Comprehensive machine learning-based preoperative blood features predict the prognosis for ovarian cancer.

PURPOSE: Significant advancements in improving ovarian cancer (OC) outcomes have been limited over the past decade. To predict prognosis and improve outcomes of OC, we plan to develop and validate a robust prognosis signature based on blood features. METHODS: We screened age and 33 blood features from 331 OC patients. Using ten machine learning algorithms, 88 combinations were generated, from which one was selected to construct a blood risk score (BRS) according to the highest C-index in the test dataset. RESULTS: Stepcox (both) and Enet (alpha = 0.7) performed the best in the test dataset with a C-index of 0.711. Meanwhile, the low RBS group possessed observably prolonged survival in this model. Compared to traditional prognostic-related features such as age, stage, grade, and CA125, our combined model had the highest AUC values at 3, 5, and 7 years. According to the results of the model, BRS can provide accurate predictions of OC prognosis. BRS was also capable of identifying various prognostic stratifications in different stages and grades. Importantly, developing the nomogram may improve performance by combining BRS and stage. CONCLUSION: This study provides a valuable combined machine-learning model that can be used for predicting the individualized prognosis of OC patients.

A Piezoelectric-Piezoresistive Coupling Electric Field Sensor for Large Dynamic Range AC Electric Field Measurements.

We propose a piezoelectric-piezoresistive coupling electric field sensor capable of performing large dynamic range AC electric field measurements. The electric field sensor utilizes direct coupling between piezoelectric (PE) materials and piezoresistive (PR) strain gauges, in conjunction with an external signal conditioning circuit, to measure AC electric fields effectively. We verified the feasibility of the scheme using a finite element simulation, fabricated a prototype of the electric field sensor, and characterized the properties of the prototype. The testing results indicate that the sensor exhibits an ac resolution of 50 V/m and a linear measurable electric field range of 0 to over 200 kV/m, which keeps the linearity at less than 0.94% from 1 Hz to over 5 kHz. Furthermore, the sensor also has advantages, such as a small size and low power consumption. The sensor can enhance the comprehensive observability and measurability of digital power grids.

Interactions between MPs and PFASs in aquatic environments: A dual-character situation.

Microplastics (MPs) and per- and polyfluoroalkyl substances (PFASs) have drawn great attention as emerging threats to aquatic ecosystems. Although the literature to study the MPs and PFASs alone has grown significantly, our knowledge of the overlap and interactions between the two contaminations is scarce due to the unawareness of it. Actually, numerous human activities can simultaneously release MPs and PFASs, and the co-sources of the two are common, meaning that they have a greater potential for interactions. The direct interaction lies in the PFASs adsorption by MPs in water with integrated mechanisms including electrostatic and hydrophobic interactions, plus many influence factors. In addition, the existence and transportation of MPs and PFASs in the aquatic environment have been identified. MPs and PFASs can be ingested by aquatic organisms and cause more serious combined toxicity than exposure alone. Finally, curbing strategies of MPs and PFASs are overviewed. Wastewater treatment plants (WWTPs) can be an effective place to remove MPs from wastewater, while they are also an important point source of MPs pollution in water bodies. Although adsorption has proven to be a successful curbing method for PFASs, more technological advancements are required for field application. It is expected that this review can help revealing the unheeded relationship and interaction between MPs and PFASs in aquatic environments, thus assisting the further investigations of both MPs and PFASs as a whole.

Gene body hypomethylation of pyroptosis-related genes NLRP7, NLRP2, and NLRP3 facilitate non-invasive surveillance of hepatocellular carcinoma.

Programmed cell death (PCD) resistance is a key driver of cancer occurrence and development. The prognostic relevance of PCD-related genes in hepatocellular carcinoma (HCC) has attracted considerable attention in recent years. However, there is still a lack of efforts to compare the methylation status of different types of PCD genes in HCC and their roles in its surveillance. The methylation status of genes related to pyroptosis, apoptosis, autophagy, necroptosis, ferroptosis, and cuproptosis was analyzed in tumor and non-tumor tissues from TCGA. Whole-genome bisulfite sequencing (WGBS) data of paired tumor tissue and buffy coat samples were used to filter the potential interference of blood leukocytes in cell-free DNA (cfDNA). The WGBS data of healthy individuals' and early-stage HCC patients' cfDNA were analyzed to evaluate the distinguishing ability. The average gene body methylation (gbDNAme) of pyroptosis-related genes (PRGs) was significantly altered in HCC tissues relative to normal tissues, and their distinguishing ability was higher compared to the other types of PCD-related genes. The gbDNAme of NLRP7, NLRP2, and NLRP3 was reflective of the hypomethylation in HCC tissues, and methylation levels of NLRP3 correlated positively with its expression level (r=0.51). The candidate hypomethylated PRGs could discriminate between early HCC patients and healthy controls in cfDNA analysis with high accuracy (area under the receiver operation curve, AUC=0.94). Furthermore, the hypomethylation of PRGs was associated with poor prognosis of HCC. Gene body hypomethylation of PRGs is a promising biomarker for early HCC detection, monitoring of tumor recurrence, and prognosis prediction.

Integrative analysis of the expression and prognosis for CENPs in ovarian cancer.

Centromere proteins (CENPs) are nuclear proteins that are involved in centromere formation and chromosome segregation during mitosis. Some members of CENPs have been extensively studied in the initiation and development of cancers. However, the expression patterns and exact roles of CENPs in ovarian cancer (OC) have not been fully elucidated. In this study, we comprehensively assessed the genetic variation, expression patterns and prognostic value of CENPs in OC by several databases. The mRNA expression levels of CENPA/F/H/L/N/U/W were found to be significantly upregulated in OC and related to worse prognosis. Additionally, function enrichment analysis showed that CENPs were involved in DNA repair and cell division. Meanwhile, immune infiltration analysis elucidated that CENPs were associated with myeloid-derived suppressor cells (MDSCs) and major histocompatibility complex (MHC). These results suggested that CENPs might serve as potential diagnostic and prognostic markers and provide new insights for the development of CENPs-targeted therapeutics for ovarian cancer.

Stepwise artificial evolution of an Sw-5b immune receptor extends its resistance spectrum against resistance-breaking isolates of Tomato spotted wilt virus.

Plants use intracellular nucleotide-binding leucine-rich repeat immune receptors (NLRs) to recognize pathogen-encoded effectors and initiate immune responses. Tomato spotted wilt virus (TSWV), which has been found to infect >1000 plant species, is among the most destructive plant viruses worldwide. The Sw-5b is the most effective and widely used resistance gene in tomato breeding to control TSWV. However, broad application of tomato cultivars carrying Sw-5b has resulted in an emergence of resistance-breaking (RB) TSWV. Therefore, new effective genes are urgently needed to prevent further RB TSWV outbreaks. In this study, we conducted artificial evolution to select Sw-5b mutants that could extend the resistance spectrum against TSWV RB isolates. Unlike regular NLRs, Sw-5b detects viral elicitor NSm using both the N-terminal Solanaceae-specific domain (SD) and the C-terminal LRR domain in a two-step recognition process. Our attempts to select gain-of-function mutants by random mutagenesis involving either the SD or the LRR of Sw-5b failed; therefore, we adopted a stepwise strategy, first introducing a NSmRB -responsive mutation at the R927 residue in the LRR, followed by random mutagenesis involving the Sw-5b SD domain. Using this strategy, we obtained Sw-5bL33P/K319E/R927A and Sw-5bL33P/K319E/R927Q mutants, which are effective against TSWV RB carrying the NSmC118Y or NSmT120N mutation, and against other American-type tospoviruses. Thus, we were able to extend the resistance spectrum of Sw-5b; the selected Sw-5b mutants will provide new gene resources to control RB TSWV.

Plasmonic optical trapping of nanoparticles using T-shaped copper nanoantennas.

We demonstrate the optical trapping of single dielectric nanoparticles in a microfluidic chamber using a coupled T-shaped copper plasmonic nanoantenna for studying light-matter interaction. The nanoantenna is composed of two identical copper elements separated by a 50 nm gap and each element is designed with two nanoblocks. Our nanoantenna inherits three different advantages compared to previous plasmonic nanoantennas, which are usually made of gold. First, copper is a very promising plasmonic material with its very similar optical properties as gold. Second, copper is comparably cheap, which is compatible with industry-standard fabrication processes and has been widely used in microelectronics. Third, the trapping area of tweezers is expanded due to the intrinsic Fabry-Perot cavity with two parallel surfaces. We present finite element method simulations of the near-field distribution and photothermal effects. And we perform Maxwell stress tensor simulations of optical forces exerted on an individual nanoparticle in the vicinity of the nanoantenna. In addition, we examine how the existence of an oxide layer of cupric oxide and the heat sink substrate influence the optical trapping properties of copper nanoantennas. This work demonstrates that the coupled T-shaped copper nanoantennas are a promising means as optical nanotweezers to trap single nanoparticles in solution, opening up a new route for nanophotonic devices in optical information processing and on-chip biological sensing.

Where do we stand to oversee the coronaviruses in aqueous and aerosol environment? Characteristics of transmission and possible curb strategies.

By 17 October 2020, the severe acute respiratory syndrome coronavirus (SARS-CoV-2) has caused confirmed infection of more than 39,000,000 people in 217 countries and territories globally and still continues to grow. As environmental professionals, understanding how SARS-CoV-2 can be transmitted via water and air environment is a concern. We have to be ready for focusing our attention to the prompt diagnosis and potential infection control procedures of the virus in integrated water and air system. This paper reviews the state-of-the-art information from available sources of published papers, newsletters and large number of scientific websites aimed to provide a comprehensive profile on the transmission characteristics of the coronaviruses in water, sludge, and air environment, especially the water and wastewater treatment systems. The review also focused on proposing the possible curb strategies to monitor and eventually cut off the coronaviruses under the authors' knowledge and understanding.

Creating tidal flow via siphon for better pollutants removal in a microbial fuel cell-constructed wetland.

Oxygen is the electron acceptor in cathode chamber of microbial fuel cell-constructed wetland system (MFC-CW). The objective of the study lies in creating a "tidal flow" (TF) in cathode chamber via a siphon to enhance the oxygen diffusion, thus promoting the system performance. A laboratory scale MFC-CW with a siphon driven TF recirculation was proposed and designed. It allows the variable water level being created in four operational modes. The results demonstrated the significance of the siphon which was reflected by the attractive wastewater treatment performance. Compared with the tested four operational modes under the same hydraulic condition, the highest total nitrogen removal efficiency of 96.32% and COD removal efficiency of 92.37% were achieved, respectively, in 1st full siphon recirculation mode (FSR) and 2nd FSR operation mode. Indeed, the water level variation range played an important role in pollutants removal performance. Reduced water level variation of the TF in cathode chamber hindered excessive oxygen diffusion into MFC-CW and thus adversely affected the system performance. It is clear that the siphon is a wiser input to bring about the better treatment performance, but it is believed that the enhanced microbial activities behind the oxygen promotion is the driven force to exhibiting a better performance in the MFC-CW system.

A Smart Route for Encapsulating Pd Nanoparticles into a ZIF-8 Hollow Microsphere and Their Superior Catalytic Properties.

The encapsulation of catalytically active noble metal nanoparticles (NM NPs) into metal-organic frameworks (MOFs) represents an effective strategy for enhancing their catalytic performance. Despite a myriad of reports on the nanocomposites consisting of NM NPs and MOFs, it remains challenging to develop a sustainable and convenient method for realizing confined integration of NM NPs within a porous and hollow zinc-based MOF. Herein, a simple and well-designed approach is reported to the fabrication of Pd@ZIF-8 hollow microspheres with a number of Pd nanoparticles immobilized on the inner surface. This method capitalized on the use of polyvinylpyrrolidone (PVP)-stabilized polystyrene (PS) microspheres as templates, to harness the dual functions of PVP for reducing PdCl2 to generate Pd NPs and coordinating with zinc ions to grow ZIF-8 shells. Consequently, it avoids the complicated protocols involving surface treatment of template microspheres that conventionally adopts hazardous or costly agents. The obtained Pd@ZIF-8 hollow microspheres exhibit outstanding catalytic activity, size selectivity, and stability in the hydrogenation of alkenes. This study presents both the advances in the green synthesis and great potential of Pd@ZIF-8 hollow microspheres for catalytic applications.

Novel pyrene-pyridine oligomer nanorods for super-sensitive fluorescent detection of Pd2.

Conjugated polymers (CPs) can be fabricated into conjugated polymer nanoparticles of various shapes, thus tuning the hydrophobicity and sensing performances of the parent polymers. Herein, two new hydrophobic oligomeric CPs containing pyrene-pyridyl moieties, P1 and P2, were directly prepared and conveniently converted into hydrophilic nanorods, i.e. P1NRs and P2NRs (about 4-21 and 6-20 nm in diameter), by a modified microemulsion method. Notably, separated P1NRs exhibit excellent stability while P2NRs tend to stack on each other perhaps due to their different rigidity of π-delocalized backbones, which may have a profound effect on their fluorescence properties. In addition, Pd2+ can coordinate with the pyridyl N atoms, thereby causing ultrasensitive fluorescence quenching of P1NRs and P2NRs owing to the aggregation of oligomeric CP nanorods. These two simple nanosensors can help to determine Pd2+ with detection limits as low as 1 and 70 nM, respectively. It is worth noting that biocompatible P1NRs with bright blue fluorescence can be employed for efficient imaging of trace level Pd2+ ions in live cells.

Influence of glass wool as separator on bioelectricity generation in a constructed wetland-microbial fuel cell.

To figure out the impact of the separator on the electrical performance of the newly established constructed wetland-microbial fuel cell (CW-MFC), two parallel upflow CW-MFC systems, with and without glass wool (GW), were set up in this study. System performances in terms of bioelectricity production were monitored for more than 4 months. Results showed that the highest voltage was achieved in non-separator (NS) system (465.7 ± 4.2 mV with electrode spacing of 5 cm), which is 48.9% higher than the highest value generated in GW system (312 ± 7.0 mV with electrode spacing of 2 cm). The highest power density was produced in NS system (66.22 mW/m2), which is 3.9 times higher than the value in GW system (17.14 mW/m2). The diffusion of oxygen from the open air was greatly hindered by the biofilm formed under the cathode. This kind of biofilm can be severed as the "microbial separator", playing the same role in a real separator.

Recycling of drinking water treatment residue as an additional medium in columns for effective P removal from eutrophic surface water.

This study assesses the feasibility of recycling drinking water treatment residue (DWTR) to treat eutrophic surface water in a one-year continuous flow column test. Heat-treated DWTR was used as an additional medium (2%-4%) in columns in case excessive organic matter and N were released from the DWTR to surface water. The results indicated that with minimal undesirable effects on other water properties, DWTR addition substantially enhanced P removal, rendering P concentrations in treated water oligotrophic and treated water unsuitable for Microcystis aeruginosa breeding. Long-term stable P removal by DWTR-column treatment was mainly attributed to the relatively low P levels in raw water (<0.108 mg L-1) and high P adsorption capability of DWTR, as confirmed by increases in amorphous Al/Fe in DWTR after the tests and low adsorption of P in the mobile forms. The major components of DWTR showed minimal changes, and potential metal pollution from DWTR was not a factor to consider during recycling. DWTR also enriched functional bacterial genera that benefitted biogeochemical cycles and multiple pollution control (e.g., Dechloromonas, Geobacter, Leucobacter, Nitrospira, Rhodoplanes, and Sulfuritalea); an apparent decrease in Mycobacterium with potential pathogenicity was observed in DWTR-columns. Regardless, limited denitrification of DWTR-columns was observed as a result of low bioavailability of C in surface water. This finding indicates that DWTR can be used with other methods to ensure denitrification for enhanced treatment effects. Overall, the use of DWTR as an additional medium in column systems can potentially treat eutrophic surface water.

Adsorption of phosphorus with calcium alginate beads containing drinking water treatment residual.

Aluminum-based drinking water treatment residuals (DWTR) were encapsulated by alginate to develop a pelletized media (DWTR-CA beads) for phosphorus (P) adsorption. The beads were successfully manufactured to uniform size and shape requirements. The effects of DWTR powder concentration and particle size, and bead mean size on P adsorption, were investigated. The DWTR was found to be an important component in the beads for P adsorption, while the calcium alginate shell contributed little for P adsorption. The maximum P adsorption capacity of the DWTR-CA bead was 19.42 mg P/g wet beads, corresponding to a bead diameter of 3.1 ± 0.2 mm and DWTR concentration of 2% (1% weight/volume (W/V)), mg/mL). The adsorption data fit well with the intra-particle diffusion model and the pseudo-second-order kinetic model, while both the Langmuir and Freundlich adsorption isotherms described the adsorption process well. Furthermore, the study on the effect of pH on P adsorption showed that acidic conditions resulted in a better P adsorption and the DWTR-CA beads have the function of pH neutralization. The findings of this study show that the DWTR-CA beads are a promising adsorbent/substrate for P removal.

A comparison of alum sludge with peat for aqueous glyphosate removal for maximizing their value for practical use.

This study compares and contrasts the glyphosate removal efficiency of alum sludge (waterworks residue) and Irish peat in aqueous solution. Organic phosphonate of glyphosate aqueous solution was removed in pot tests separately filled with peat and alum sludge, while effluent samples were taken from each pot to analyse the concentration of phosphorus (P) and COD (chemical oxygen demand); physical and chemical analysis for both media before and after use was carried out subsequently. The results show that the P removal capacity of alum sludge was significant (>99%), while the removal capacity of peat was considerably less than 10% after 10 weeks. Both materials significantly reduced the levels of COD, but it was noted that peat had a marginally greater initial P removal capacity (68 ± 22%) and did perform better than alum sludge (57 ± 12%). Moreover, pre-treatment is a crucial step to harness the full potential of peat. Overall, this study provides a scientific clue for sorbents selection when considering alum sludge and peat to maximize their value in practice.

Homocysteine exaggerates microglia activation and neuroinflammation through microglia localized STAT3 overactivation following ischemic stroke.

BACKGROUND: Elevated plasma homocysteine (Hcy) levels have been indicated as a strong and modifiable risk factor of ischemic stroke; the previous studies have shown that exposure to Hcy activates cultured microglia. However, whether neurotoxicity of Hcy involves microglia activation following brain ischemia and the underlying mechanisms remains incompletely understood. METHODS: The cerebral damage was evaluated by staining with 2,3,5-triphenyltetrazolium chloride, hematoxylin-eosin, and Fluoro Jade B. The activation state of microglia was assessed via immunoreaction using the microglial markers Iba1 and OX-42. Then, the inflammatory factors such as tumor necrosis factor α (TNF-α), interleukin 6 (IL-6), and phosphorylated signal transducer and activator of transcription 3 (pSTAT3) were examined by Western blot analysis and fluorescence immunohistochemistry. RESULTS: Elevated Hcy level augmented brain damage and neural cell toxicity in the brain cortex and the dentate gyrus region of the hippocampus after cerebral ischemia/reperfusion. Meanwhile, Hcy activated microglia and induced the expression of the inflammatory factors such as TNF-α and IL-6. Moreover, Hcy caused an increase in pSTAT3 expression which occurs in microglial cells. AG490, a JAK2-STAT3 inhibitor, effectively inhibited the phosphorylation of STAT3, microglial cell activation and the secretion of IL-6, TNF-α raised by Hcy treatment. CONCLUSIONS: STAT3 signaling pathway located in microglia plays a critical role in mediating Hcy-induced activation of microglia and neuroinflammation in rat MCAO model. This suggests the feasibility of targeting the JAK2/STAT3 pathway as an effective therapeutic strategy to alleviate the progression of Hcy-associated ischemia stroke.

Inhibitory effect of homocysteine on rat neural stem cell growth in vitro is associated with reduced protein levels and enzymatic activities of aconitase and respiratory complex III.

Increased blood plasma concentration of the sulphur amino acid homocysteine (Hcy) is considered as an independent risk factor of the neurodegenerative diseases. However, the detailed molecular mechanisms by which Hcy leads to neurotoxicity have yet to be clarified. Recent research has suggested that neurotoxicity of Hcy may involve negative regulation of neural stem cell (NSC) proliferation. In the current study, primary NSCs were isolated from neonatal rat brain hippocampus and the inhibition in cell growth was observed after exposure to l50 µM and 500 µM L-Hcy. The changes in protein expression were monitored with densitometric 2D-gel electrophoresis coupled with MALDI-TOF mass spectrometry. Proteomic analysis revealed that the expression levels of two mitochondrial proteins, cytochrome bc1 complex2 (UQCRC2, the major component of electron transport chain complex III) and aconitase (an enzyme involved in the tricarboxylic acid cycle), were decreased in Hcy treatment group, compared to control group. Protein expression was further verified by Western blot, and their enzymatic activities were also down-regulated in NSCs after Hcy treatment. Restoration of aconitase and UQCRC2 protein levels using their expression vectors could partly rescue the cell viability inhibition caused by Hcy. Moreover, Hcy caused the increase in the intracellular levels of reactive oxygen species (ROS) and the decrease in ATP content, which are known to play important roles in the cellular stress response of the cell growth. Altogether, the results suggest that the decreased expression and enzymatic activities of the mitochondrial proteins may be possible causes of the overproduction of ROS and depletion of ATP. The inhibition in cell growth at the end of Hcy treatment was probably due to the changes in protein expression and mitochondrial dysfunction in vitro cultures of NSCs.

Embedding constructed wetland in sequencing batch reactor for enhancing nutrients removal: A comparative evaluation.

In the present study, a novel green bio-sorption reactor (GBR) was firstly proposed and preliminarily investigated by embedding constructed wetland (CW) into the aeration tank of the conventional activated sludge (CAS). This integrated novel system owns the striking features of adding carriers of wetland substrate (i.e. the dewatered alum sludge in this case) in CAS for robust phosphorus adsorption and enriching the biomass. Meanwhile, the "green" feature of this GBR imparted aesthetic value of CW to the CAS system. The preliminary 3-month trial of GBR based on a sequencing batch reactor (GB-SBR) with diluted piggery wastewater demonstrated an average removal of 96%, 99% and 90% for BOD, TP and TN, respectively. The comparison with moving bed biofilm reactor (MBBR) and integrated fixed-film activated sludge (IFAS) reflected the advantages of GBR over purification performance, aesthetic value and potential carbon sink. Moreover, the carriers used in the GBR are dewatered alum sludge which is in line with the policy of "recycle, reuse and reduce". Overall, this GBR undoubtedly offered a more sustainable and economical solution for retrofitting the aging CAS.

Energy capture and nutrients removal enhancement through a stacked constructed wetland incorporated with microbial fuel cell.

To improve the sustainability of constructed wetlands (CWs), a novel tiered wetland system integrated with a microbial fuel cell (MFC) was developed in this study. Compared to the single stage CW, chemical oxygen demand (COD) removal efficiency was improved from 83.2% to 88.7%. More significantly, this tiered system significantly enhanced total nitrogen removal efficiency (an increase from 53.1% to 75.4%). In terms of MFC integration, a gradually decreased performance in electricity production was observed during its 3 months of operation (the voltage dropped from nearly 600 mV to less than 300 mV), which resulted in a reduction of power density from around 2 W/m3 to less than 0.5 W/m3. The deterioration in performance of the air-cathode is the main reason behind this, since the electrode potential of the cathode under open circuit reduced from 348.5 mV to 49.5 mV while the anode potential kept constant at around -400 mV. However, in spite of its electrical performance reduction, it was proved that MFC integration enhanced COD removal and the nitrification process. Further work is needed to improve the stability and feasibility of this new system.

Constructed wetland integrated microbial fuel cell system: looking back, moving forward.

In the last 10 years, the microbial fuel cell (MFC) has been extensively studied worldwide to extract energy from wastewater via electricity generation. More recently, a merged technique of embedding MFC into a constructed wetland (CW) has been developed and appears to be increasingly investigated. The driving force to integrate these two technologies lies in the fact that CWs naturally possess a redox gradient (depending on flow direction and wetland depth), which is required by MFCs as anaerobic anode and aerobic cathode chambers. No doubt, the integration of MFC with a CW will upgrade the CW to allow it to be used for wastewater treatment and, simultaneously, electricity generation, making CWs more sustainable and environmentally friendly. Currently, published work shows that India, China, Ireland, Spain, Germany and Malaysia are involved in the development of this technology although it is in its infant stage and many technical issues are faced on system configuration, operation and maximisation of electricity production. This paper aims to provide an updated review and analysis of the CW-MFC development. Focuses are placed on the experience gained so far from different researchers in the literature and further research directions and proposals are discussed in great detail.