RESUMEN
We examined Fusobacterium nucreatum (F. nucleatum) and whole Fusobacterium species (Pan-fusobacterium) in non-neoplastic Barrett's esophagus (BE) from patients without cancer (n = 67; N group), with esophageal adenocarcinoma (EAC) (n = 27) and EAC tissue (n = 22). F. nucleatum was only detectable in 22.7% of EAC tissue. Pan-fusobacterium was enriched in EAC tissue and associated with aggressive clinicopathological features. Amount of Pan-fusobacterium in non-neoplastic BE was correlated with presence of hital hernia and telomere shortening. The result suggested potential association of Fusobacterium species in EAC and BE, featuring clinicpathological and molecular features.
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Adenocarcinoma , Esófago de Barrett , Neoplasias Esofágicas , Humanos , Neoplasias Esofágicas/microbiología , Neoplasias Esofágicas/patología , Adenocarcinoma/microbiología , Adenocarcinoma/patología , Esófago de Barrett/microbiología , Esófago de Barrett/patología , Masculino , Persona de Mediana Edad , Femenino , Anciano , Fusobacterium/aislamiento & purificación , Fusobacterium/genética , Fusobacterium nucleatum/aislamiento & purificación , AdultoRESUMEN
Women with bacterial vaginosis (BV), an imbalance of the vaginal microbiome, are more likely to be colonized by potential pathogens such as Fusobacterium nucleatum, a bacterium linked with intrauterine infection and preterm birth. However, the conditions and mechanisms supporting pathogen colonization during vaginal dysbiosis remain obscure. We demonstrate that sialidase activity, a diagnostic feature of BV, promoted F. nucleatum foraging and growth on mammalian sialoglycans, a nutrient resource that was otherwise inaccessible because of the lack of endogenous F. nucleatum sialidase. In mice with sialidase-producing vaginal microbiotas, mutant F. nucleatum unable to consume sialic acids was impaired in vaginal colonization. These experiments in mice also led to the discovery that F. nucleatum may also "give back" to the community by reinforcing sialidase activity, a biochemical feature of human dysbiosis. Using human vaginal bacterial communities, we show that F. nucleatum supported robust outgrowth of Gardnerella vaginalis, a major sialidase producer and one of the most abundant organisms in BV. These results illustrate that mutually beneficial relationships between vaginal bacteria support pathogen colonization and may help maintain features of dysbiosis. These findings challenge the simplistic dogma that the mere absence of "healthy" lactobacilli is the sole mechanism that creates a permissive environment for pathogens during vaginal dysbiosis. Given the ubiquity of F. nucleatum in the human mouth, these studies also suggest a possible mechanism underlying links between vaginal dysbiosis and oral sex.
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Proteínas Bacterianas/genética , Disbiosis/microbiología , Fusobacterium/metabolismo , Gardnerella vaginalis/metabolismo , Neuraminidasa/genética , Polisacáridos/metabolismo , Vaginosis Bacteriana/microbiología , Animales , Proteínas Bacterianas/metabolismo , Técnicas de Tipificación Bacteriana , Disbiosis/patología , Femenino , Fusobacterium/genética , Fusobacterium/aislamiento & purificación , Fusobacterium/patogenicidad , Gardnerella vaginalis/genética , Gardnerella vaginalis/aislamiento & purificación , Gardnerella vaginalis/patogenicidad , Expresión Génica , Humanos , Ratones , Ratones Endogámicos C57BL , Microbiota/genética , Neuraminidasa/metabolismo , ARN Ribosómico 16S/genética , Ácidos Siálicos/metabolismo , Simbiosis/genética , Vagina/microbiología , Vaginosis Bacteriana/patologíaRESUMEN
The genus Fusobacterium contains currently 13 species presenting as non-sporing, obligate anaerobic, Gram-negative fusiform rods. Fusobacterium ulcerans was discovered in 1988 causing tropical ulcers. We present the case of a patient with diverticulitis complicated with bacteremia. Both aerobic bottles were positive at 20 and 24 h, while one anaerobic bottle was positive at 36 h. Escherichia coli and Fusobacterium ulcerans were identified from subcultures by MALDI-TOF MS with a score of 2.02 and 2.35, respectively. The 16S rRNA gene was sequenced in order to confirm the identification of F. ulcerans with a 100% homology to the reference strain. The patient was treated with 4 g/0,5 g of IV piperacillin/tazobactam and later with 1 g/0,2 g of amoxicillin/clavulanic during 7 days with good clinical evolution.
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Bacteriemia , Traslocación Bacteriana , Humanos , ARN Ribosómico 16S/genética , Fusobacterium/genética , Bacteriemia/microbiología , Bacterias Gramnegativas , Espectrometría de Masa por Láser de Matriz Asistida de Ionización DesorciónRESUMEN
INTRODUCTION: Fusobacterium and several bacteria are reported to be associated with colorectal cancer (CRC). However, their relationship and whether they cause CRC or are just adapted to the cancerous environment is not known. We approached this subject by investigating the correlation and distribution of the bacteria throughout the colon in patients with CRC and elucidated the relationship between microbiota and CRC. METHODS: Twenty-five patients with CRC who underwent colonoscopy for endoscopic submucosal dissection or surgery were prospectively enrolled. Fecal samples were taken before bowel preparation, and mucosal samples were collected from three sites (tumor surface, tumor-adjacent mucosa, and cecum) during colonoscopy using a cytology brush. The microbiota was identified and analyzed by sequencing of the 16S rRNA gene of the V3-V4 region. We evaluated the correlation between the bacteria based on network analysis and the distribution of Fusobacterium in the colon. RESULTS: A network consisting of many bacteria was found in all sites; especially, oral origin bacteria including Fusobacterium formed a positively correlated network on tumor surface. Streptococcus showed a significantly higher relative abundance on tumor surface than in feces. The relative abundance of Fusobacterium had significant positive correlations between tumor surface and feces, tumor-adjacent mucosa, and cecum. CONCLUSION: In patients with CRC, many bacteria were correlated with each other, and Fusobacterium and oral origin bacteria formed a positively correlated network on tumor surface. Fusobacterium was equally distributed on tumor surface and throughout the lumen and mucus in the colon. In the colon where Fusobacterium is widely distributed, Fusobacterium would adhere to the tumor surface and be correlated with oral origin bacteria to make a microenvironment that is favorable for CRC.
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Neoplasias Colorrectales , Microbioma Gastrointestinal , Microbiota , Humanos , Fusobacterium/genética , ARN Ribosómico 16S/genética , Neoplasias Colorrectales/cirugía , Neoplasias Colorrectales/patología , Heces/microbiología , Bacterias/genética , Membrana Mucosa/patología , Microambiente TumoralRESUMEN
OBJECTIVE: Although anaerobic bacteria are important agents of a wide variety of serious infections, they are overlooked often in the etiology of infection due to difficulties in isolation and detection. The aim of this study was to develop a new multiplex PCR panel that could detect Bacteroides, Fusobacterium, Prevotella, Veillonella, Clostridium, Peptostreptococcus, and Actinomyces bacteria, which are the most frequently isolated from anaerobic infections, at the genus level. METHOD: Aerobic and anaerobic cultures were performed on 46 clinical specimens, with suspicion of anaerobic infection and were sent to the laboratory. DNA isolation was performed with the same samples and anaerobic bacteria were detected by the multiplex PCR test developed in the study. RESULT: The analytical sensitivity of the multiplex PCR assay was found to be 1-103 CFU/ml, depending on the bacterial species. In this study, anaerobic growth was observed in eight (17.4%) of 46 clinical samples. The multiplex PCR test detected 35 anaerobic bacteria from 20 (43.5%) of 46 clinical samples. The most common anaerobes isolated from clinical specimens by the multiplex PCR assay were Prevotella spp. (37.1%) and Fusobacterium spp. (22.9%) while Clostridium spp. (14.3%), Peptostreptococcus spp. (11.4%), Bacteroides spp. (8.6%), and Veillonella spp. (5.7%) followed these genera. CONCLUSION: As a result, it was concluded that the multiplex PCR panel developed in this study eliminates problems in the detection of anaerobes based on culture, provides more accurate detection of anaerobic bacteria from clinical specimens, takes a shorter time, and allows more accurate infection treatment.
Asunto(s)
Bacterias Anaerobias , Infecciones Bacterianas , Bacterias/genética , Infecciones Bacterianas/microbiología , Clostridium , Fusobacterium/genética , Humanos , Reacción en Cadena de la Polimerasa MultiplexRESUMEN
Strictly anaerobic bacteria are important to both human health and industrial usage. These bacteria are sensitive to oxygen, therefore, it is preferable to manipulate these microbes in an anaerobic chamber. However, commercial anaerobic chambers (CACs) are expensive, making them less accessible to scientists with a limited budget, especially to those in developing countries. The high price of commercial chambers has hindered, at least partially, the progress of research on anaerobes in developing countries. In the research presented here, we developed an inexpensive and reliable anaerobic chamber and successfully achieved routine maintenance of eleven strictly anaerobic bacterial strains. Furthermore, genetic manipulation examples have been set for both Clostridioidesdifficile 630 and Clostridiumbeijerinckii NCIMB 8052 strains to validate that the chamber could applied to advanced genetic engineering of strictly anaerobes. C. difficile and C. beijerinckii were both genetically manipulated in this chamber, showing it's utility for the genetic engineering of anaerobes. Most importantly, the anaerobic chamber was 76% - 88% less expensive than a CACs and has similar functionality with regards to the cultivation and manipulation of strictly anaerobic bacteria. The anaerobic chamber described in this study will promote the research of anaerobes in developing counties and scientists who have limited research budgets.
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Bacterias Anaerobias/genética , Clostridium/genética , Diseño de Equipo/economía , Fusobacterium/genética , Ingeniería Genética/economía , Ingeniería Genética/instrumentación , Ingeniería Genética/métodos , Bacterias Anaerobias/crecimiento & desarrollo , Clostridium/crecimiento & desarrollo , Fusobacterium/crecimiento & desarrollo , HumanosRESUMEN
Eight spindle-shaped bacteria were isolated from clinical samples in Japan and investigated for their taxonomic position. Phylogenetic trees (based on 16S rRNA, rpoB, zinc protease, and gyrB gene sequence comparisons) showed distinct clustering of eight strains with the type strain of Fusobacterium nucleatum and its closely related species. In silico whole genome comparison analysis based on average nucleotide index based on BLAST (ANIb) and digital DNA-DNA hybridization (dDDH) data between our clinical isolates (PAGU 1795, PAGU 1796T, and PAGU 1797) and the type strain of the closely related species showed values of less than 92.4% and 49.5%, respectively. On the basis of its phylogenetic and genomic distinctiveness together with differential phenotypic properties and matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) characteristic signal patterns, we propose Fusobacterium watanabei sp. nov., with the type strain PAGU 1796T (= GTC 21791T = CCUG 74246T).
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Clasificación , Fusobacterium/clasificación , Fusobacterium/citología , Fusobacterium/genética , Genes Bacterianos , Fenotipo , Filogenia , Infecciones por Fusobacterium/genética , Variación Genética , Genoma , Humanos , JapónRESUMEN
Fusobacterium spp. are Gram-negative, anaerobic, opportunistic pathogens involved in multiple diseases, including a link between the oral pathogen Fusobacterium nucleatum and the progression and severity of colorectal cancer. The identification and characterization of virulence factors in the genus Fusobacterium has been greatly hindered by a lack of properly assembled and annotated genomes. Using newly completed genomes from nine strains and seven species of Fusobacterium, we report the identification and corrected annotation of verified and potential virulence factors from the type 5 secreted autotransporter, FadA, and MORN2 protein families, with a focus on the genetically tractable strain F. nucleatum subsp. nucleatum ATCC 23726 and type strain F. nucleatum subsp. nucleatum ATCC 25586. Within the autotransporters, we used sequence similarity networks to identify protein subsets and show a clear differentiation between the prediction of outer membrane adhesins, serine proteases, and proteins with unknown function. These data have identified unique subsets of type 5a autotransporters, which are key proteins associated with virulence in F. nucleatum However, we coupled our bioinformatic data with bacterial binding assays to show that a predicted weakly invasive strain of F. necrophorum that lacks a Fap2 autotransporter adhesin strongly binds human colonocytes. These analyses confirm a gap in our understanding of how autotransporters, MORN2 domain proteins, and FadA adhesins contribute to host interactions and invasion. In summary, we identify candidate virulence genes in Fusobacterium, and caution that experimental validation of host-microbe interactions should complement bioinformatic predictions to increase our understanding of virulence protein contributions in Fusobacterium infections and disease.IMPORTANCEFusobacterium spp. are emerging pathogens that contribute to mammalian and human diseases, including colorectal cancer. Despite a validated connection with disease, few proteins have been characterized that define a direct molecular mechanism for Fusobacterium pathogenesis. We report a comprehensive examination of virulence-associated protein families in multiple Fusobacterium species and show that complete genomes facilitate the correction and identification of multiple, large type 5a secreted autotransporter genes in previously misannotated or fragmented genomes. In addition, we use protein sequence similarity networks and human cell interaction experiments to show that previously predicted noninvasive strains can indeed bind to and potentially invade human cells and that this could be due to the expansion of specific virulence proteins that drive Fusobacterium infections and disease.
Asunto(s)
Adhesinas Bacterianas/genética , Fusobacterium/genética , Fusobacterium/patogenicidad , Genoma Bacteriano , Sistemas de Secreción Tipo V/genética , Factores de Virulencia/genética , Adhesinas Bacterianas/clasificación , Adhesinas Bacterianas/metabolismo , Secuencia de Aminoácidos , Adhesión Bacteriana , Línea Celular , Biología Computacional/métodos , Células Epiteliales/microbiología , Células Epiteliales/patología , Fusobacterium/clasificación , Fusobacterium/metabolismo , Infecciones por Fusobacterium/microbiología , Infecciones por Fusobacterium/patología , Expresión Génica , Encía/microbiología , Encía/patología , Células HCT116 , Humanos , Filogenia , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Sistemas de Secreción Tipo V/clasificación , Sistemas de Secreción Tipo V/metabolismo , Virulencia , Factores de Virulencia/clasificación , Factores de Virulencia/metabolismoRESUMEN
In the present study, three strains (ChDC F213T, ChDC F251, and ChDC F267) were classified as novel species of genus Fusobacterium based on average nucleotide identity (ANI) and genome-to-genome distance (GGD) analysis and chemotaxonomic characterization. 16S rDNA sequences of strains ChDC F213T, ChDC F251, and ChDC F267 were highly similar to that of F. periodonticum ATCC 33693T (99.6, 99.4, and 99.4%, respectively). ANI and GGD values of the three isolates with F. periodonticum ATCC 33693T ranged from 92.5 to 92.6% and 47.7 to 48.2%, respectively. Considering that threshold of ANI and GGD values for bacterial species discrimination are 95-96% and 70%, respectively, these results indicate that the three isolates represent a novel Fusobacterium species. DNA G + C contents of the three isolates were 28.0 mol% each. Cellular fatty acid analysis of these strains revealed that C14:0, C16:0, and C16:1 ω6c/C16:1 ω7c were major fatty acids. Therefore, these three strains are novel species belonging to genus Fusobacterium. Strain ChDC F213T (= KCOM 1259T = KCTC 5677T = JCM 33009T) is the type strain of a novel species of genus Fusobacterium, for which a name of Fusobacterium pseudoperiodonticum sp. nov. is proposed.
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Fusobacterium/clasificación , Fusobacterium/aislamiento & purificación , Boca/microbiología , Composición de Base , Análisis por Conglomerados , Citosol/química , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Ácidos Grasos/análisis , Fusobacterium/química , Fusobacterium/genética , Humanos , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido NucleicoRESUMEN
BACKGROUND AND OBJECTIVE: Smoking is a recognized risk factor for peri-implant disease and leads to microbiological changes in mucositis and peri-implantitis. However, there is no knowledge about the impact of smoking in healthy peri-implant tissue. The aim of the study was to evaluate the microbiome in a peri-implant environment in smokers with healthy peri-implant conditions. METHODS: Peri-implant biofilm was collected around single clinically healthy, screwed-retained, teeth-surrounded implants in 12 non-smoker (NSMK) and 12 smoker (SMK) non-periodontitis subjects (no bleeding and probing depth <4 mm). Bacterial DNA was isolated and 16S ribosomal RNA gene libraries were sequenced using pyrosequencing, targeting the V3-V4 region. Datasets were processed using the Quantitative Insights into Microbial Ecology, Greengenes and the Human Oral Microbiome Database databases. RESULTS: An evident difference in the SMK peri-implant microbiome was observed compared to the NSMK microbiome, with a large abundance of species, even with a healthy peri-implant. The SMK core-microbiome showed an abundance of Fusobacterium, Tannerella and Mogibacterium, while the NSMK core revealed an abundance of Actinomyces, Capnocytophaga and Streptococcus, genera that are usually related to periodontal health. The microbiome inter-relationship was shown to be more inter-generic in SMK then in NSMK, indicating different microbiome cohesion. CONCLUSION: Smoking negatively affected the peri-implant microbiome, leading to a disease-associated state, even in clinically healthy individuals.
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Biopelículas , Implantes Dentales/microbiología , Periimplantitis/etiología , Periimplantitis/microbiología , Fumar/efectos adversos , Actinomyces/genética , Actinomyces/aislamiento & purificación , Adulto , Capnocytophaga/genética , Capnocytophaga/aislamiento & purificación , Estudios de Casos y Controles , ADN Bacteriano/genética , ADN Bacteriano/aislamiento & purificación , Fusobacterium/genética , Fusobacterium/aislamiento & purificación , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Masculino , Microbiota/genética , Persona de Mediana Edad , Periodontitis/microbiología , ARN Ribosómico 16S/genética , Tannerella forsythia/genética , Tannerella forsythia/aislamiento & purificaciónRESUMEN
Trueperella pyogenes is one of the most important microorganisms causing metritis in post-partum cattle. Co-infection with other bacterial species such as Escherichia coli or Fusobacterium necrofurom increases the severity of the disease and the persistence of bacteria in utero. The aim of this study was to investigate the frequency of T. pyogenes strains, and their virulence and antimicrobial resistant profiles in metritis cases. The study was carried out on 200 samples obtained from metritis discharges of postpartum cattle on 18 farms around Tehran, Iran. Sixty-five T. pyogenes isolates (32.5%) were identified, of which 16 isolates were detected as pure cultures and the other 49 isolates from cultures most commonly mixed with E. coli or F. necrofurom. In terms of diversity in biochemical characteristic of T. pyogenes strains, 8 different biotypes were identified among the isolates. Single or multi antimicrobial resistance was observed in 48 isolates (73.9%), which was mostly against trimethoprim sulfamethoxazole, azithromycin, erythromycin and streptomycin. The tetracycline resistance gene tetW and macrolide resistance genes ermB and ermX were detected in 30, 18 and 25 isolates, respectively. In the screening of genes encoding virulence factors, fimA and plo genes were identified in all tested isolates. Genes encoding nanP, nanH, fimC, fimG, fimE and cbpA were detected in 50, 54, 45, 40, 50 and 37 of isolates, respectively. Thirteen different genotypes were observed in these T. pyogenes isolates. A significant association between clonal types and virulence factor genes, biochemical profile, CAMP test result, severity of the disease and sampling time was detected.
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Actinomycetaceae/genética , Infecciones por Actinomycetales/veterinaria , Genes Bacterianos , Infección Puerperal/veterinaria , Factores de Virulencia/genética , Actinomycetaceae/clasificación , Actinomycetaceae/aislamiento & purificación , Actinomycetaceae/patogenicidad , Infecciones por Actinomycetales/microbiología , Infecciones por Actinomycetales/patología , Animales , Antibacterianos/farmacología , Azitromicina/farmacología , Técnicas de Tipificación Bacteriana , Bovinos , Células Clonales , Farmacorresistencia Bacteriana Múltiple/genética , Eritromicina/farmacología , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Escherichia coli/patogenicidad , Infecciones por Escherichia coli/microbiología , Infecciones por Escherichia coli/patología , Infecciones por Escherichia coli/veterinaria , Femenino , Fusobacterium/genética , Fusobacterium/aislamiento & purificación , Fusobacterium/patogenicidad , Infecciones por Fusobacterium/microbiología , Infecciones por Fusobacterium/patología , Infecciones por Fusobacterium/veterinaria , Irán , Parto/fisiología , Infección Puerperal/microbiología , Infección Puerperal/patología , Estreptomicina/farmacología , Combinación Trimetoprim y Sulfametoxazol/farmacología , Útero/microbiología , Útero/patología , Factores de Virulencia/metabolismoRESUMEN
Colorectal cancer is a leading cause of morbidity and mortality worldwide in both men and women. The gut microbiome is increasingly recognized as having an important role in human health and disease. Fusobacterium has been identified in former studies as a leading gut bacterium associated with colorectal cancer, but it is still not clear if it plays an oncogenic role. In the current study, fecal samples were collected prior to bowel preparation from participants of screening colonoscopy in the German BliTz study. Using 16S rRNA gene analysis, we examined the presence and relative abundance of Fusobacterium in fecal samples from 500 participants, including 46, 113, 110 and 231 individuals with colorectal cancer, advanced adenomas, non-advanced adenomas and without any neoplasms, respectively. We found that the abundance of Fusobacterium in feces was strongly associated with the presence of colorectal cancer (P-value < 0.0001). This was confirmed by PCR at the species level for Fusobacterium nucleatum. However, no association was seen with the presence of advanced adenomas (P-value = 0.80) or non-advanced adenomas (P-value = 0.80), nor were there any associations observed with dietary or lifestyle habits. Although a causal role cannot be ruled out, our observations, based on fecal microbiome, support the hypothesis that Fusobacterium is a passenger that multiplies in the more favorable conditions caused by the malignant tumor rather than a causal factor in colorectal cancer development.
Asunto(s)
Neoplasias Colorrectales/microbiología , Fusobacterium/aislamiento & purificación , Microbioma Gastrointestinal/genética , Anciano , Neoplasias Colorrectales/genética , Neoplasias Colorrectales/patología , Detección Precoz del Cáncer , Heces/microbiología , Femenino , Fusobacterium/genética , Fusobacterium/patogenicidad , Humanos , Masculino , Persona de Mediana Edad , ARN Ribosómico 16S/genéticaRESUMEN
Sarcoidosis is a granulomatous disease that mainly affects the lung. A role of microbial factors in disease pathogenesis is assumed, but has not been investigated systematically in a large cohort.This cross-sectional study compared the lung microbiota of 71 patients with sarcoidosis, 15 patients with idiopathic pulmonary fibrosis (non-infectious controls) and 10 healthy controls (HCs). Next-generation sequencing of 16S DNA was used on bronchoalveolar lavage samples to characterise the microbial composition, which was analysed for diversity and indicator species. Host genotypes for 13 known sarcoidosis risk variants were determined and correlated with microbial parameters.The microbial composition differed significantly between sarcoidosis and HC samples (redundancy analysis ANOVA, p=0.025) and between radiographic Scadding types. Atopobium spp. was detected in 68% of sarcoidosis samples, but not in HC samples. Fusobacterium spp. was significantly more abundant in sarcoidosis samples compared with those from HCs. Mycobacteria were found in two of 71 sarcoidosis samples. Host-genotype analysis revealed an association of the rs2076530 (BTNL2) risk allele with a decrease in bacterial burden (p=0.002).Our results indicate Scadding type-dependent microbiota in sarcoidosis BAL samples. Atopobium spp. and Fusobacterium spp. were identified as sarcoidosis-associated bacteria, which may enable new insights into the pathogenesis and treatment of the disease.
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Actinobacteria/aislamiento & purificación , Fusobacterium/aislamiento & purificación , Pulmón/microbiología , Microbiota , Sarcoidosis/microbiología , Actinobacteria/genética , Adulto , Anciano , Anciano de 80 o más Años , Alelos , Líquido del Lavado Bronquioalveolar/microbiología , Butirofilinas/genética , Estudios de Casos y Controles , Estudios Transversales , Femenino , Fusobacterium/genética , Alemania , Humanos , Masculino , Persona de Mediana Edad , ARN Ribosómico 16S/genética , Sarcoidosis/genética , Adulto JovenRESUMEN
The presence of common periodontopathic bacteria, the Fusobacterium nucleatum-periodonticum-simiae group, Prevotella intermedia, and Porphyromonas gingivalis was determined from respiratory tract specimens of bacterial pneumonia by real-time PCR using universal and species-specific TaqMan probe/primer sets. 42 patients with infectious pneumonia and 45 patients without infectious pneumonia were retrospectively enrolled in clinical studies. Periodontopathic bacterial DNA was found in 57.1% cases of infectious pneumonia and 31.1% cases of noninfectious pulmonary disease. However, the proportion of periodontopathic bacterial DNA did not differ between the two groups, and the presence or proportion of periodontopathic bacterial DNA was not related to any clinical index of pneumonia. Only two pneumonia cases consisted of >30% Fusobacterium DNA, suggesting that Fusobacterium was the causal pathogen in these cases. Our findings suggest that the periodontopathic bacteria rarely proliferate and be etiological pathogen in lower airway tract. However, further study is necessary, focusing on the pathogenicity of F. nucleatum in pulmonary infectious disease.
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ADN Bacteriano/aislamiento & purificación , Fusobacterium/aislamiento & purificación , Neumonía Bacteriana/microbiología , Porphyromonas gingivalis/aislamiento & purificación , Prevotella intermedia/aislamiento & purificación , Sistema Respiratorio/microbiología , Anciano , Femenino , Fusobacterium/genética , Humanos , Masculino , Persona de Mediana Edad , Periodontitis/microbiología , Reacción en Cadena de la Polimerasa , Porphyromonas gingivalis/genética , Prevotella intermedia/genética , Estudios Retrospectivos , Índice de Severidad de la EnfermedadRESUMEN
We present the first case of a complicated foot infection caused by Fusobacterium russii in Austria. F. russii is highly associated with mammals such as cats and dogs. Our case underlines the difficulties in isolation and identification of anaerobes and the pitfalls in antimicrobial treatment of polymicrobial infections.
Asunto(s)
Úlcera del Pie/microbiología , Antepié Humano/microbiología , Infecciones por Fusobacterium/microbiología , Fusobacterium/aislamiento & purificación , Infecciones por Pasteurella/microbiología , Infecciones Estreptocócicas/microbiología , Anciano , Anaerobiosis , Animales , Antibacterianos/uso terapéutico , Gatos , Coinfección , Úlcera del Pie/tratamiento farmacológico , Úlcera del Pie/patología , Úlcera del Pie/cirugía , Antepié Humano/patología , Antepié Humano/cirugía , Fusobacterium/efectos de los fármacos , Fusobacterium/genética , Infecciones por Fusobacterium/tratamiento farmacológico , Infecciones por Fusobacterium/patología , Infecciones por Fusobacterium/cirugía , Humanos , Masculino , Infecciones por Pasteurella/tratamiento farmacológico , Infecciones por Pasteurella/patología , Infecciones por Pasteurella/cirugía , Pasteurella multocida/efectos de los fármacos , Pasteurella multocida/genética , Pasteurella multocida/aislamiento & purificación , ARN Ribosómico 16S/genética , Infecciones Estreptocócicas/tratamiento farmacológico , Infecciones Estreptocócicas/patología , Infecciones Estreptocócicas/cirugía , Streptococcus/efectos de los fármacos , Streptococcus/genética , Streptococcus/aislamiento & purificaciónRESUMEN
The tumor microenvironment of colorectal carcinoma is a complex community of genomically altered cancer cells, nonneoplastic cells, and a diverse collection of microorganisms. Each of these components may contribute to carcinogenesis; however, the role of the microbiota is the least well understood. We have characterized the composition of the microbiota in colorectal carcinoma using whole genome sequences from nine tumor/normal pairs. Fusobacterium sequences were enriched in carcinomas, confirmed by quantitative PCR and 16S rDNA sequence analysis of 95 carcinoma/normal DNA pairs, while the Bacteroidetes and Firmicutes phyla were depleted in tumors. Fusobacteria were also visualized within colorectal tumors using FISH. These findings reveal alterations in the colorectal cancer microbiota; however, the precise role of Fusobacteria in colorectal carcinoma pathogenesis requires further investigation.
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Neoplasias Colorrectales/microbiología , Fusobacterium/genética , Genoma Bacteriano , Fusobacterium/clasificación , Fusobacterium/patogenicidad , Humanos , Intestino Grueso/microbiología , Metagenoma/genética , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADNRESUMEN
In this study, we classified the five strains (ChDC F128(T), ChDC F145, ChDC F174, ChDC F206, and ChDC F300) as a novel species of genus Fusobacterium by DNA-DNA hybridization and multi-locus phylogenetic analysis (MLPA), based on a single sequence (24,715 bp) of 22 concatenated housekeeping genes, with morphological and chemotaxonomic characteristics. DNA-DNA hybridization data showed that the values of genomic relatedness between ChDC F128(T) and each of the other novel strains were ranged from 79.0 to 82.6 %, while those of genomic relatedness between ChDC F128(T) and type strain of each of subspecies of F. nucleatum or Fusobacterium periodonticum were ranged from 40.9 to 54.4 %. MLPA revealed that the 5 strains were clustered as one group and clearly discriminated with F. nucleatum and F. periodonticum with 100 % bootstrap value. The DNA G+C content of the five novel strains were ranged from 26.9 to 27.0 mol%. The cellular fatty acid analysis of clinical isolates and type strains revealed C14:0, C16:0, and cis-9 C16:1 as the major fatty acids. The cell wall peptidoglycan of the 5 strains was comprised of meso-lanthionine. These results show that the 5 strains are novel species and belong to the genus Fusobacterium. Strain ChDC F128(T) (=KCOM 1249(T) = KCTC 5108(T) = JCM 30218(T)) is suggested to be the type strain of a novel species of genus Fusobacterium, for which the name Fusobacterium hwasookii sp. nov. is proposed.
Asunto(s)
Infecciones por Fusobacterium/microbiología , Fusobacterium , Periodontitis/microbiología , Composición de Base , ADN Bacteriano , Fusobacterium/clasificación , Fusobacterium/genética , Fusobacterium/metabolismo , Genes Esenciales , Humanos , Tipificación de Secuencias Multilocus , FilogeniaRESUMEN
AIM: Establishment of ruminal bacterial community in dairy calves. METHODS AND RESULTS: Rumen bacterial community was analysed on 6 calves bred according to commercial practices from day one to weaning at day 83 of age, using 454 16S rRNA-based pyrosequencing. Samples taken at day 1 did not produce amplicons. Analysis of data revealed a three-stage implantation process with a progressive but important shift of composition. At day 2, the bacterial community was mainly composed of Proteobacteria (70%) and Bacteroidetes (14%), and Pasteurellaceae was the dominant family (58%). The bacterial community abruptly changed between days 2 and 3, and until day 12, dominant genera were Bacteroides (21%), Prevotella (11%), Fusobacterium (5%) and Streptococcus (4%). From 15 to 83 days, when solid food intake rapidly increased, Prevotella became dominant (42%) and many genera strongly decreased or were no longer detected. A limited number of bacteria genera correlated with feed intake, rumen volatile fatty acids and enzymatic activities. CONCLUSION: The ruminal bacterial community is established before intake of solid food, but solid food arrival in turn shapes this community. SIGNIFICANCE AND IMPACT OF THE STUDY: This study provides insight into the establishment of calves' rumen bacterial community and suggests a strong effect of diet.
Asunto(s)
Bacterias/crecimiento & desarrollo , Dieta/veterinaria , Rumen/microbiología , Animales , Animales Recién Nacidos , Animales Lactantes , Bacterias/clasificación , Bacterias/genética , Bacteroides/clasificación , Bacteroides/genética , Bacteroides/crecimiento & desarrollo , Bacteroidetes/clasificación , Bacteroidetes/genética , Bacteroidetes/crecimiento & desarrollo , Bovinos , Calostro/microbiología , ADN Bacteriano/química , ADN Ribosómico/química , Dieta/clasificación , Ácidos Grasos Volátiles/análisis , Femenino , Fusobacterium/clasificación , Fusobacterium/genética , Fusobacterium/crecimiento & desarrollo , Masculino , Pasteurellaceae/clasificación , Pasteurellaceae/genética , Pasteurellaceae/crecimiento & desarrollo , Prevotella/clasificación , Prevotella/genética , Prevotella/crecimiento & desarrollo , Proteobacteria/clasificación , Proteobacteria/genética , Proteobacteria/crecimiento & desarrollo , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Rumen/enzimología , Rumen/metabolismo , Streptococcus/clasificación , Streptococcus/genética , Streptococcus/crecimiento & desarrollo , DesteteRESUMEN
OBJECTIVE: To compare the abundance of 16S rRNA gene of intestinal Fusobacterium and butyrate-producing bacteria in patients with colorectal adenomas patients and colorectal cancer and to reveal the correlation between the target bacteria and the development of colorectal cancer. METHODS: Feces were collected from colorectal cancer patients (n=19), colorectal adenomas patients (n=12) and healthy subjects (n=19). Bacteria genome DNA from the fecal samples was used to quantitate the Fusobacterium, two butyrate-producing bacteria Eubacterium rectal, Faecalibacterium prausnitzii and total bacteria by real-time polymerase chain reaction. Then the variation of the target bacteria among different groups were assayed using Mann-Whitney U test. RESULTS: The abundance of Fusobacterium was significantly higher in colorectal cancer patients than that in healthy subjects (P = 0.000) and colorectal adenomas patients (P = 0.013), and it was significantly higher in colorectal cancer patients than that in colorectal adenomas patients (P = 0.002). F. prausnitzii was significantly lower in colorectal adenomas patients compared to healthy subjects (P = 0.033). The total bacteria count was significantly lower in the colorectal adenomas samples than that in the healthy samples (P = 0.002). There was no significantly difference of E. rectal between the three groups. CONCLUSIONS: The shifts in the colonic bacterial population may potentially contribute to the development of colorectal cancer.
Asunto(s)
Adenoma/microbiología , Butiratos/metabolismo , Neoplasias Colorrectales/microbiología , Fusobacterium/metabolismo , Intestinos/microbiología , Bacterias/clasificación , Bacterias/genética , Bacterias/aislamiento & purificación , Bacterias/metabolismo , Heces/microbiología , Femenino , Fusobacterium/clasificación , Fusobacterium/genética , Fusobacterium/aislamiento & purificación , Humanos , Masculino , Persona de Mediana EdadRESUMEN
Esophageal carcinoma (ESCA) is a leading cause of cancer-related death worldwide, and certain oral and intestinal pathogens have been associated with cancer development and progression. We asked if esophageal microbiomes had shared alterations that could provide novel biomarkers for ESCA risk. We extracted DNA from tumor and non-tumor tissue of 212 patients in the NCI-MD case control study and sequenced the 16S rRNA gene (V3-4), with TCGA ESCA RNA-seq (n = 172) and WGS (n = 123) non-human reads used as validation. We identified four taxa, Campylobacter, Prevotella, Streptococcus, and Fusobacterium as highly enriched in esophageal cancer across all cohorts. Using SparCC, we discovered that Fusobacterium and Prevotella were also co-enriched across all cohorts. We then analyzed immune cell infiltration to determine if these dysbiotic taxa were associated with immune signatures. Using xCell to obtain predicted immune infiltrates, we identified a depletion of megakaryocyte-erythroid progenitor (MEP) cells in tumors with presence of any of the four taxa, along with enrichment of platelets in tumors with Campylobactor or Fusobacterium. Taken together, our results suggest that intratumoral presence of these co-occurring bacterial genera may confer tumor promoting immune alterations that allow disease progression in esophageal cancer.