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1.
Mol Phylogenet Evol ; 201: 108215, 2024 Oct 11.
Artículo en Inglés | MEDLINE | ID: mdl-39396561

RESUMEN

With 90 recognized species, kukri snakes in the genus Oligodon Fitzinger constitute the second largest snake radiation in the world. Oligodon species are collectively distributed across the Asian continent and possess several ecological and morphological attributes that are unique amongst other snakes. Despite their high levels of species richness, evolutionary relationships within Oligodon are poorly understood due to a limited number of samples and genetic markers available in earlier phylogenies. In this study, we assembled the largest molecular dataset of Oligodon to date, which we use to assess the systematics and biogeography of the entire genus. Based on a combination of maximum likelihood and Bayesian phylogenies using fragments of three mitochondrial genes (12 s, 16 s, CytB) and three nuclear genes (Rag1, C-mos, BDNF), we identify eight deeply divergent clades within Oligodon, of which only two correspond with species groupings that were recognized by previous morphological classifications. Four species delimitation methods employed on the mitochondrial portion of the dataset resulted in dramatically divergent estimations of molecular operational taxonomic units (mOTUs). When combined, all four methods support the existence of unrecognized species-level lineages, but also indicate that several other Oligodon species are poorly differentiated genetically and require additional integrative taxonomic research to properly resolve. Based on divergence dating, we demonstrate that Oligodon began to diversify during the early Neogene and hypothesize that the most recent common ancestor of the genus originated in mainland Southeast Asia. We conclude by recognizing eight phylogenetically defined species groups and identify sampling gaps that require further investigation once new data becomes available. This study contributes to a greater understanding of snake evolution on the Asian continent and acts as a baseline for future studies of this speciose genus.

2.
Zootaxa ; 5306(5): 537-550, 2023 Jun 23.
Artículo en Inglés | MEDLINE | ID: mdl-37518669

RESUMEN

An integrative taxonomic analysis delimits and diagnoses the new species Hemiphyllodactylus cattien sp. nov. from Cat Tien National Park, Dong Nai Province, southern Vietnam-the eighth species of Hemiphyllodactylus to be described from Vietnam. The new species is recovered as the sister species to a clade comprised of H. indosobrinus from Laos and H. flaviventris from Thailand based on phylogenetic analyses using ND2 mtDNA gene sequences. Unlike the vast majority of Hemiphyllodactylus which are site-restricted upland endemics, Hemiphyllodactylus cattien sp. nov. is a lowland species collected from one of the most well-surveyed regions in Vietnam. Its discovery further emphasizes the need for continued re-sampling of survey sites already considered to be well-explored.


Asunto(s)
Bosques , Lagartos , Animales , Filogenia , Vietnam
3.
PeerJ ; 11: e15185, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37220522

RESUMEN

The kukri snakes of the genus Oligodon Fitzinger, 1826 reach the westernmost limits of their distribution in Middle and Southwest Asia (Afghanistan, Iran, and Turkmenistan), and the Palearctic portions of Pakistan. In this article, we review the systematics and distribution of the two species native to this region, Oligodon arnensis (Shaw, 1802) and Oligodon taeniolatus (Jerdon, 1853) based on an integrative approach combining morphological, molecular, and species distribution modeling (SDM) data. Phylogenetic analyses recover O. taeniolatus populations from Iran and Turkmenistan in a clade with the O. arnensis species complex, rendering the former species paraphyletic relative to O. taeniolatus sensu stricto on the Indian subcontinent. To correct this, we resurrect the name Contia transcaspica Nikolsky, 1902 from the synonymy of O. taeniolatus and assign it to populations in Middle-Southwest Asia. So far, Oligodon transcaspicus comb. et stat. nov. is known only from the Köpet-Dag Mountain Range of northeast Iran and southern Turkmenistan, but SDM mapping suggests it may have a wider range. Genetic samples of O. "arnensis" from northern Pakistan are nested in a clade sister to the recently described Oligodon churahensis Mirza, Bhardwaj & Patel, 2021, and are phylogenetically separate from O. arnensis sensu stricto in south India and Sri Lanka. Based on morphological similarity, the Afghanistan and Pakistan populations are assigned to Oligodon russelius (Daudin, 1803) and we synonymize O. churahensis with this species. Our investigation leads us to remove O. taeniolatus from the snake fauna of Afghanistan, Iran, and Turkmenistan, with the consequence that only Oligodon transcaspicus comb. et stat. nov. and O. russelius are present in these countries. Additional studies are needed to resolve the taxonomy of the O. taeniolatus and O. arnensis species complexes on the Indian subcontinent, and an updated key for both groups is provided.


Asunto(s)
Cheirogaleidae , Colubridae , Lagartos , Animales , Filogenia , Irán , Afganistán
4.
PeerJ ; 10: e12713, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35047234

RESUMEN

Slug-eating snakes of the subfamily Pareinae are an insufficiently studied group of snakes specialized in feeding on terrestrial mollusks. Currently Pareinae encompass three genera with 34 species distributed across the Oriental biogeographic region. Despite the recent significant progress in understanding of Pareinae diversity, the subfamily remains taxonomically challenging. Here we present an updated phylogeny of the subfamily with a comprehensive taxon sampling including 30 currently recognized Pareinae species and several previously unknown candidate species and lineages. Phylogenetic analyses of mtDNA and nuDNA data supported the monophyly of the three genera Asthenodipsas, Aplopeltura, and Pareas. Within both Asthenodipsas and Pareas our analyses recovered deep differentiation with each genus being represented by two morphologically diagnosable clades, which we treat as subgenera. We further apply an integrative taxonomic approach, including analyses of molecular and morphological data, along with examination of available type materials, to address the longstanding taxonomic questions of the subgenus Pareas, and reveal the high level of hidden diversity of these snakes in Indochina. We restrict the distribution of P. carinatus to southern Southeast Asia, and recognize two subspecies within it, including one new subspecies proposed for the populations from Thailand and Myanmar. We further revalidate P. berdmorei, synonymize P. menglaensis with P. berdmorei, and recognize three subspecies within this taxon, including the new subspecies erected for the populations from Laos and Vietnam. Furthermore, we describe two new species of Pareas from Vietnam: one belonging to the P. carinatus group from southern Vietnam, and a new member of the P. nuchalis group from the central Vietnam. We provide new data on P. temporalis, and report on a significant range extension for P. nuchalis. Our phylogeny, along with molecular clock and ancestral area analyses, reveal a complex diversification pattern of Pareinae involving a high degree of sympatry of widespread and endemic species. Our analyses support the "upstream" colonization hypothesis and, thus, the Pareinae appears to have originated in Sundaland during the middle Eocene and then colonized mainland Asia in early Oligocene. Sundaland and Eastern Indochina appear to have played the key roles as the centers of Pareinae diversification. Our results reveal that both vicariance and dispersal are responsible for current distribution patterns of Pareinae, with tectonic movements, orogeny and paleoclimatic shifts being the probable drivers of diversification. Our study brings the total number of Pareidae species to 41 and further highlights the importance of comprehensive taxonomic revisions not only for the better understanding of biodiversity and its evolution, but also for the elaboration of adequate conservation actions.


Asunto(s)
Lagartos , Serpientes , Animales , Filogenia , Indochina , Asia Sudoriental , Serpientes/genética , Lagartos/genética , Tailandia
5.
Zootaxa ; 4816(2): zootaxa.4816.2.2, 2020 Jul 16.
Artículo en Inglés | MEDLINE | ID: mdl-33055702

RESUMEN

An integrative taxonomic analysis of newly discovered populations of Hemiphyllodactylus from Indochina recovered a new species from Peninsular Thailand and two others from Laos. The new Thai species, Hemiphyllodactylus pardalis sp. nov. described herein, is the sister species to all other species in the newly designated Indochina clade and has a unique spotted contrasting dorsal pattern not seen in any other species of Hemiphyllodactylus. This, along with its elongate and gracile body morphology, renders it remarkably convergent on the Philippine gecko Pseudogekko smaragdinus despite the fact it is deeply nested within Hemiphyllodactylus. The description of this new species underscores the depauperate nature of Hemiphyllodactylus diversity throughout Indochina in general and Thailand in particular compared to neighboring upland areas of Myanmar and Peninsular Malaysia. This especially underscores the need for continued herpetofaunal field surveys in montane areas of western Thailand.


Asunto(s)
Ecosistema , Lagartos , Animales , Filipinas , Filogenia , Tailandia
6.
Zootaxa ; 4852(5): zootaxa.4852.5.3, 2020 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-33056395

RESUMEN

An integrative taxonomic analysis recovered the new species Cnemaspis selenolagus sp. nov. of the C. siamensis group as the sister species to C. punctatonuchalis. The new species was discovered in mountain evergreen tropical forests of in Suan Phueng District of Ratchaburi Province, western Thailand. Additionally, the analysis recovered a deep genetic divergence between northern and southern clades within the C. siamensis group that occur on opposite sides of the Isthmus of Kra-a well-known biogeographic region of cladogenic turnover. The description of C. selenolagus sp. nov. brings the total number of species of Cnemaspis in Thailand to 16, 11 of which compose the C. siamensis group-a lineage endemic to the Thai-Malay Peninsula. This underscores the physiographic complexity of this narrow peninsula in that it can support a large number of closely related species in only the northern two-thirds of its length.


Asunto(s)
Ecosistema , Lagartos , Animales , Bosques , Tailandia
7.
PeerJ ; 8: e8332, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-31934510

RESUMEN

We describe a new species of Oligodon from the highlands of the Langbian Plateau, southern Truong Son Mountains, Vietnam, based on morphological and molecular phylogenetic analyses. The new species, Oligodon rostralis sp. nov is distinguished from its congeners by the following morphological characters: medium size in adults (male TL = 582 mm); small and broad head with long protruding snout; dorsal scale row formula 15-15-13; 167 ventrals, 47 subcaudals; single preocular, single postocular; loreal and presubocular absent; six supralabials, third and fourth entering orbit; six infralabials, anterior four contacting first pair of chin shields; internasals separate from prefrontals; nasal divided; single anterior and two posterior temporals; cloacal plate undivided; hemipenes short, bilobed, bifurcating in anterior one third of their length, extending to 8th subcaudal, lacking spines and papillae, with a prominent transverse flounces and distal calyces; six maxillary teeth, the posterior three enlarged; dorsal pattern consisting of 14+4 large dark-brown blotches and a bright-orange vertebral stripe on tail and dorsum; and ventral surfaces in life cream laterally with dark quadrangular spots; dark temporal streak present, edged with white. We also provide additional information on O. annamensis, including a morphological dataset of all specimens known from natural history collections and confirmation of an earlier record of O. annamensis from Cambodia. We also provide the first record of O. annamensis for Dak Lak Province. Phylogenetic analyses of mtDNA genes (3,131 bp of 12S rRNA, 16S rRNA and cyt b) suggest sister relationships of Oligodon rostralis sp. nov. and O. annamensis and place them in one clade with the O. cyclurus and O. taeniatus species groups, which is concordant with previous studies on the phylogenetic relationships of Oligodon. Our study demonstrates high level of herpetofaunal diversity and endemism of Langbian Plateau and further supports the importance of this area for conservation herpetofaunal diversity in Indochina.

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