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1.
Biophys J ; 119(11): 2240-2250, 2020 12 01.
Artículo en Inglés | MEDLINE | ID: mdl-33121942

RESUMEN

Assessing the structural properties of large proteins is important to gain an understanding of their function in, e.g., biological systems or biomedical applications. We propose a method to examine the mechanical properties of proteins subject to applied forces by means of multiscale simulation. Both stretching and torsional forces are considered, and these may be applied independently of each other. As a proof of principle, we apply torsional forces to a coarse-grained continuum model of the antibody protein immunoglobulin G using fluctuating finite element analysis and use it to identify the area of strongest deformation. This region is essential to the torsional properties of the molecule as a whole because it represents the softest, most deformable domain. Zooming in, this part of the molecule is subjected to torques and stretching forces using molecular dynamics simulations on an atomistically resolved level to investigate its torsional properties. We calculate the torsional resistance as a function of the rotation of the domain while subjecting it to various stretching forces. From this, we assess how the measured twist-torque profiles develop with increasing stretching force and show that they exhibit torsion stiffening, in qualitative agreement with experimental findings. We argue that combining the twist-torque profiles for various stretching forces effectively results in a combined force-torque spectroscopy analysis, which may serve as a mechanical signature for a biological macromolecule.


Asunto(s)
Torque , Análisis de Elementos Finitos , Rotación , Análisis Espectral , Torsión Mecánica
2.
Langmuir ; 34(41): 12471-12481, 2018 10 16.
Artículo en Inglés | MEDLINE | ID: mdl-30247043

RESUMEN

Evaporation of sessile droplets on a flat surface involves a complex interplay between phase change, diffusion, advection, and surface forces. In an attempt to significantly reduce the complexity of the problem and to make it manageable, we propose a simple model hinged on a surface free-energy-based relaxation dynamics of the droplet shape, a diffusive evaporation model, and a contact line pinning mechanism governed by a yield stress. Our model reproduces the known dynamics of droplet shape relaxation and of droplet evaporation, both in the absence and in the presence of contact line pinning. We show that shape relaxation during evaporation significantly affects the lifetime of a drop. We find that the dependence of the evaporation time on the initial contact angle is a function of the competition between the shape relaxation and evaporation and is strongly affected by any contact line pinning.

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