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1.
J Biol Chem ; 295(23): 7826-7838, 2020 06 05.
Artículo en Inglés | MEDLINE | ID: mdl-32107312

RESUMEN

Human aspartate/asparagine-ß-hydroxylase (AspH) is a 2-oxoglutarate (2OG)-dependent oxygenase that catalyzes the post-translational hydroxylation of Asp and Asn residues in epidermal growth factor-like domains (EGFDs). Despite its biomedical significance, studies on AspH have long been limited by a lack of assays for its isolated form. Recent structural work has revealed that AspH accepts substrates with a noncanonical EGFD disulfide connectivity (i.e. the Cys 1-2, 3-4, 5-6 disulfide pattern). We developed stable cyclic thioether analogues of the noncanonical EGFD AspH substrates to avoid disulfide shuffling. We monitored their hydroxylation by solid-phase extraction coupled to MS. The extent of recombinant AspH-catalyzed cyclic peptide hydroxylation appears to reflect levels of EGFD hydroxylation observed in vivo, which vary considerably. We applied the assay to determine the kinetic parameters of human AspH with respect to 2OG, Fe(II), l-ascorbic acid, and substrate and found that these parameters are in the typical ranges for 2OG oxygenases. Of note, a relatively high Km for O2 suggested that O2 availability may regulate AspH activity in a biologically relevant manner. We anticipate that the assay will enable the development of selective small-molecule inhibitors for AspH and other human 2OG oxygenases.


Asunto(s)
Ácido Aspártico/metabolismo , Proteínas de Unión al Calcio/metabolismo , Proteínas de la Membrana/metabolismo , Oxigenasas de Función Mixta/metabolismo , Proteínas Musculares/metabolismo , Oxígeno/metabolismo , Proteínas de Unión al Calcio/aislamiento & purificación , Humanos , Hidroxilación , Cinética , Espectrometría de Masas , Proteínas de la Membrana/aislamiento & purificación , Oxigenasas de Función Mixta/aislamiento & purificación , Estructura Molecular , Proteínas Musculares/aislamiento & purificación , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Extracción en Fase Sólida
2.
Cancer Invest ; 38(1): 37-51, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31868021

RESUMEN

Regucalcin plays a pivotal role as a suppressor of human carcinogenesis, and downregulation of regucalcin expression may contribute to the promotion of human osteosarcoma. Overexpression of regucalcin suppressed the proliferation of Saos-2 human osteosarcoma cells in vitro and decreased the protein levels of multiple signaling components, transcription factors, and tumor suppressors. Interestingly, extracellular regucalcin repressed colony formation and proliferation of Saos-2 cells, and reduced the protein levels of multiple signaling components, cell cycle inhibitor, and various transcription factors. Thus, regucalcin suppressed the growth of human osteosarcoma cells, providing a novel strategy with the gene therapy for treatment of osteosarcoma.


Asunto(s)
Neoplasias Óseas/terapia , Proteínas de Unión al Calcio/metabolismo , Regulación Neoplásica de la Expresión Génica , Terapia Genética/métodos , Péptidos y Proteínas de Señalización Intracelular/metabolismo , Osteosarcoma/terapia , Animales , Neoplasias Óseas/genética , Neoplasias Óseas/patología , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/aislamiento & purificación , Hidrolasas de Éster Carboxílico/metabolismo , Línea Celular Tumoral , Proliferación Celular , Humanos , Péptidos y Proteínas de Señalización Intracelular/genética , Hígado , Osteosarcoma/genética , Osteosarcoma/patología , Pronóstico , Ratas , Transfección
3.
Protein Expr Purif ; 167: 105550, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31811913

RESUMEN

The Clostridium perfringens alpha toxin (CPA), encoded by the plc gene, is the causative pathogen of gas gangrene, which is a lethal infection. In this study, we used an E. coli system for the efficient production of recombinant proteins and developed a bicistronic design (BCD) expression construct consisting of two copies of the C-terminal (247-370) domain of the alpha toxin (CPA-C) in the first cistron, followed by Cholera Toxin B (CTB) linked with another two copies of CPA-C in the second cistron that is controlled by a single promoter. Rabbits were immunized twice with purified proteins (rCPA-C rCTB-CPA-C) produced in the BCD expression system, with an inactivated recombinant E. coli vaccine (RE), C. perfringens formaldehyde-inactivated alpha toxoid (FA-CPA) and C. perfringensl-lysine/formaldehyde alpha toxoid (LF-CPA) vaccines. Following the second vaccination, 0.1 mL of pooled sera of the RE-vaccinated rabbits could neutralize 12× mouse LD100 (100% lethal dose) of CPA, while that of the rCPA-C rCTB-CPA-C-vaccinated rabbits could neutralize 6× mouse LD100 of CPA. Antibody titers against CPA were also assessed by ELISA, reaching titers as high as 1:2048000 in the RE group; this was significantly higher compared to the C. perfringens alpha toxoid vaccinated groups (FA-CPA and LF-CPA). Rabbits from all vaccinated groups were completely protected from a 2× rabbit LD100 of CPA challenge. These results demonstrate that the recombinant proteins are able to induce a strong immune responses, indicating that they may be potentially utilized as targets for novel vaccines specifically against the C. perfringens alpha toxin.


Asunto(s)
Anticuerpos Antibacterianos/sangre , Toxinas Bacterianas , Proteínas de Unión al Calcio , Proteínas Recombinantes , Fosfolipasas de Tipo C , Animales , Toxinas Bacterianas/biosíntesis , Toxinas Bacterianas/genética , Toxinas Bacterianas/inmunología , Toxinas Bacterianas/aislamiento & purificación , Vacunas Bacterianas , Proteínas de Unión al Calcio/biosíntesis , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/inmunología , Proteínas de Unión al Calcio/aislamiento & purificación , Toxina del Cólera/genética , Clonación Molecular , Clostridium perfringens/genética , Clostridium perfringens/metabolismo , Escherichia coli/genética , Ratones , Conejos , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/aislamiento & purificación , Fosfolipasas de Tipo C/biosíntesis , Fosfolipasas de Tipo C/genética , Fosfolipasas de Tipo C/inmunología , Fosfolipasas de Tipo C/aislamiento & purificación , Vacunación/métodos
4.
Andrologia ; 51(7): e13287, 2019 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30972801

RESUMEN

The investigation of the interacting proteins with testis-specific calcium-binding protein CBP86-IV (CABYR) was carried out in human spermatozoa. The total RNA from human spermatozoa was extracted, and the ORF sequence of TSCBP86-IV gene was amplified and cloned into expression vector pET-28a. The positive recombinant clones were transformed into Escherichia coli strain BL21 (DE3) to express fusion protein. Then, co-immunoprecipitation (Co-IP) of TSCBP86-IV was performed in BL21 cell lysate expressing CBP86-IV recombinant protein. The immune complex was captured and identified by mass spectrometry. Reverse Co-IP of potential interacting proteins was performed in human sperm cell lysate. The potential protein interactions were confirmed by yeast two-hybrid system. Thirteen proteins were successfully identified in immune complex from E. coli cell lysate. Phosphoglycerate kinase 2 (PGK2) further showed positive results both in reverse Co-IP and yeast two-hybrid experiments and was confirmed to be interacted with TSCBP86-IV in human sperm cells.


Asunto(s)
Proteínas de Unión al Calcio/metabolismo , Isoenzimas/metabolismo , Fosfoglicerato Quinasa/metabolismo , Espermatozoides/metabolismo , Adulto , Proteínas de Unión al Calcio/aislamiento & purificación , Humanos , Masculino , Unión Proteica , Proteínas Recombinantes , Semen , Técnicas del Sistema de Dos Híbridos , Adulto Joven
5.
Allergol Immunopathol (Madr) ; 47(4): 357-364, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30770138

RESUMEN

INTRODUCTION: Amaranthus retroflexus (Redroot Pigweed) is one of the main sources of allergenic pollens in temperate areas. Polcalcin is a well-known panallergen involved in cross-reactivity between different plants. The aim of this study was the molecular cloning and expression of polcalcin, as well as evaluating its IgE-reactivity with A. retroflexus sensitive patients' sera. METHODS: Allergenic extract was prepared from A. retroflexus pollen and the IgE-reactivity profile was determined by ELISA and immunoblotting using sera from twenty A. retroflexus sensitive patients. Polcalcin-coding sequence was amplified by conventional PCR method and the product was inserted into pET-21b(+) vector. The recombinant protein was expressed in E. coli BL21 and purified by metal affinity chromatography. The IgE-binding capability of the recombinant protein was analyzed by ELISA and immunoblotting assays, and compared with crude extract. RESULTS: Of 20 skin prick test positive patients, 17 patients were positive in IgE-specific ELISA. Western blotting confirmed that approximately 53% of ELISA positive patients reacted with 10kDa protein in crude extract. The A. retroflexus polcalcin gene, encoding to 80 amino acid residues was cloned and expressed as a soluble protein and designated as Ama r 3. The recombinant polcalcin showed rather identical IgE-reactivity in ELISA and western blotting with 10kDa protein in crude extract. These results were confirmed by inhibition methods, too. CONCLUSION: The recombinant form of A. retroflexus polcalcin (Ama r 3) could be easily produced in E. coli in a soluble form and shows rather similar IgE-reactivity with its natural counterpart.


Asunto(s)
Alérgenos/inmunología , Amaranthus/inmunología , Antígenos de Plantas/inmunología , Proteínas de Unión al Calcio/inmunología , Polen/inmunología , Rinitis Alérgica Estacional/inmunología , Adolescente , Adulto , Alérgenos/aislamiento & purificación , Antígenos de Plantas/aislamiento & purificación , Proteínas de Unión al Calcio/aislamiento & purificación , Clonación Molecular , Reacciones Cruzadas , Escherichia coli/genética , Femenino , Expresión Génica , Humanos , Inmunoglobulina E/metabolismo , Masculino , Extractos Vegetales , Proteínas Recombinantes/aislamiento & purificación , Pruebas Cutáneas , Adulto Joven
6.
BMC Microbiol ; 18(1): 34, 2018 04 16.
Artículo en Inglés | MEDLINE | ID: mdl-29661152

RESUMEN

BACKGROUND: Staphylococcus aureus cell wall anchored Serine Aspartate repeat containing protein D (SdrD) is a member of the microbial surface component recognising adhesive matrix molecules (MSCRAMMs). It is involved in the bacterial adhesion and virulence. However the extent of genetic variation in S. aureus sdrD gene within isolates from healthy carriers are not known. The aim of this study was to evaluate allelic variation of the sdrD gene among S. aureus from healthy nasal carriers. RESULTS: The sdrD A region from 48 S. aureus isolates from healthy carriers were analysed and classified into seven variants. Variations in the sdrD A region were concentrated in the N2 and N3 subdomains. Sequence analysis of the entire sdrD gene of representative isolates revealed variations in the SD repeat and the EF motifs of the B repeat. In silico structural modelling indicates that there are no differences in the SdrD structure of the 7 variants. Variable amino acid residues mapped onto the 3D structure revealed that the variations are surface located, exist within the groove between the N2-N3 subdomains and distributed mainly on the N3 subdomain. Comparison of adhesion to keratinocytes in an in vitro cell adhesion assay, using NCTC 8325-4∆sdrD strains expressing the various sdrD gene variants, indicated a significant difference between only two complements while others showed no major difference in their adhesion. CONCLUSIONS: This study provides evidence of sequence variations across the different domains of SdrD from S. aureus isolated from healthy nasal carriers. Proper understanding of these variations is necessary in the study of S. aureus pathogenesis.


Asunto(s)
Proteínas Bacterianas/genética , Proteínas de Unión al Calcio/genética , Variación Genética , Nariz/microbiología , Staphylococcus aureus/genética , Secuencia de Aminoácidos , Adhesión Bacteriana , Proteínas Bacterianas/clasificación , Proteínas Bacterianas/aislamiento & purificación , Proteínas de Unión al Calcio/clasificación , Proteínas de Unión al Calcio/aislamiento & purificación , Línea Celular , Humanos , Queratinocitos/microbiología , Modelos Moleculares , Tipificación de Secuencias Multilocus , Filogenia , Conformación Proteica , Dominios Proteicos , Infecciones Estafilocócicas/microbiología , Staphylococcus aureus/aislamiento & purificación , Virulencia/genética
7.
Biotechnol Appl Biochem ; 64(1): 43-49, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26592736

RESUMEN

Nesfatin-1 is a newly discovered satiety molecule expressed mainly in the hypothalamic nuclei. It suppresses both short-term and long-term appetite. Six synthetic deoxyoligonucleotides overlapped by PCR encoding nesfatin-1 were cloned into a pET28a vector after the hexa-histidine-tagged multiple cloning sites sequence with an enterokinase recognition site incorporated in-between. The recombinant plasmid was transformed into Escherichia coli strain Rosetta to express the fusion protein, which constituted 27% of the total cell proteins. After purified by Ni-sepharose affinity chromatography, the fusion protein was treated with enterokinase to release nesfatin-1. The nesfatin-1 sample was further purified with reverse-phase high performance liquid chromatography (HPLC), and its molecular weight was determined by mass spectrometry. The biological activities of recombinant nesfatin-1 were also assessed using in vivo animal models. The method described here promises to produce about 8 mg biologically active nesfatin-1 with homogeneity over 98% from 1-L shaking flask culture of E. coli, which can be considered as an easy and cost-effective way to synthesize nesfatin-1.


Asunto(s)
Proteínas de Unión al Calcio , Proteínas de Unión al ADN , Escherichia coli/química , Escherichia coli/metabolismo , Expresión Génica , Proteínas del Tejido Nervioso , Animales , Proteínas de Unión al Calcio/biosíntesis , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Proteínas de Unión al ADN/biosíntesis , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/aislamiento & purificación , Escherichia coli/genética , Ratones , Proteínas del Tejido Nervioso/biosíntesis , Proteínas del Tejido Nervioso/química , Proteínas del Tejido Nervioso/genética , Proteínas del Tejido Nervioso/aislamiento & purificación , Nucleobindinas , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
8.
Reprod Domest Anim ; 52(5): 865-872, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28543743

RESUMEN

Regucalcin (RGN) is a calcium-regulating, anti-apoptotic, antioxidative and antiproliferative multifunctional protein predominantly seen in liver and kidney. All these functions are very crucial during spermatogenesis and sperm maturation process until fertilization of the ovum. Although many studies have reported the wide distribution of regucalcin in the male reproductive tract of the rat, human and bovine, its presence in spermatozoa is yet to be demonstrated wherein calcium has a pivotal role in the transport, capacitation, acrosomal reaction and further fusion with ova. Here, we detected the expression of regucalcin mRNA and protein in buffalo spermatozoa using real-time PCR and Western blot, respectively. The study detected two new regucalcin isoforms of 44 kDa and 48 kDa size along with the reported 34-kDa, 28-kDa and 24-kDa isoforms, wherein the 34-kDa isoform was found to be membrane associated in spermatozoa. Further, immunocytochemistry study localized the regucalcin protein in the acrosomal region of the caudal and ejaculated buffalo spermatozoa while it was detected in both cytoplasm and acrosomal region of testicular spermatozoa. This discovery of RGN in spermatozoa and localization in the acrosomal region will help to focus researchers to see its role in calcium-related functions like capacitation, acrosomal reaction and membrane fusion. Overall, regucalcin may be a new fertility marker in buffalo and can be utilized for infertility treatments.


Asunto(s)
Búfalos/metabolismo , Proteínas de Unión al Calcio/aislamiento & purificación , Proteínas de Unión al Calcio/metabolismo , Espermatozoides/metabolismo , Acrosoma/metabolismo , Animales , Proteínas de Unión al Calcio/química , Masculino , Isoformas de Proteínas , ARN Mensajero , Testículo/metabolismo
9.
Mol Genet Genomics ; 291(2): 971-88, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26786939

RESUMEN

Caleosins are a class of Ca(2+) binding proteins that appear to be ubiquitous in plants. Some of the main proteins embedded in the lipid monolayer of lipid droplets, caleosins, play critical roles in the degradation of storage lipids during germination and in lipid trafficking. Some of them have been shown to have histidine-dependent peroxygenase activity, which is believed to participate in stress responses in Arabidopsis. In the model plant Arabidopsis thaliana, caleosins have been examined extensively. However, little is known on a genome-wide scale about these proteins in other members of the Brassicaceae. In this study, 51 caleosins in Brassica plants and Arabidopsis lyrata were investigated and analyzed in silico. Among them, 31 caleosins, including 7 in A. lyrata, 11 in Brassica oleracea and 13 in Brassica napus, are herein identified for the first time. Segmental duplication was the main form of gene expansion. Alignment, motif and phylogenetic analyses showed that Brassica caleosins belong to either the H-family or the L-family with different motif structures and physicochemical properties. Our findings strongly suggest that L-caleosins are evolved from H-caleosins. Predicted phosphorylation sites were differentially conserved in H-caleosin and L-caleosins, respectively. 'RY-repeat' elements and phytohormone-related cis-elements were identified in different caleosins, which suggest diverse physiological functions. Gene structure analysis indicated that most caleosins (38 out of 44) contained six exons and five introns and their intron phases were highly conserved. Structurally integrated caleosins, such as BrCLO3-3 and BrCLO4-2, showed high expression levels and may have important roles. Some caleosins, such as BrCLO2 and BoCLO8-2, lost motifs of the calcium binding domain, proline knot, potential phosphorylation sites and haem-binding sites. Combined with their low expression, it is suggested that these caleosins may have lost function.


Asunto(s)
Arabidopsis/genética , Brassica/genética , Proteínas de Unión al Calcio/genética , Evolución Molecular , Proteínas de Plantas/genética , Secuencia de Aminoácidos/genética , Proteínas de Unión al Calcio/biosíntesis , Proteínas de Unión al Calcio/aislamiento & purificación , Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Germinación/genética , Filogenia , Proteínas de Plantas/biosíntesis , Proteínas de Plantas/aislamiento & purificación
10.
Protein Expr Purif ; 124: 48-54, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-27235176

RESUMEN

Centrins are acidic proteins, present in all eukaryotes to perform imperative roles in centrosome positioning and segregation. Existing methods for the purification of centrins for biophysical studies involves either multiple steps or yields protein with an affinity tag, which pins additional tag-cleavage step. Therefore, we have made an attempt to develop a simple and single step method for protein purification. We have performed categorical evaluation of existing methods, and describe a one-step procedure based on cleavable Intein-tag, which can be utilized for routine preparation of any isoform of centrins. Since human Centrin-1 and Centrin-2 are devoid of Trp, we exploit this feature to assess the purity of the protein using Tyr fluorescence; an essential point ignored generally. In addition, we report important spectral and hydrodynamic characteristics of human Centrin-1, accounting that HsCentrin-1 has moderate affinity for Ca(2+). Centrin-1 does not gain structure as seen by far- and near-UV circular dichroism, rather there is a loss of ellipticity, though inconsiderable upon binding Ca(2+).


Asunto(s)
Proteínas de Unión al Calcio , Calcio/química , Proteínas de Ciclo Celular , Expresión Génica , Proteínas de Unión al Calcio/biosíntesis , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Proteínas de Ciclo Celular/biosíntesis , Proteínas de Ciclo Celular/química , Proteínas de Ciclo Celular/genética , Proteínas de Ciclo Celular/aislamiento & purificación , Escherichia coli/genética , Escherichia coli/metabolismo , Humanos , Dominios Proteicos , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación
11.
Exp Parasitol ; 170: 109-115, 2016 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-27693219

RESUMEN

FH22 has been previously identified as a calcium-binding protein from the common liver fluke, Fasciola hepatica. It is part of a family of at least four proteins in this organism which combine an EF-hand containing N-terminal domain with a C-terminal dynein light chain-like domain. Here we report further biochemical properties of FH22, which we propose should be renamed FhCaBP1 for consistency with other family members. Molecular modelling predicted that the two domains are linked by a flexible region and that the second EF-hand in the N-terminal domain is most likely the calcium ion binding site. Native gel electrophoresis demonstrated that the protein binds both calcium and manganese ions, but not cadmium, magnesium, strontium, barium, cobalt, copper(II), iron (II), nickel, zinc, lead or potassium ions. Calcium ion binding alters the conformation of the protein and increases its stability towards thermal denaturation. FhCaBP1 is a dimer in solution and calcium ions have no detectable effect on the protein's ability to dimerise. FhCaBP1 binds to the calmodulin antagonists trifluoperazine and chlorpromazine. Overall, the FhCaBP1's biochemical properties are most similar to FhCaBP2 a fact consistent with the close sequence and predicted structural similarity between the two proteins.


Asunto(s)
Proteínas de Unión al Calcio/química , Dineínas/química , Fasciola hepatica/metabolismo , Proteínas del Helminto/química , Animales , Calcio/metabolismo , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Proteínas de Unión al Calcio/metabolismo , Calmodulina/antagonistas & inhibidores , Clorpromazina/metabolismo , Electroforesis en Gel de Poliacrilamida , Fasciola hepatica/genética , Expresión Génica , Proteínas del Helminto/genética , Proteínas del Helminto/aislamiento & purificación , Proteínas del Helminto/metabolismo , Manganeso/metabolismo , Conformación Proteica , Multimerización de Proteína , Trifluoperazina/metabolismo
12.
J Proteome Res ; 14(11): 4486-501, 2015 Nov 06.
Artículo en Inglés | MEDLINE | ID: mdl-26401960

RESUMEN

Analysis of the cerebrospinal fluid (CSF) proteome has proven valuable to the study of neurodegenerative disorders. To identify new protein/pathway alterations and candidate biomarkers for amyotrophic lateral sclerosis (ALS), we performed comparative proteomic profiling of CSF from sporadic ALS (sALS), healthy control (HC), and other neurological disease (OND) subjects using label-free liquid chromatography-tandem mass spectrometry (LC-MS/MS). A total of 1712 CSF proteins were detected and relatively quantified by spectral counting. Levels of several proteins with diverse biological functions were significantly altered in sALS samples. Enrichment analysis was used to link these alterations to biological pathways, which were predominantly related to inflammation, neuronal activity, and extracellular matrix regulation. We then used our CSF proteomic profiles to create a support vector machines classifier capable of discriminating training set ALS from non-ALS (HC and OND) samples. Four classifier proteins, WD repeat-containing protein 63, amyloid-like protein 1, SPARC-like protein 1, and cell adhesion molecule 3, were identified by feature selection and externally validated. The resultant classifier distinguished ALS from non-ALS samples with 83% sensitivity and 100% specificity in an independent test set. Collectively, our results illustrate the utility of CSF proteomic profiling for identifying ALS protein/pathway alterations and candidate disease biomarkers.


Asunto(s)
Enfermedad de Alzheimer/diagnóstico , Esclerosis Amiotrófica Lateral/diagnóstico , Proteínas del Líquido Cefalorraquídeo/aislamiento & purificación , Enfermedad de la Neurona Motora/diagnóstico , Proteoma/aislamiento & purificación , Proteínas Adaptadoras Transductoras de Señales/líquido cefalorraquídeo , Proteínas Adaptadoras Transductoras de Señales/genética , Proteínas Adaptadoras Transductoras de Señales/aislamiento & purificación , Adulto , Enfermedad de Alzheimer/líquido cefalorraquídeo , Enfermedad de Alzheimer/genética , Enfermedad de Alzheimer/patología , Precursor de Proteína beta-Amiloide/líquido cefalorraquídeo , Precursor de Proteína beta-Amiloide/genética , Precursor de Proteína beta-Amiloide/aislamiento & purificación , Esclerosis Amiotrófica Lateral/líquido cefalorraquídeo , Esclerosis Amiotrófica Lateral/genética , Esclerosis Amiotrófica Lateral/patología , Biomarcadores/líquido cefalorraquídeo , Proteínas de Unión al Calcio/líquido cefalorraquídeo , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Estudios de Casos y Controles , Moléculas de Adhesión Celular/líquido cefalorraquídeo , Moléculas de Adhesión Celular/genética , Moléculas de Adhesión Celular/aislamiento & purificación , Proteínas del Líquido Cefalorraquídeo/líquido cefalorraquídeo , Proteínas del Líquido Cefalorraquídeo/genética , Cromatografía Liquida/métodos , Diagnóstico Diferencial , Matriz Extracelular/química , Proteínas de la Matriz Extracelular/líquido cefalorraquídeo , Proteínas de la Matriz Extracelular/genética , Proteínas de la Matriz Extracelular/aislamiento & purificación , Humanos , Inmunoglobulinas/líquido cefalorraquídeo , Inmunoglobulinas/genética , Inmunoglobulinas/aislamiento & purificación , Inflamación , Persona de Mediana Edad , Enfermedad de la Neurona Motora/líquido cefalorraquídeo , Enfermedad de la Neurona Motora/genética , Enfermedad de la Neurona Motora/patología , Proteoma/genética , Proteoma/metabolismo , Proteómica/métodos , Sensibilidad y Especificidad , Máquina de Vectores de Soporte , Sinapsis/genética , Sinapsis/metabolismo , Transmisión Sináptica , Espectrometría de Masas en Tándem/métodos
13.
BMC Microbiol ; 15: 16, 2015 Feb 04.
Artículo en Inglés | MEDLINE | ID: mdl-25648224

RESUMEN

BACKGROUND: Legumes establish with rhizobial bacteria a nitrogen-fixing symbiosis which is of the utmost importance for both plant nutrition and a sustainable agriculture. Calcium is known to act as a key intracellular messenger in the perception of symbiotic signals by both the host plant and the microbial partner. Regulation of intracellular free Ca(2+) concentration, which is a fundamental prerequisite for any Ca(2+)-based signalling system, is accomplished by complex mechanisms including Ca(2+) binding proteins acting as Ca(2+) buffers. In this work we investigated the occurrence of Ca(2+) binding proteins in Mesorhizobium loti, the specific symbiotic partner of the model legume Lotus japonicus. RESULTS: A soluble, low molecular weight protein was found to share several biochemical features with the eukaryotic Ca(2+)-binding proteins calsequestrin and calreticulin, such as Stains-all blue staining on SDS-PAGE, an acidic isoelectric point and a Ca(2+)-dependent shift of electrophoretic mobility. The protein was purified to homogeneity by an ammonium sulfate precipitation procedure followed by anion-exchange chromatography on DEAE-Cellulose and electroendosmotic preparative electrophoresis. The Ca(2+) binding ability of the M. loti protein was demonstrated by (45)Ca(2+)-overlay assays. ESI-Q-TOF MS/MS analyses of the peptides generated after digestion with either trypsin or endoproteinase AspN identified the rhizobial protein as ferredoxin II and confirmed the presence of Ca(2+) adducts. CONCLUSIONS: The present data indicate that ferredoxin II is a major Ca(2+) binding protein in M. loti that may participate in Ca(2+) homeostasis and suggest an evolutionarily ancient origin for protein-based Ca(2+) regulatory systems.


Asunto(s)
Proteínas de Unión al Calcio/metabolismo , Calcio/metabolismo , Ferredoxinas/metabolismo , Mesorhizobium/enzimología , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/aislamiento & purificación , Precipitación Química , Cromatografía por Intercambio Iónico , Electroforesis , Ferredoxinas/química , Ferredoxinas/aislamiento & purificación , Punto Isoeléctrico , Fijación del Nitrógeno , Espectrometría de Masa por Ionización de Electrospray , Espectrometría de Masas en Tándem
14.
Protein Expr Purif ; 99: 27-34, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-24680733

RESUMEN

Transient transfection of the human HEK293-EBNA1 cell line using polyethyleneimine is widely adopted for recombinant protein production. Whereas high expression of many targets is achieved, purification yields of some highly expressed proteins remain low due to aggregation. We hypothesized that for these proteins the expression rates achieved at standard transfection conditions are too high, causing an overload of the protein folding machinery. Here we present plasmid titration as an efficient method to vary expression rates for the optimization of soluble protein expression. In plasmid titration a dilution series of expression vector mixed with dummy plasmid is transfected in small scale cultures. Application to GFP shows that plasmid titration achieves a wide range of expression levels while maintaining high transfection efficiencies even at 500-fold plasmid dilution. Application of plasmid titration to selected Nod-like receptors (NLRs), which at standard conditions are highly expressed but poorly soluble, delays the onset of NLR aggregation and improves cell viability and the buildup of biomass. The amount of soluble protein depends on the combination of dilution factor and harvest day in a protein specific manner. For NOD1 50-fold plasmid dilution increases the amount of soluble protein approximately 5-fold. Due to its association with chaperones at all dilution factors tested we were unable to purify NOD1 to homogeneity. For NLRC4, which did not associate with chaperones, 10-fold plasmid dilution increased the purification yield 2-fold. This improvement, obtained with minimal effort due to the simplicity of the method, shows that reducing total expression may increase soluble protein yield.


Asunto(s)
Células HEK293/metabolismo , Plásmidos/genética , Agregado de Proteínas/fisiología , Receptores Citoplasmáticos y Nucleares/fisiología , Transfección/métodos , Proteínas Adaptadoras de Señalización CARD/química , Proteínas Adaptadoras de Señalización CARD/genética , Proteínas Adaptadoras de Señalización CARD/aislamiento & purificación , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Muerte Celular , Antígenos Nucleares del Virus de Epstein-Barr/genética , Proteínas Fluorescentes Verdes/genética , Humanos , Polietileneimina , Pliegue de Proteína/efectos de los fármacos , Proteínas Recombinantes/genética , Solubilidad
15.
Food Chem ; 451: 139268, 2024 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-38663247

RESUMEN

Calcium-chelating peptides were found in Pacific cod bone, but their binding structure and properties have not been elucidated. Novel calcium-binding peptides were isolated by hydroxyapatite affinity chromatography (HAC), and their binding structure and properties were investigated by isothermal titration calorimetry (ITC), multispectral techniques, and mass spectrometry. Based on multiple purifications, the calcium binding capacity (CBC) of Pacific cod bone peptides (PBPs) was increased from 1.71 ± 0.15 µg/mg to 7.94 ± 1.56 µg/mg. Peptides with a molecular weight of 1-2 kDa are closely correlated with CBC. After binding to calcium, the secondary structure of peptides transitioned from random coil to ß-sheet, resulting in a loose and porous microstructure. Hydrogen bonds, electrostatic interaction, and hydrophobic interaction contribute to the formation of peptide­calcium complexes. The F21 contained 42 peptides, with repeated "GE" motif. Differential structure analysis provides a theoretical basis for the targeted preparation of high CBC peptides.


Asunto(s)
Huesos , Calcio , Durapatita , Proteínas de Peces , Péptidos , Animales , Durapatita/química , Huesos/química , Calcio/química , Proteínas de Peces/química , Péptidos/química , Péptidos/aislamiento & purificación , Cromatografía de Afinidad , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/metabolismo , Proteínas de Unión al Calcio/aislamiento & purificación , Unión Proteica , Secuencia de Aminoácidos , Gadiformes , Estructura Secundaria de Proteína
16.
J Proteome Res ; 12(2): 647-56, 2013 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-23268739

RESUMEN

Occupational asthma is a major chronic health dilemma among workers involved in the seafood industry. Several proteins notoriously known to cause asthma have been reported in different seafood. This work involves the application of an allergenomics strategy to study the most potent allergens of northern shrimp. The proteins were extracted from shrimp tissue and profiled by gel electrophoresis. Allergenic proteins were identified based on their reactivity to patient sera and were structurally identified using tandem mass spectrometry. Northern shrimp tropomyosin, arginine kinase, and sarcoplasmic calcium-binding protein were found to be the most significant allergens. Multiple proteolytic enzymes enabled 100% coverage of the sequence of shrimp tropomyosin by tandem mass specrometry. Only partial sequence coverage was obtained, however, for the shrimp allergen arginine kinase. Signature peptides, for both tropomyosin and arginine kinase, were assigned and synthesized for use in developing the multiple reaction monitoring tandem mass spectrometric method. Subsequently, air samples were collected from a shrimp processing plant and two aerosolized proteins quantified using tandem mass specrometry. Allergens were detected in all areas of the plant, reaching levels as high as 375 and 480 ng/m(3) for tropomyosine and arginine kinase, respectively. Tropomyosine is much more abundant than arginine kinase in shrimp tissues, so the high levels of arginine kinase suggest it is more easily aerosolized. The present study shows that mass spectrometric analysis is a sensitive and accurate tool in identifying and quantifying aerosolized allergens.


Asunto(s)
Alérgenos/aislamiento & purificación , Arginina Quinasa/aislamiento & purificación , Proteínas de Artrópodos/aislamiento & purificación , Asma Ocupacional/prevención & control , Proteínas de Unión al Calcio/aislamiento & purificación , Penaeidae/química , Tropomiosina/aislamiento & purificación , Aerosoles/química , Secuencia de Aminoácidos , Animales , Arginina Quinasa/química , Humanos , Datos de Secuencia Molecular , Proteolisis , Proteómica , Retículo Sarcoplasmático/química , Sensibilidad y Especificidad , Espectrometría de Masas en Tándem , Tropomiosina/química
17.
Biomacromolecules ; 14(5): 1564-71, 2013 May 13.
Artículo en Inglés | MEDLINE | ID: mdl-23495872

RESUMEN

Nucleus pulposus from the porcine intervertebral disc was separated chromatographically to discover substrates of microbial transglutaminase. Highly purified proteins were prepared, among them type II collagen, the major protein of the nucleus pulposus. Determination of substrates was performed by transglutaminase-mediated incorporation of biotinylated probes displaying several glutamine and lysine donor proteins. Type II collagen was only labeled if smaller nucleus pulposus proteins were present. One of the modulating proteins was serotransferrin, a lysine donor substrate of bacterial transglutaminase. An additional substrate was the carboxy-terminal propeptide of type II collagen, chondrocalcin. Chondrocalcin, a regulator of type II collagen fibrillogenesis, occurs abundantly in juvenile cartilage and nucleus pulposus. Accordingly, the protein may be regarded as an excellent additive for the preparation of injectable stem cells in nucleus pulposus-like matrices cross-linked by microbial transglutaminase.


Asunto(s)
Proteínas Bacterianas/química , Proteínas de Unión al Calcio/aislamiento & purificación , Cartílago/química , Colágeno Tipo II/aislamiento & purificación , Disco Intervertebral/química , Streptomyces/química , Transferrina/química , Transglutaminasas/química , Secuencia de Aminoácidos , Animales , Sitios de Unión , Proteínas de Unión al Calcio/química , Colágeno Tipo II/química , Datos de Secuencia Molecular , Unión Proteica , Streptomyces/enzimología , Especificidad por Sustrato , Porcinos , Ingeniería de Tejidos , Andamios del Tejido , Transferrina/aislamiento & purificación
18.
Protein Expr Purif ; 75(2): 186-91, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-20732425

RESUMEN

Combinatorial libraries offer an attractive approach towards exploring protein sequence, structure and function. Although several strategies introduce sequence diversity, the likelihood of identifying proteins with novel functions is increased when the library of genes encodes for folded and soluble structures. Here we present the first application of the binary patterning approach of combinatorial protein library design to the unique central linker region of the highly-conserved protein, calmodulin (CaM). We show that this high-quality approach translates very well to the CaM protein scaffold: all library members over-express and are functionally diverse, having a range of conformations in the presence and absence of calcium as determined by circular dichroism spectroscopy. Collectively, these data support that the binary patterning approach, when applied to the highly-conserved protein fold, can yield large collections of folded, soluble and highly-expressible proteins.


Asunto(s)
Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/metabolismo , Calcio/metabolismo , Calmodulina , Técnicas Químicas Combinatorias/métodos , Biblioteca de Péptidos , Ingeniería de Proteínas/métodos , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Secuencia de Aminoácidos , Animales , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Calmodulina/química , Calmodulina/genética , Calmodulina/metabolismo , Dicroismo Circular , Clonación Molecular , Electroforesis en Gel de Poliacrilamida , Escherichia coli , Datos de Secuencia Molecular , Conformación Proteica , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Homología de Secuencia de Aminoácido
19.
Protein Expr Purif ; 77(2): 207-13, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21300155

RESUMEN

The alpha and epsilon toxins are 2 of the 4 major lethal toxins of the pathogen Clostridium perfringens. In this study, the expression of the epsilon toxin (etx) gene of C. perfringens was optimized by replacing rare codons with high-frequency codons, and the optimized gene was synthesized using overlapping PCR. Then, the etx gene or the alpha-toxin gene (cpa) was individually inserted into the pTIG-Trx expression vector with a hexahistidine tag and a thioredoxin (Trx) to facilitate their purification and induce the expression of soluble proteins. The recombinant alpha toxin (rCPA) and epsilon toxin (rETX) were highly expressed as soluble forms in the recipient Escherichia coli BL21 strain, respectively. The rCPA and rETX were purified using Ni(2+)-chelating chromatography and size-exclusion chromatography. And the entire purification process recovered about 40% of each target protein from the starting materials. The purified target toxins formed single band at about 42kDa (rCPA) or 31kDa (rETX) in sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and their functional activity was confirmed by bioactivity assays. We have shown that the production of large amounts of soluble and functional proteins by using the pTIG-Trx vector in E. coli is a good alternative for the production of native alpha and epsilon toxins and could also be useful for the production of other toxic proteins with soluble forms.


Asunto(s)
Proteínas Bacterianas/metabolismo , Toxinas Bacterianas/metabolismo , Proteínas de Unión al Calcio/metabolismo , Proteínas Recombinantes de Fusión/metabolismo , Fosfolipasas de Tipo C/metabolismo , Animales , Proteínas Bacterianas/genética , Proteínas Bacterianas/aislamiento & purificación , Toxinas Bacterianas/genética , Toxinas Bacterianas/aislamiento & purificación , Secuencia de Bases , Bioensayo , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/aislamiento & purificación , Línea Celular , Cromatografía de Afinidad , Cromatografía en Gel , Clonación Molecular , Clostridium perfringens/química , Perros , Electroforesis en Gel de Poliacrilamida , Eritrocitos , Escherichia coli , Vectores Genéticos/metabolismo , Hemólisis , Histidina/metabolismo , Ratones , Datos de Secuencia Molecular , Oligopéptidos/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/aislamiento & purificación , Solubilidad , Tiorredoxinas/genética , Tiorredoxinas/metabolismo , Fosfolipasas de Tipo C/genética , Fosfolipasas de Tipo C/aislamiento & purificación
20.
Fish Shellfish Immunol ; 30(2): 700-5, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21195772

RESUMEN

To understand the role of calcium-binding proteins of invertebrates in immunological response, amphioxus sarcoplasmic calcium-binding protein (SCP) was investigated in the present study. Following gene cloning, recombinant protein expression and purification and antibody preparation, the expression and alteration of SCP in the response to bacterial challenge were detected using Western blotting. SCP was not detected in the branchia, humoral fluid, gonad or in the gut of wounded animals, but it was abundant in muscle and appeared in the gut of healthy animals using Vibrio parahaemolyticus immunization and challenge. Furthermore, whether gut SCP possessed anamnestic response was investigated using cross-immune challenge between Gram-positive and -negative bacteria. Gut SCP showed stronger anamnestic activity or pattern-recognition in response to Gram-negative bacterium V. parahaemolyticus than Gram-positive bacterium Staphylococcus aureus. The response was faster and more species-specific to V. parahaemolyticus, whereas it was slower and longer to S. aureus. The reason why the response showed significant difference between Gram-positive and -negative bacteria awaits investigation. These results indicate that gut SCP is an immune-relevant molecule involved in the primary immunological memory or pattern recognition in the amphioxus Branchiostoma belcheri.


Asunto(s)
Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/inmunología , Cordados no Vertebrados/genética , Cordados no Vertebrados/inmunología , Memoria Inmunológica , Patrones de Reconocimiento Fisiológico , Secuencia de Aminoácidos , Animales , Bacterias/inmunología , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/aislamiento & purificación , Cordados no Vertebrados/microbiología , Regulación de la Expresión Génica/inmunología , Intestinos/inmunología , Intestinos/microbiología , Datos de Secuencia Molecular , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Alineación de Secuencia
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