (CYP) monooxygenases, the nature's most versatile biological catalysts have unique ability to catalyse regio-, chemo-, and stereospecific oxidation of a wide range of substrates under mild reaction conditions, thereby addressing a significant challenge in chemocatalysis. Though CYP enzymes are ubiquitous in all biological kingdoms, the divergence of CYPs in fungal kingdom is manifold. The CYP enzymes play pivotal roles in various fungal metabolisms starting from housekeeping biochemical reactions, detoxification of chemicals, and adaptation to hostile surroundings. Considering the versatile catalytic potentials, fungal CYPs has gained wide range of attraction among researchers and various remarkable strategies have been accomplished to enhance their biocatalytic properties. Numerous fungal CYPs with multispecialty features have been identified and the number of characterized fungal CYPs is constantly increasing. Literature reveals ample reviews on mammalian, plant and bacterial CYPs, however, modest reports on fungal CYPs urges a comprehensive review highlighting their novel catalytic potentials and functional significances. In this review, we focus on the diversification and functional diversity of fungal CYPs and recapitulate their unique and versatile biocatalytic properties. As such, this review emphasizes the crucial issues of fungal CYP systems, and the factors influencing efficient biocatalysis.


Asunto(s)
Sistema Enzimático del Citocromo P-450/química , Sistema Enzimático del Citocromo P-450/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Hongos/enzimología , Biocatálisis , Sistema Enzimático del Citocromo P-450/genética , Proteínas Fúngicas/genética , Hongos/química , Hongos/genética
8.
Appl Microbiol Biotechnol ; 100(24): 10375-10384, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27344594

RESUMEN

Bacterial cytochrome P450 enzymes in cytochrome P450 (CYP)153 family were recently reported as fatty acid ω-hydroxylase. Among them, CYP153As from Marinobacter aquaeolei VT8 (CYP153A33), Alcanivorax borkumensis SK2 (CYP153A13), and Gordonia alkanivorans (CYP153A35) were selected, and their specific activities and product yields of ω-hydroxy palmitic acid based on whole cell reactions toward palmitic acid were compared. Using CamAB as redox partner, CYP153A35 and CYP153A13 showed the highest product yields of ω-hydroxy palmitic acid in whole cell and in vitro reactions, respectively. Artificial self-sufficient CYP153A35-BMR was constructed by fusing it to the reductase domain of CYP102A1 (i.e., BM3) from Bacillus megaterium, and its catalytic activity was compared with CYP153A35 and CamAB systems. Unexpectedly, the system with CamAB resulted in a 1.5-fold higher yield of ω-hydroxy palmitic acid than that using A35-BMR in whole cell reactions, whereas the electron coupling efficiency of CYP153A35-BM3 reductase was 4-fold higher than that of CYP153A35 and CamAB system. Furthermore, various CamAB expression systems according to gene arrangements of the three proteins and promoter strength in their gene expression were compared in terms of product yields and productivities. Tricistronic expression of the three proteins in the order of putidaredoxin (CamB), CYP153A35, and putidaredoxin reductase (CamA), i.e., A35-AB2, showed the highest product yield from 5 mM palmitic acid for 9 h in batch reaction owing to the concentration of CamB, which is the rate-limiting factor for the activity of CYP153A35. However, in fed-batch reaction, A35-AB1, which expressed the three proteins individually using three T7 promoters, resulted with the highest product yield of 17.0 mM (4.6 g/L) ω-hydroxy palmitic acid from 20 mM (5.1 g/L) palmitic acid for 30 h.


Asunto(s)
Alcanivoraceae/enzimología , Sistema Enzimático del Citocromo P-450/metabolismo , Bacteria Gordonia/enzimología , Marinobacter/enzimología , Ácidos Palmíticos/metabolismo , Sistema Enzimático del Citocromo P-450/genética , Transporte de Electrón , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
9.
Microb Cell Fact ; 14: 45, 2015 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-25880760

RESUMEN

BACKGROUND: Omega hydroxy fatty acids (ω-OHFAs) are multifunctional compounds that act as the basis for the production of various industrial products with broad commercial and pharmaceutical implications. However, the terminal oxygenation of saturated or unsaturated fatty acids for the synthesis of ω-OHFAs is intricate to accomplish through chemocatalysis, due to the selectivity and controlled reactivity in C-H oxygenation reactions. Cytochrome P450, the ubiquitous enzyme is capable of catalyzing the selective terminal omega hydroxylation naturally in biological kingdom. RESULTS: To gain a deep insight on the biochemical role of fungal P450s towards the production of omega hydroxy fatty acids, two cytochrome P450 monooxygenases from Fusarium oxysporum (FoCYP), FoCYP539A7 and FoCYP655C2; were identified, cloned, and heterologously expressed in Saccharomyces cerevisiae. For the efficient production of ω-OHFAs, the S. cerevisiae was engineered to disrupt the acyl-CoA oxidase enzyme and the ß-oxidation pathway inactivated (ΔPox1) S. cerevisiae mutant was generated. To elucidate the significance of the interaction of redox mechanism, FoCYPs were reconstituted with the heterologous and homologous reductase systems--S. cerevisiae CPR (ScCPR) and F. oxysporum CPR (FoCPR). To further improve the yield, the effect of pH was analyzed and the homologous FoCYP-FoCPR system efficiently hydroxylated caprylic acid, capric acid and lauric acid into their respective ω-hydroxy fatty acids with 56%, 79% and 67% conversion. Furthermore, based on computational simulations, we identified the key residues (Asn106 of FoCYP539A7 and Arg235 of FoCYP655C2) responsible for the recognition of fatty acids and demonstrated the structural insights of the active site of FoCYPs. CONCLUSION: Fungal CYP monooxygenases, FoCYP539A7 and FoCYP655C2 with its homologous redox partner, FoCPR constitutes a promising catalyst due to its high regio- and stereo-selectivity in the hydroxylation of fatty acids and in the substantial production of industrially valuable ω-hydroxy fatty acids.


Asunto(s)
Sistema Enzimático del Citocromo P-450/metabolismo , Ácidos Grasos/biosíntesis , Proteínas Fúngicas/metabolismo , Fusarium/enzimología , Ingeniería Metabólica/métodos , Saccharomyces cerevisiae/metabolismo , Acil-CoA Oxidasa/genética , Acil-CoA Oxidasa/metabolismo , Secuencia de Aminoácidos , Arginina/genética , Arginina/metabolismo , Asparagina/genética , Asparagina/metabolismo , Dominio Catalítico/genética , Sistema Enzimático del Citocromo P-450/clasificación , Sistema Enzimático del Citocromo P-450/genética , Proteínas Fúngicas/genética , Fusarium/genética , Concentración de Iones de Hidrógeno , Hidroxilación , Microbiología Industrial/métodos , Isoenzimas/clasificación , Isoenzimas/genética , Isoenzimas/metabolismo , Ácidos Láuricos/metabolismo , Datos de Secuencia Molecular , Mutación , Filogenia , Reproducibilidad de los Resultados , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Homología de Secuencia de Aminoácido
10.
Bioprocess Biosyst Eng ; 38(11): 2077-84, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26219270

RESUMEN

For the construction of an efficient copper waste treatment system, a cell surface display strategy was employed. The copper adsorption ability of recombinant bacterial strains displaying three different copper binding peptides were evaluated in LB Luria-Bertani medium (LB), artificial wastewater, and copper phthalocyanine containing textile dye industry wastewater samples. Structural characteristics of the three peptides were also analyzed by similarity-based structure modeling. The best binding peptide was chosen for the construction of a dimeric peptide display and the adsorption ability of the monomeric and dimeric peptide displayed strains were compared. The dimeric peptide displayed strain showed superior copper adsorption in all three tested conditions (LB, artificial wastewater, and textile dye industry wastewater). When the strains were exposed to copper phthalocyanine dye polluted wastewater, the dimeric peptide display [543.27 µmol/g DCW dry cell weight (DCW)] showed higher adsorption of copper when compared with the monomeric strains (243.53 µmol/g DCW).


Asunto(s)
Cobre/química , Escherichia coli , Biblioteca de Péptidos , Aguas Residuales/química , Contaminantes Químicos del Agua/química , Purificación del Agua/métodos , Adsorción
11.
Biotechnol Bioprocess Eng ; 20(1): 67-72, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-32218680

RESUMEN

Genetically encoded fluorescent proteins are extensively utilized for labeling and imaging proteins, organelles, cell tissues, and whole organisms. In this study, we explored the feasibility of mRFP1 and its variants for measuring intracellular temperature. A linear relationship was observed between the temperature and fluorescence intensity of mRFP1 and its variants. Temperature sensitivities of E. coli expressing mRFP1, mRFP-P63A and mRFP-P63A[(4R)-FP] were -1.27%, -1.26% and -0.77%/°C, respectively. Finally, we demonstrated the potentiality of mRFP1 and its variants as an in vivo temperature sensor.

12.
Appl Microbiol Biotechnol ; 98(19): 8191-200, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24752838

RESUMEN

Daidzein C6 hydroxylase (6-DH, nfa12130), which is a class I type of cytochrome P450 enzyme, catalyzes a hydroxylation reaction at the C6-position of the daidzein A-ring and requires auxiliary electron transfer proteins. Current utilization of cytochrome P450 (CYP) enzymes is limited by low coupling efficiency, which necessitates extramolecular electron transfers, and low driving forces, which derive electron flows from tightly regulated NADPH redox balances into the heterogeneous CYP catalytic cycle. To overcome such limitations, the heme domain of the 6-DH enzyme was genetically fused with the NADPH-reductase domain of self-sufficient CYP102D1 to enhance electron transfer efficiencies through intramolecular electron transfer and switching cofactor preference from NADH into NADPH. 6-DH-reductase fusion enzyme displayed distinct spectral properties of both flavoprotein and heme proteins and catalyzed daidzein hydroxylation more efficiently with a k cat/K m value of 120.3 ± 11.5 [10(3) M(-1) s(-1)], which was about three times higher than that of the 6-DH-FdxC-FdrA reconstituted system. Moreover, to obtain a higher redox driving force, a Streptomyces avermitilis host system was developed for heterologous expression of fusion 6-DH enzyme and whole cell biotransformation of daidzein. The whole cell reaction using the final recombinant strain, S. avermitilisΔcyp105D7::fusion 6-DH (nfa12130), resulted in 8.3 ± 1.4 % of 6-OHD yield from 25.4 mg/L of daidzein.


Asunto(s)
Proteínas Bacterianas/genética , Isoflavonas/metabolismo , Ingeniería Metabólica , Oxigenasas de Función Mixta/genética , NADPH-Ferrihemoproteína Reductasa/metabolismo , Nocardia/enzimología , Streptomyces/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Biotransformación , Cinética , Oxigenasas de Función Mixta/química , Oxigenasas de Función Mixta/metabolismo , NADPH-Ferrihemoproteína Reductasa/química , NADPH-Ferrihemoproteína Reductasa/genética , Nocardia/genética , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Streptomyces/genética
13.
Angew Chem Int Ed Engl ; 53(49): 13360-4, 2014 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-25195781

RESUMEN

Misaminoacylation of 3,4-dihydroxyphenylalanine (Dopa) molecules to tRNA(Tyr) by endogenous tyrosyl-tRNA synthetase allowed the quantitative replacement of tyrosine residues with a yield of over 90 % by an in vivo residue-specific incorporation strategy, to create, for the first time, engineered mussel adhesive proteins (MAPs) in Escherichia coli with a very high Dopa content, close to that of natural MAPs. The Dopa-incorporated MAPs exhibited a superior surface adhesion and water resistance ability by assistance of Dopa-mediated interactions including the oxidative Dopa cross-linking, and furthermore, showed underwater adhesive properties comparable to those of natural MAPs. These results propose promising use of Dopa-incorporated engineered MAPs as bioglues or adhesive hydrogels for practical underwater applications.


Asunto(s)
Bivalvos/química , Dihidroxifenilalanina/química , Ingeniería de Proteínas/métodos , Proteínas/química , Adhesividad , Secuencia de Aminoácidos , Animales , Biomimética , Bivalvos/genética , Dihidroxifenilalanina/genética , Escherichia coli/genética , Datos de Secuencia Molecular , Proteínas/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Agua/química
14.
Methods Mol Biol ; 2844: 197-209, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39068341

RESUMEN

The promoter is an essential component of an expression system since it regulates the transcriptional beginning of related genes. The optimal expression level can be achieved by employing a promoter engineering approach. Typically, creating a library of T7 promoters allows for titratable protein expression. In the process of making ß-amino acid (sitagliptin intermediate) from ß-keto ester, esterase from Pseudomonas stutzeri (Est PS) is used to convert the ß-keto ester to ß-keto acid. Subsequently, transaminase from Ilumatobacter coccineus (TAIC) transforms the ß-keto acid to its corresponding ß-amino acid. Here, we describe the optimization of the expression levels of Est PS for the maximum production of sitagliptin intermediate. The different promoter strengths for Est PS were built into the T7 promoters of the pET15b vector. With the help of these new co-expressing entire cells, the expressed enzyme ratio for each enzyme was determined. As the strength of the promoter of Est PS decreases, the expression level also decreases (from 100% to 10%). Conversely, the TAIC expression level is increased. This developed system produced a higher sitagliptin intermediate than enzymes' unoptimized expression level.


Asunto(s)
Regiones Promotoras Genéticas , Fosfato de Sitagliptina , Esterasas/genética , Esterasas/metabolismo , Pseudomonas stutzeri/genética , Pseudomonas stutzeri/metabolismo , Transaminasas/genética , Transaminasas/metabolismo , Vectores Genéticos/genética , Expresión Génica , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
15.
ACS Synth Biol ; 13(7): 2188-2198, 2024 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-38912892

RESUMEN

Metabolically engineered microbial consortia can contribute as a promising production platform for the supply of polyamide monomers. To date, the biosynthesis of long-chain α,ω-diamines from n-alkanes is challenging because of the inert nature of n-alkanes and the complexity of the overall synthesis pathway. We combined an engineered Yarrowia lipolytica module with Escherichia coli modules to obtain a mixed strain microbial consortium that could catalyze an efficient biotransformation of n-alkanes into corresponding α,ω-diamines. The engineered Y. lipolytica strain was constructed (YALI10) wherein the two genes responsible for ß-oxidation and the five genes responsible for the overoxidation of fatty aldehydes were deleted. This newly constructed YALI10 strain expressing transaminase (TA) could produce 0.2 mM 1,12-dodecanediamine (40.1 mg/L) from 10 mM n-dodecane. The microbial consortia comprising engineered Y. lipolytica strains for the oxidation of n-alkanes (OM) and an E. coli amination module (AM) expressing an aldehyde reductase (AHR) and transaminase (TA) improved the production of 1,12-diamine up to 1.95 mM (391 mg/L) from 10 mM n-dodecane. Finally, combining the E. coli reduction module (RM) expressing a carboxylic acid reductase (CAR) and an sfp phosphopantetheinyl transferase with OM and AM further improved the production of 1,12-diamine by catalyzing the reduction of undesired 1,12-diacids into 1,12-diols, which further undergo amination to give 1,12-diamine as the target product. This newly constructed mixed strain consortium comprising three modules in one pot gave 4.1 mM (41%; 816 mg/L) 1,12-diaminododecane from 10 mM n-dodecane. The whole-cell consortia reported herein present an elegant "greener" alternative for the biosynthesis of various α,ω-diamines (C8, C10, C12, and C14) from corresponding n-alkanes.


Asunto(s)
Alcanos , Biocatálisis , Diaminas , Escherichia coli , Ingeniería Metabólica , Yarrowia , Yarrowia/metabolismo , Yarrowia/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Alcanos/metabolismo , Ingeniería Metabólica/métodos , Diaminas/metabolismo , Transaminasas/metabolismo , Transaminasas/genética , Oxidación-Reducción , Consorcios Microbianos/genética
16.
Nat Commun ; 15(1): 6371, 2024 Jul 29.
Artículo en Inglés | MEDLINE | ID: mdl-39075048

RESUMEN

Biobased furans have emerged as chemical building blocks for the development of materials because of their diverse scaffolds and as they can be directly prepared from sugars. However, selective, efficient, and cost-effective scalable conversion of biobased furans remains elusive. Here, we report a robust transaminase (TA) from Shimia marina (SMTA) that enables the scalable amination of biobased furanaldehydes with high activity and broad substrate specificity. Crystallographic and mutagenesis analyses provide mechanistic insights and a structural basis for understanding SMTA, which enables a higher substrate conversion. The enzymatic cascade process established in this study allows one-pot synthesis of 2,5-bis(aminomethyl)furan (BAMF) and 5-(aminomethyl)furan-2-carboxylic acid from 5-hydroxymethylfurfural. The biosynthesis of various furfurylamines, including a one-pot cascade reaction for BAMF generation using whole cells, demonstrates their practical application in the pharmaceutical and polymer industries.


Asunto(s)
Biocatálisis , Furanos , Transaminasas , Furanos/química , Furanos/metabolismo , Transaminasas/metabolismo , Transaminasas/genética , Transaminasas/química , Especificidad por Sustrato , Furaldehído/análogos & derivados , Furaldehído/metabolismo , Furaldehído/química , Aminación , Aminas/química , Aminas/metabolismo , Cristalografía por Rayos X
17.
Biochem Biophys Res Commun ; 440(4): 509-14, 2013 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-24080380

RESUMEN

Here we enhanced the stability and biophysical properties of mRFP1 through a combination of canonical and non-canonical amino acid mutagenesis. The global replacement of proline residue with (2S, 4R)-4-fluoroproline [(4R)-FP] into mRFP1 led to soluble protein but lost its fluorescence, whereas (2S, 4S)-4-fluoroproline [(4S)-FP] incorporation resulted in insoluble protein. The bioinformatics analysis revealed that (4R)-FP incorporation at Pro63 caused fluorescence loss due to the steric hindrance of fluorine atom of (4R)-FP with the chromophore. Therefore, Pro63 residue was mutated with the smallest amino acid Ala to maintain non coplanar conformation of the chromophore and helps to retain its fluorescence with (4R)-FP incorporation. The incorporation of (4R)-FP into mRFP1-P63A showed about 2-3-fold enhancement in thermal and chemical stability. The rate of maturation is also greatly accelerated over the presence of (4R)-FP into mRFP1-P63A. Our study showed that a successful enhancement in the biophysical property of mRFP1-P63A[(4R)-FP] using non-canonical amino acid mutagenesis after mutating non-permissive site Pro63 into Ala.


Asunto(s)
Fluorescencia , Proteínas Luminiscentes/química , Prolina/análogos & derivados , Fenómenos Biofísicos , Calor , Proteínas Luminiscentes/genética , Mutagénesis , Prolina/química , Prolina/genética , Estabilidad Proteica , Proteína Fluorescente Roja
18.
Chembiochem ; 14(10): 1231-8, 2013 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-23780920

RESUMEN

A current challenge in high-throughput screening (HTS) of hydroxylation reactions by P450 is a fast and sensitive assay for regioselective hydroxylation against millions of mutants. We have developed a solid-agar plate-based HTS assay for screening ortho-specific hydroxylation of daidzein by sensing formaldehyde generated from the O-dealkylation reaction. This method adopts a colorimetric dye, pararosaniline, which has previously been used as an aldehyde-specific probe within cells. The rationale for this method lies in the fact that the hydroxylation activity at ortho-carbon position to COH correlates with a linear relationship to O-dealkylation activity on chemically introduced methoxy group at the corresponding COH. As a model system, a 4',7-dihydroxyisoflavone (daidzein) hydroxylase (CYP102D1 F96V/M246I), which catalyzes hydroxylation at ortho positions of the daidzein A/B-ring, was examined for O-dealklyation activity, by using permethylated daidzein as a surrogate substrate. By using the developed indirect bishydroxylation screening assay, the correlation coefficient between O-dealkylation and bishydroxylation activity for the template enzyme was 0.72. For further application of this assay, saturation mutants at A273/G274/T277 were examined by mutant screening with a permethylated daidzein analogue substrate (A-ring inactivated in order to find enhanced 3'-regioselectiviy). The whole-cell biotransformation of daidzein by final screened mutant G1 (A273H/G274E/T277G) showed fourfold increased conversion yield, with 14.3 mg L(-1) production titer and greatly increased 3'-regioselectiviy (3'/6=11.8). These results show that there is a remarkably high correlation (both in vitro and in vivo), thus suggesting that this assay would be ideal for a primary HTS assay for P450 reactions.


Asunto(s)
Colorimetría/métodos , Sistema Enzimático del Citocromo P-450/genética , Sistema Enzimático del Citocromo P-450/metabolismo , Ensayos Analíticos de Alto Rendimiento/métodos , Catálisis , Sistema Enzimático del Citocromo P-450/química , Remoción de Radical Alquila , Hidroxilación , Oxidación-Reducción , Especificidad por Sustrato
19.
Appl Microbiol Biotechnol ; 97(4): 1501-11, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23081771

RESUMEN

Phenolic acid decarboxylase (PAD) catalyzes the non-oxidative decarboxylation of p-coumaric acid (pCA) to p-hydroxystyrene (pHS). PAD from Bacillus amyloliquefaciens (BAPAD), which showed k (cat)/K (m) value for pCA (9.3 × 10³ mM⁻¹ s⁻¹), was found as the most active one using the "Subgrouping Automata" program and by comparing enzyme activity. However, the production of pHS of recombinant Escherichia coli harboring BAPAD showed only a 22.7 % conversion yield due to product inhibition. Based on the partition coefficient of pHS and biocompatibility of the cell, 1-octanol was selected for the biphasic reaction. The conversion yield increased up to 98.0 % and 0.83 g/h/g DCW productivity was achieved at 100 mM pCA using equal volume of 1-octanol as an organic solvent. In the optimized biphasic reactor, using a three volume ratio of 1-octanol to phosphate buffer phase (50 mM, pH 7.0), the recombinant E. coli produced pHS with a 88.7 % conversion yield and 1.34 g/h/g DCW productivity at 300 mM pCA.


Asunto(s)
Bacillus/enzimología , Proteínas Bacterianas/metabolismo , Carboxiliasas/metabolismo , Ácidos Cumáricos/metabolismo , Estirenos/metabolismo , Bacillus/química , Bacillus/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Biocatálisis , Biotransformación , Carboxiliasas/química , Carboxiliasas/genética , Ácidos Cumáricos/química , Cinética , Estirenos/química
20.
Front Bioeng Biotechnol ; 11: 1280464, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38033815

RESUMEN

The U.S. Department of Energy has listed levulinic acid (LA) as one of the top 12 compounds derived from biomass. LA has gained much attention owing to its conversion into enantiopure 4-aminopentanoic acid through an amination reaction. Herein, we developed a coupled-enzyme recyclable cascade employing two transaminases (TAs) for the synthesis of (S)-4-aminopentanoic acid. TAs were first utilized to convert LA into (S)-4-aminopentanoic acid using (S)-α-Methylbenzylamine [(S)-α-MBA] as an amino donor. The deaminated (S)-α-MBA i.e., acetophenone was recycled back using a second TAs while using isopropyl amine (IPA) amino donor to generate easily removable acetone. Enzymatic reactions were carried out using different systems, with conversions ranging from 30% to 80%. Furthermore, the hybrid nanoflowers (HNF) of the fusion protein were constructed which afforded complete biocatalytic conversion of LA to the desired (S)-4-aminopentanoic acid. The created HNF demonstrated storage stability for over a month and can be reused for up to 7 sequential cycles. A preparative scale reaction (100 mL) achieved the complete conversion with an isolated yield of 62%. Furthermore, the applicability of this recycling system was tested with different ß-keto ester substrates, wherein 18%-48% of corresponding ß-amino acids were synthesized. Finally, this recycling system was applied for the biosynthesis of pharmaceutical important drug sitagliptin intermediate ((R)-3-amino-4-(2,4,5-triflurophenyl) butanoic acid) with an excellent conversion 82%.

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