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1.
Clin Infect Dis ; 70(10): 2023-2028, 2020 05 06.
Artigo em Inglês | MEDLINE | ID: mdl-31257413

RESUMO

BACKGROUND: Noroviruses are the major cause of viral gastroenteritis. Disease transmission is difficult to prevent and outbreaks in health-care facilities commonly occur. Contact with infected persons and contaminated environments are believed to be the main routes of transmission. However, noroviruses have recently been found in aerosols and airborne transmission has been suggested. The aim of our study was to investigate associations between symptoms of gastroenteritis and the presence of airborne norovirus, and to investigate the size of norovirus-carrying particles. METHODS: Air sampling was repeatedly performed close to 26 patients with norovirus infections. Samples were analyzed for norovirus RNA by reverse transcription quantitative polymerase chain reaction. The times since each patient's last episodes of vomiting and diarrhea were recorded. Size-separating aerosol particle collection was performed. RESULTS: Norovirus RNA was found in 21 (24%) of 86 air samples from 10 different patients. Only air samples during outbreaks, or before a succeeding outbreak, tested positive for norovirus RNA. Airborne norovirus RNA was also strongly associated with a shorter time period since the last vomiting episode (odds ratio 8.1; P = .04 within 3 hours since the last vomiting episode). The concentrations of airborne norovirus ranged from 5-215 copies/m3, and detectable amounts of norovirus RNA were found in particles <0.95 µm and >4.51 µm. CONCLUSIONS: The results suggest that recent vomiting is the major source of airborne norovirus and imply a connection between airborne norovirus and outbreaks. The presence of norovirus RNA in submicrometre particles indicates that airborne transmission can be an important transmission route.


Assuntos
Infecções por Caliciviridae , Gastroenterite , Norovirus , Infecções por Caliciviridae/epidemiologia , Surtos de Doenças , Gastroenterite/epidemiologia , Hospitais , Humanos , Norovirus/genética
2.
Euro Surveill ; 24(9)2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30862332

RESUMO

In January 2019, a human seasonal reassortant influenza A(H1N2) virus with a novel 7:1 genetic constellation was identified in a 68-year-old female patient with suspected pneumonia. The virus harboured A(H3N2) neuraminidase and remaining genes from A(H1N1)pdm09. The patient recovered after severe illness. No additional cases have been detected. This is the second identified A(H1N2) seasonal reassortant in a human in Europe within 1 year; a previous case was detected in the Netherlands in March 2018.


Assuntos
Vírus da Influenza A Subtipo H1N2/isolamento & purificação , Influenza Humana/diagnóstico , Nasofaringe/virologia , Vírus Reordenados/isolamento & purificação , Idoso , Antivirais/uso terapêutico , Feminino , Humanos , Vírus da Influenza A Subtipo H1N1/genética , Vírus da Influenza A Subtipo H1N2/genética , Vírus da Influenza A Subtipo H3N2/genética , Influenza Humana/tratamento farmacológico , Influenza Humana/virologia , Neuraminidase/genética , Oseltamivir/uso terapêutico , Reação em Cadeia da Polimerase , Vírus Reordenados/genética , Estações do Ano , Resultado do Tratamento
3.
J Infect Dis ; 211(4): 563-70, 2015 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-25156563

RESUMO

BACKGROUND: Norovirus (NoV) is the predominant cause of foodborne disease outbreaks. Virus contamination may occur during all steps of food processing, from production to preparation and serving. The relative importance of these different routes of contamination is unknown. METHODS: The purpose of this study was to estimate the proportions of outbreaks caused by asymptomatic and symptomatic food handlers (FHs). Reports of foodborne NoV and sapovirus outbreaks (n=191) that occurred over a 7-year period were extracted, reviewed, and categorized according to the available evidence for source of contamination. RESULTS: In 64 (34%) of the outbreaks, contamination from FHs took place during preparation or serving of food. In the majority of these outbreaks (n=41; 64%), the FHs were asymptomatic during food handling. Some had been in contact with ill household members before handling the food and remained asymptomatic; others developed symptoms shortly after or were post-symptomatic. In 51 (27%) of the outbreaks, contamination occurred during production of the food, and in 55 (29%) of the outbreaks, contamination had supposedly occurred after serving a guest at a self-serve buffet. CONCLUSIONS: Guidelines regarding exclusion of FHs where household members suffer from gastroenteritis could limit the number of outbreaks.


Assuntos
Infecções por Caliciviridae/epidemiologia , Portador Sadio/epidemiologia , Surtos de Doenças/estatística & dados numéricos , Manipulação de Alimentos/estatística & dados numéricos , Doenças Transmitidas por Alimentos/epidemiologia , Doenças Transmitidas por Alimentos/virologia , Infecções por Caliciviridae/virologia , Portador Sadio/virologia , Dinamarca/epidemiologia , Microbiologia de Alimentos , Humanos , Norovirus , Estudos Retrospectivos
4.
J Infect Dis ; 212(6): 881-8, 2015 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-25701867

RESUMO

BACKGROUND: Norovirus (NoV) is a major cause of gastroenteritis and hospital outbreaks, leading to substantial morbidity and direct healthcare expenses as well as indirect societal costs. The aim of the study was to estimate the proportion of nosocomial NoV infections among inpatients testing positive for NoV in Denmark, 2002-2010, and to study the distribution of NoV genotypes among inpatients with nosocomial and community-acquired NoV infections, respectively. METHODS: Admission and stool sampling dates from 3656 NoV-infected patients were used to estimate the proportion of nosocomial infections. The associations between nosocomial infection and patient age, sex, and NoV genotype GII.4 were examined. RESULTS: Of the 3656 inpatients, 63% were classified as having nosocomial infections. Among these, 9 capsid and 8 polymerase NoV genotypes were detected, whereas in the smaller group of inpatients with community-acquired infections, 12 capsid and 9 polymerase genotypes were detected. Nosocomial NoV infections were associated with age ≥60 years and infections with genotype GII.4. CONCLUSIONS: The majority of NoV infections in hospitalized patients were nosocomial. Nosocomial infection was mainly associated with older age but also with the specific genotype GII.4. The genotypes in community-acquired NoV infections were more heterogeneous than in nosocomial infections.


Assuntos
Infecções por Caliciviridae/virologia , Infecções Comunitárias Adquiridas/virologia , Infecção Hospitalar/virologia , Genótipo , Norovirus/genética , Adolescente , Adulto , Infecções por Caliciviridae/epidemiologia , Infecções Comunitárias Adquiridas/epidemiologia , Infecção Hospitalar/epidemiologia , Dinamarca/epidemiologia , Fezes/virologia , Feminino , Variação Genética , Hospitais , Humanos , Masculino , Pessoa de Meia-Idade , Norovirus/classificação , Adulto Jovem
5.
Emerg Infect Dis ; 20(7): 1123-31, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24960024

RESUMO

Norovirus (NoV) is a major cause of gastroenteritis. NoV genotype II.4 (GII.4) is the predominant genotype in health care settings but the reason for this finding is unknown. Stool samples containing isolates with a known NoV genotype from 2,109 patients in Denmark (patients consulting a general practitioner or outpatient clinic, inpatients, and patients from foodborne outbreaks) were used to determine genotype distribution in relation to age and setting. NoV GII.4 was more prevalent among inpatients than among patients in community settings or those who became infected during foodborne outbreaks. In community and health care settings, we found an association between infection with GII.4 and increasing age. Norovirus GII.4 predominated in patients ≥ 60 years of age and in health care settings. A larger proportion of children than adults were infected with NoV GII.3 or GII.P21. Susceptibility to NoV infection might depend on patient age and infecting NoV genotype. Cohort studies are warranted to test this hypothesis.


Assuntos
Infecções por Caliciviridae/epidemiologia , Norovirus/genética , Adolescente , Adulto , Criança , Pré-Escolar , Atenção à Saúde , Dinamarca/epidemiologia , Surtos de Doenças , Fezes/virologia , Feminino , Microbiologia de Alimentos , Genótipo , Humanos , Masculino , Pessoa de Meia-Idade , RNA Viral/genética , Características de Residência , Análise de Sequência de DNA , Adulto Jovem
6.
J Virol ; 87(22): 12249-59, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24006446

RESUMO

The aim of this study was to gain insights into the tempo and mode of the evolutionary processes that sustain genetic diversity in coxsackievirus B5 (CVB5) and into the interplay with virus transmission. We estimated phylodynamic patterns with a large sample of virus strains collected in Europe by Bayesian statistical methods, reconstructed the ancestral states of genealogical nodes, and tested for selection. The genealogies estimated with the structural one-dimensional gene encoding the VP1 protein and nonstructural 3CD locus allowed the precise description of lineages over time and cocirculating virus populations within the two CVB5 clades, genogroups A and B. Strong negative selection shaped the evolution of both loci, but compelling phylogenetic data suggested that immune selection pressure resulted in the emergence of the two genogroups with opposed evolutionary pathways. The genogroups also differed in the temporal occurrence of the amino acid changes. The virus strains of genogroup A were characterized by sequential acquisition of nonsynonymous changes in residues exposed at the virus 5-fold axis. The genogroup B viruses were marked by selection of three changes in a different domain (VP1 C terminus) during its early emergence. These external changes resulted in a selective sweep, which was followed by an evolutionary stasis that is still ongoing after 50 years. The inferred population history of CVB5 showed an alternation of the prevailing genogroup during meningitis epidemics across Europe and is interpreted to be a consequence of partial cross-immunity.


Assuntos
Adaptação Biológica , Enterovirus Humano B/classificação , Infecções por Enterovirus/virologia , Evolução Molecular , Variação Genética/genética , Filogenia , Replicação Viral , Sequência de Aminoácidos , Teorema de Bayes , Proteínas do Capsídeo/genética , DNA Viral/genética , Enterovirus Humano B/genética , Infecções por Enterovirus/genética , Humanos , Dados de Sequência Molecular , Reação em Cadeia da Polimerase , Dinâmica Populacional , Seleção Genética , Homologia de Sequência de Aminoácidos , Especificidade da Espécie
7.
Emerg Infect Dis ; 18(1): 7-12, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22261113

RESUMO

The first human virus in the genus Cardiovirus was described in 2007 and named Saffold virus (SAFV). Cardioviruses can cause severe infections of the myocardium and central nervous system in animals, but SAFV has not yet been convincingly associated with disease in humans. To study a possible association between SAFV and infections in the human central nervous system, we designed a real-time PCR for SAFV and tested cerebrospinal fluid (CSF) samples from children <4 years of age. SAFV was detected in 2 children: in the CSF and a fecal sample from 1 child with monosymptomatic ataxia caused by cerebellitis; and in the CSF, blood, and myocardium of another child who died suddenly with no history of illness. Virus from each child was sequenced and shown to be SAFV type 2. These findings demonstrate that SAFV can cause serious invasive infection in children.


Assuntos
Infecções por Cardiovirus/patologia , Cardiovirus/isolamento & purificação , Infecções do Sistema Nervoso Central/virologia , Cardiovirus/classificação , Cardiovirus/genética , Infecções por Cardiovirus/líquido cefalorraquidiano , Infecções do Sistema Nervoso Central/patologia , Pré-Escolar , Evolução Fatal , Fezes/virologia , Feminino , Genoma Viral , Humanos , Lactente , Masculino , Filogenia , Reação em Cadeia da Polimerase em Tempo Real
8.
Infect Dis (Lond) ; 54(4): 283-291, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-34878955

RESUMO

BACKGROUND: Immunosuppressed patients are particularly vulnerable to severe infection from the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), risking prolonged viremia and symptom duration. In this study we describe clinical and virological treatment outcomes in a heterogeneous group of patients with severe immunosuppression due to various causes suffering from COVID-19 infection, who were all treated with convalescent plasma (CCP) along with standard treatment. METHODS: We performed an observational, retrospective case series between May 2020 to March 2021 at three sites in Skåne, Sweden, with a population of nearly 1.4 million people. All patients hospitalized for COVID-19 who received CCP with the indication severe immunosuppression as defined by the treating physician were included in the study (n = 28). RESULTS: In total, 28 severely immunocompromised patients, half of which previously had been treated with rituximab, who had received in-hospital convalescent plasma treatment of COVID-19 were identified. One week after CCP treatment, 13 of 28 (46%) patients had improved clinically defined as a decrease of at least one point at the WHO-scale. Three patients had increased score points of whom two had died. For 12 patients, the WHO-scale was unchanged. CONCLUSION: As one of only few studies on CCP treatment of COVID-19 in hospitalized patients with severe immunosuppression, this study adds descriptive data. The study design prohibits conclusions on safety and efficacy, and the results should be interpreted with caution. Prospective, randomized trials are needed to investigate this further.


Assuntos
COVID-19 , Imunização Passiva , Hospedeiro Imunocomprometido , COVID-19/terapia , Humanos , Estudos Prospectivos , Estudos Retrospectivos , SARS-CoV-2 , Suécia , Soroterapia para COVID-19
9.
Scand J Infect Dis ; 43(8): 642-8, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21526904

RESUMO

BACKGROUND: Since the late 1990s enterovirus 71 (EV71) has caused epidemics of hand, foot and mouth disease with fatal cases especially in the Asian Pacific region. The objective of this study was to describe the clinical and virological features of EV71 infections in Denmark. METHODS: All enterovirus-positive samples in Denmark are submitted to the National Poliovirus Laboratory for typing, and the EV71-positive samples are characterized by sequencing and phylogenetic analysis. Clinical information was gathered for the EV71-positive patients. RESULTS: During 2005-2008, EV71 was demonstrated in 29 patients. In 2007 EV71 was the second most common enterovirus type detected in Denmark. Twenty-one of the 29 patients were children aged ≤1 y, 24 were hospitalized, and meningitis was the most common diagnosis. Gastroenteritis and hand, foot and mouth disease were other common clinical manifestations, but no fatal cases or cases of pulmonary oedema were seen. A novel subgenotype in Europe, B5, dominated the 2007 outbreak, but co-circulated with subgenotypes C1 and C2. CONCLUSIONS: In conclusion EV71 was among the common enterovirus types in Denmark, and in 2007 a novel subgenotype, B5, was observed. EV71 was mainly diagnosed in infants, and the majority of patients were hospitalized with meningitis.


Assuntos
Enterovirus Humano A/isolamento & purificação , Infecções por Enterovirus/virologia , Adulto , Pré-Escolar , Dinamarca/epidemiologia , Enterovirus Humano A/genética , Infecções por Enterovirus/diagnóstico , Infecções por Enterovirus/epidemiologia , Feminino , Genótipo , Humanos , Lactente , Masculino , Meningite Viral/diagnóstico , Meningite Viral/epidemiologia , Meningite Viral/virologia , Filogenia , Estudos Retrospectivos
10.
BMC Res Notes ; 14(1): 440, 2021 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-34863304

RESUMO

OBJECTIVE: Convalescent plasma has been tried as therapy for various viral infections. Early observational studies of convalescent plasma treatment for hospitalized COVID-19 patients were promising, but randomized controlled studies were lacking at the time. The objective of this study was to investigate if convalescent plasma is beneficial to hospitalized patients with COVID-19. RESULTS: Hospitalized patients with confirmed COVID-19 and an oxygen saturation below 94% were randomized 1:1 to receive convalescent plasma in addition to standard of care or standard of care only. The primary outcome was number of days of oxygen treatment to keep saturation above 93% within 28 days from inclusion. The study was prematurely terminated when thirty-one of 100 intended patients had been included. The median time of oxygen treatment among survivors was 11 days (IQR 6-15) for the convalescent plasma group and 7 days (IQR 5-9) for the standard of care group (p = 0.4, median difference -4). Two patients in the convalescent plasma group and three patients in the standard of care group died (p = 0.64, OR 0.49, 95% CI 0.08-2.79). Thus no significant differences were observed between the groups. Trial registration ClinicalTrials NCT04600440, retrospectively registered Oct 23, 2020.


Assuntos
COVID-19 , COVID-19/terapia , Convalescença , Humanos , Imunização Passiva , Saturação de Oxigênio , SARS-CoV-2 , Suécia , Soroterapia para COVID-19
11.
J Clin Microbiol ; 48(2): 363-8, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19940055

RESUMO

Porcine sapovirus is an enteric calicivirus in domestic pigs that belongs to the family Caliciviridae. Some porcine sapoviruses are genetically related to human caliciviruses, which has raised public health concerns over animal reservoirs and the potential cross-species transmission of sapoviruses. We report on the incidence, genetic diversity, and molecular epidemiology of sapoviruses detected in domestic pigs in a comprehensive study conducted in six European countries (Denmark, Finland, Hungary, Italy, Slovenia, and Spain) between 2004 and 2007. A total of 1,050 swine fecal samples from 88 pig farms were collected and tested by reverse transcription-PCR for sapoviruses, and positive findings were confirmed by sequencing. Sapoviruses were detected in 80 (7.6%) samples collected on 39 (44.3%) farms and in every country. The highest prevalence was seen among piglets aged 2 to 8 weeks, and there was no significant difference in the proportion of sapovirus-positive findings for healthy animals and animals with diarrhea in Spain and Denmark (the only countries where both healthy animals and animals with diarrhea were tested). On the basis of the sequence of the RNA polymerase region, highly heterogeneous populations of viruses representing six different genogroups (genogroups III, VI, VII, and VIII, including potential new genogroups IX and X) were identified, with a predominance of genogroup GIII (50.6%). Genogroup VIII, found in five of the six countries, had the highest degree of homology (up to 66% at the amino acid level) to human sapovirus strains. Sapoviruses are commonly circulating and endemic agents in swine herds throughout Europe. Highly heterogeneous and potential new genogroups of sapoviruses were found in pigs; however, no "human-like" sapoviruses were detected.


Assuntos
Infecções por Caliciviridae/veterinária , Gastroenterite/veterinária , Variação Genética , Sapovirus/classificação , Sapovirus/genética , Doenças dos Suínos/epidemiologia , Animais , Infecções por Caliciviridae/epidemiologia , Infecções por Caliciviridae/virologia , Análise por Conglomerados , RNA Polimerases Dirigidas por DNA/genética , Europa (Continente)/epidemiologia , Fezes/virologia , Gastroenterite/epidemiologia , Gastroenterite/virologia , Genótipo , Incidência , Epidemiologia Molecular , Dados de Sequência Molecular , Filogenia , Prevalência , Sapovirus/isolamento & purificação , Análise de Sequência de DNA , Homologia de Sequência , Suínos , Doenças dos Suínos/virologia , Proteínas Virais/genética
12.
Infect Dis (Lond) ; 51(2): 122-130, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30676125

RESUMO

BACKGROUND: International migrants could be considered as a risk group for being susceptible to vaccine preventable diseases such as measles and rubella. However, data on immunity in different migrant groups are scarce. Apart from asylum seekers and refugees, other immigrant groups might also be at risk. We have examined measles and rubella specific IgG antibodies among newly arrived adult immigrants in Skåne region in southern Sweden. In contrast to children, adult immigrants are not offered catch-up vaccinations after arrival. METHODS: Stored serum samples from 989 asylum seekers and 984 pregnant women from the antenatal screening program, who had recently settled in Sweden, were analyzed for specific measles and rubella IgG-antibodies. Sex, age, reason for screening and geographic origin were variables entered into a multivariate regression model. RESULTS: There were considerable differences in seroimmunity to measles with regard to geographic origin (44-97%). Measles seroimmunity gaps were most prominent in immigrants from some European regions such as the Baltic countries, the former Yugoslavia and the Newly Independent States and Russia. Seroprotection for rubella varied less between geographic regions (90-99%). CONCLUSION: Susceptibility to measles among adult immigrants arriving in Sweden varies considerably depending on their geographic origin. Vaccinations against measles and rubella should be offered to groups of immigrants who might be incompletely immunized.


Assuntos
Anticorpos Antivirais/sangue , Emigrantes e Imigrantes , Sarampo/imunologia , Rubéola (Sarampo Alemão)/imunologia , Adulto , Idoso , Idoso de 80 Anos ou mais , Anticorpos Antivirais/imunologia , Feminino , Humanos , Imunoglobulina G/sangue , Imunoglobulina G/imunologia , Masculino , Pessoa de Meia-Idade , Estudos Soroepidemiológicos , Suécia , Adulto Jovem
13.
Infect Dis (Lond) ; 51(4): 241-248, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30760088

RESUMO

BACKGROUND: Along with the current development of molecular diagnostic methods of respiratory viruses, the bedside patient sampling techniques need to be evaluated. We here asked the question whether the addition of an oropharynx swab to the traditional nasopharynx swab might improve the diagnostic yield of multiplex PCR analysis. Ct values from the two sampling sites were compared as well as patient tolerability. METHODS: In an emergency department in Malmö, Sweden, 98 adult patients with respiratory disease were sampled both from the nasopharynx and oropharynx for virus diagnostics by PCR. RESULTS: Influenza (AH1, AH3, B), human metapneumovirus (hMPV) or respiratory syncytial virus (RSV) were detected by PCR in 58 subjects. The diagnostic yield was improved by combining nasopharyngeal and oropharyngeal sampling - a virus was detected in another 6 patients compared to traditional nasopharyngeal sampling (p = .031, McNemar's test). In 38/55 subjects viral load was higher in the nasopharynx than in the oropharynx. Self-reported discomfort was significantly lower from oropharyngeal sampling than from nasopharyngeal sampling. CONCLUSIONS: Adding an oropharynx sample to a nasopharynx sample increased the diagnostic yield of respiratory viruses. Oropharyngeal sampling was well tolerated.


Assuntos
Nasofaringe/virologia , Orofaringe/virologia , Infecções Respiratórias/diagnóstico , Infecções Respiratórias/virologia , Adulto , Idoso , Idoso de 80 Anos ou mais , Serviço Hospitalar de Emergência , Feminino , Humanos , Limite de Detecção , Masculino , Pessoa de Meia-Idade , Reação em Cadeia da Polimerase Multiplex , Manejo de Espécimes , Suécia , Carga Viral , Adulto Jovem
14.
Infect Control Hosp Epidemiol ; 38(1): 96-102, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27841102

RESUMO

OBJECTIVE To evaluate 2 different methods of surveillance and to estimate the incidence of norovirus (NoV) outbreaks in hospitals. DESIGN Prospective observational study. SETTING All 194 hospital wards in southern Sweden during 2 winter seasons (2010-2012). METHODS Clinical surveillance based on outbreak reports of 2 or more clinical cases, with symptom onset within 5 days, was compared with laboratory surveillance based on positive NoV results among inpatients. At least 2 NoV positive patients sampled within 5 days at a ward defined a cluster. Outbreak reports including at least 1 NoV positive case and clusters including at least 1 NoV positive patient with 5 or more days from ward admission to sampling were defined as NoV outbreaks. RESULTS During the study periods 135 NoV outbreaks were identified; 74 were identified by both clinical and laboratory surveillance, 18 were identified only by outbreak reports, and 43 were identified only by laboratory surveillance. The outbreak incidence was 1.0 (95% CI, 0.8-1.2) and 0.5 (95% CI, 0.3-0.6) per 1,000 admissions for the 2 different seasons, respectively. To correctly identify NoV outbreaks, the sensitivity and positive predictive value of the clinical surveillance were 68% and 88% and of the laboratory surveillance were 86% and 81%, respectively. CONCLUSION The addition of laboratory surveillance significantly improves outbreak surveillance and provides a more complete estimate of NoV outbreaks in hospitals. Laboratory surveillance can be recommended for evaluation of clinical surveillance. Infect Control Hosp Epidemiol 2016;1-7.


Assuntos
Infecções por Caliciviridae/epidemiologia , Surtos de Doenças , Monitoramento Epidemiológico , Gastroenterite/epidemiologia , Estações do Ano , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Criança , Pré-Escolar , Feminino , Humanos , Lactente , Recém-Nascido , Masculino , Pessoa de Meia-Idade , Norovirus/genética , Valor Preditivo dos Testes , Estudos Prospectivos , Sensibilidade e Especificidade , Suécia/epidemiologia , Adulto Jovem
15.
J Virol Methods ; 134(1-2): 92-8, 2006 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16417929

RESUMO

It is possible to visualize rapidly viral particles by electron microscopy (EM) in patient samples and in cell cultures, and characterize the particles on the basis of their size and morphology. In many instances, EM has contributed to the diagnosis of specific infectious agents. Four different types of viruses with different characteristics of particle size, capsid structure, the presence or absence of an envelope, genomic content and stability outside the host were screened and diagnosed by EM at the level of family/genus. The results were confirmed at the species level by elution of the sample material from the grids used for EM examination and nucleic acid amplification. This approach could be valuable in situations where the immediate diagnosis is unclear, or when new infectious agents appear.


Assuntos
Adenoviridae/isolamento & purificação , Citomegalovirus/isolamento & purificação , Vírus da Influenza A/isolamento & purificação , Microscopia Eletrônica de Transmissão , Norovirus/isolamento & purificação , Técnicas de Amplificação de Ácido Nucleico , Adenoviridae/genética , Adenoviridae/ultraestrutura , Infecções por Adenoviridae/diagnóstico , Infecções por Adenoviridae/virologia , Animais , Infecções por Caliciviridae/diagnóstico , Infecções por Caliciviridae/virologia , Citomegalovirus/genética , Citomegalovirus/ultraestrutura , Infecções por Citomegalovirus/diagnóstico , Infecções por Citomegalovirus/virologia , DNA Viral/genética , Olho/virologia , Fezes/virologia , Humanos , Vírus da Influenza A/genética , Vírus da Influenza A/ultraestrutura , Influenza Humana/diagnóstico , Influenza Humana/virologia , Norovirus/genética , Norovirus/ultraestrutura , RNA Viral/genética , Sensibilidade e Especificidade , Especificidade da Espécie , Inclusão do Tecido , Traqueia/virologia , Urina/virologia
16.
Lancet ; 363(9410): 682-8, 2004 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-15001325

RESUMO

BACKGROUND: Highly publicised outbreaks of norovirus gastroenteritis in hospitals in the UK and Ireland and cruise ships in the USA sparked speculation about whether this reported activity was unusual. METHODS: We analysed data collected through a collaborative research and surveillance network of viral gastroenteritis in ten European countries (England and Wales were analysed as one region). We compiled data on total number of outbreaks by month, and compared genetic sequences from the isolated viruses. Data were compared with historic data from a systematic retrospective review of surveillance systems and with a central database of viral sequences. FINDINGS: Three regions (England and Wales, Germany, and the Netherlands) had sustained epidemiological and viral characterisation data from 1995 to 2002. In all three, we noted a striking increase in norovirus outbreaks in 2002 that coincided with the detection and emergence of a new predominant norovirus variant of genogroup II4, which had a consistent mutation in the polymerase gene. Eight of nine regions had an annual peak in 2002 and the new genogroup II4 variant was detected in nine countries. Also, the detection of the new variant preceded an atypical spring and summer peak of outbreaks in three countries. INTERPRETATION: Our data from ten European countries show a striking increase and unusual seasonal pattern of norovirus gastroenteritis in 2002 that occurred concurrently with the emergence of a novel genetic variant. In addition to showing the added value of an international network for viral gastroenteritis outbreaks, these observations raise questions about the biological properties of the variant and the mechanisms for its rapid dissemination.


Assuntos
Infecções por Caliciviridae/epidemiologia , Surtos de Doenças/estatística & dados numéricos , Gastroenterite/epidemiologia , Norovirus/isolamento & purificação , Infecções por Caliciviridae/transmissão , Infecções por Caliciviridae/virologia , Europa (Continente)/epidemiologia , Microbiologia de Alimentos , Gastroenterite/virologia , Variação Genética , Humanos , Mutação/genética , Norovirus/genética , Vigilância da População , Estudos Retrospectivos , Estações do Ano
17.
Acta Vet Scand ; 57: 60, 2015 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-26410386

RESUMO

BACKGROUND: Porcine sapovirus, belonging to the family Caliciviridae, is an enteric virus that is widespread in the swine industry worldwide. A total of 14 sapovirus genogroups have been suggested and the most commonly found genogroup in swine is genogroup III (GIII). The goal of the present experiment was to examine the presence of sapovirus in 51 naturally infected pigs at two different time points. The pigs were kept under experimental conditions after weaning. Previous studies on sapovirus have primarily been of a cross sectional nature, typically prevalence studies performed on farms and abattoirs. In the present study, faecal samples, collected from each pig at 5½ weeks and 15-18 weeks of age, were analysed for sapovirus by reverse transciptase polymerase chain reaction and positive findings were genotyped by sequencing. RESULTS: At 5½ weeks of age, sapovirus was detected in the majority of the pigs. Sequencing revealed four different strains in the 5½ week olds-belonging to genogroups GIII and GVII. Ten to 13 weeks later, the virus was no longer detectable from stools of infected pigs. However, at this time point 13 pigs were infected with another GIII sapovirus strain not previously detected in the pigs studied. This GIII strain was only found in pigs that, in the initial samples, were virus-negative or positive for GVII. CONCLUSIONS: At 5 weeks of age 74 % of the pigs were infected with sapovirus. At 15-18 weeks of age all pigs had cleared their initial infection, but a new sapovirus GIII strain was detected in 25 % of the pigs. None of the pigs initially infected with the first GIII strain were reinfected with this new GIII strain, which may indicate the presence of a genogroup-specific immunity.


Assuntos
Infecções por Caliciviridae/veterinária , Sapovirus/genética , Doenças dos Suínos/virologia , Proteínas Virais/genética , Animais , Infecções por Caliciviridae/virologia , Fezes/virologia , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase Via Transcriptase Reversa/veterinária , Sapovirus/isolamento & purificação , Análise de Sequência de DNA/veterinária , Suínos , Desmame
18.
PLoS One ; 10(1): e0115331, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25590635

RESUMO

Norovirus (NoV) is a leading cause of gastroenteritis and genotype II.4 (GII.4) is responsible for the majority of nosocomial NoV infections. Our objective was to examine whether sequencing of the capsid gene might be a useful tool for the hospital outbreak investigation to define possible transmission routes. All NoV positive samples submitted from one university hospital during the 2007/8 season were selected. Genotyping of selected samples by partial polymerase gene sequencing had shown that the majority belonged to the GII.4 variant Den Haag 2006b and had identical polymerase sequences. Sequences of the capsid gene (1412 nucleotides) were obtained from the first available sample from 55 patients. From six immunocompromised patients with persistent infections a second sample was also included. As a control for a point-source outbreak, five samples from a foodborne outbreak caused by the same GII.4 variant were analyzed. Forty-seven of the inpatients (85%) were infected with the GII.4 variant Den Haag 2006b. Phylogenetic analysis of the Den Haag 2006b sequences identified four distinct outbreaks in different departments and a fifth outbreak with possible inter-department spread. In addition, a more heterogeneous cluster with evidence of repeated introductions from the community, but also possible inter-department spread was observed. In all six patients with paired sequences, evidence for in vivo evolution of the virus was found. Capsid gene sequencing showed substantial sequence variation among NoV GII.4 variant Den Haag 2006b strains from one single institution during a nine months' period. This method proved useful to understand the local epidemiology and, when used promptly, has the potential to make infection control measures more targeted.


Assuntos
Infecções por Caliciviridae/transmissão , Proteínas do Capsídeo/genética , Capsídeo/virologia , Gastroenterite/virologia , Genoma Viral , Norovirus/genética , Infecções por Caliciviridae/virologia , Fezes/virologia , Variação Genética , Hospitais Universitários , Humanos , Epidemiologia Molecular , Norovirus/isolamento & purificação , Filogenia , Análise de Sequência de DNA
19.
Ugeskr Laeger ; 164(20): 2617-23, 2002 May 13.
Artigo em Dinamarquês | MEDLINE | ID: mdl-12043405

RESUMO

INTRODUCTION: Our main aims were to establish criteria for early distinction between meningococcal disease and other conditions with similar clinical features, and to identify other causes of haemorrhagic rashes accompanied by fever. MATERIALS AND METHODS: This prospective study comprised 264 infants and children hospitalised with fever and skin haemorrhages. RESULTS: We identified an aetiological agent in 28%: 15% had meningococcal disease, 2% another invasive bacterial infection, 7% enterovirus infection, and 4% adenovirus infection. Five clinical variables discriminated meningococcal disease from other conditions on admission: skin haemorrhages of (1) characteristic appearance; (2) universal distribution and (3) a maximum diameter of > 2 mm; (4) poor general condition; and (5) nuchal rigidity. DISCUSSION: If any two or more of these clinical variables were present, the probability of identifying a patient with meningococcal disease was 97% and the false-positive rate was only 12%. This diagnostic algorithm did not identify children in whom septicaemia was caused by other bacterial species.


Assuntos
Febre/diagnóstico , Hemorragia/diagnóstico , Meningites Bacterianas/diagnóstico , Meningite Viral/diagnóstico , Infecções Meningocócicas/diagnóstico , Dermatopatias Bacterianas/diagnóstico , Dermatopatias Virais/diagnóstico , Pele/patologia , Criança , Pré-Escolar , Diagnóstico Diferencial , Febre/microbiologia , Febre/virologia , Hemorragia/microbiologia , Hemorragia/patologia , Humanos , Lactente , Meningites Bacterianas/microbiologia , Meningites Bacterianas/patologia , Meningite Viral/microbiologia , Meningite Viral/patologia , Infecções Meningocócicas/microbiologia , Infecções Meningocócicas/patologia , Técnicas Microbiológicas , Estudos Prospectivos , Dermatopatias Bacterianas/microbiologia , Dermatopatias Bacterianas/patologia , Dermatopatias Virais/microbiologia , Dermatopatias Virais/patologia
20.
Int J Epidemiol ; 42(4): 1070-6, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24062296

RESUMO

BACKGROUND: Because parvovirus B19 infection in pregnancy has been associated with infant morbidity and mortality in case reports and after intrauterine transfusion, we tested the population-based association using serum and hospital data of high quality. METHODS: We established a cohort of 113 228 children born to women tested for parvovirus B19 infection during pregnancy in a major diagnostic laboratory in Denmark, from 1994 to 2009. Information on 20 selected morbidity diagnoses and on mortality was obtained from the Danish National Patient Register, the Danish Cancer Register and the Danish Civil Registration System. Incidence rate ratios (IRR) were estimated by log-linear Poisson regression with adjustment for age and sex of the child, maternal age and year of maternal parvovirus B19 test. RESULTS: A total of 1095 (1.0%) children were born to mothers who were infected with parvovirus B19 during pregnancy. During 1 million person-years of follow-up, 10 856 children experienced morbidity and 590 children died. Overall, maternal infection status was neither associated with morbidity during infancy (IRR 0.64; 95% CI: 0.40 to 1.02) or childhood (IRR 0.93; 95% CI: 0.77 to 1.14), nor with infant mortality (IRR 0.98; 95% CI: 0.44 to 2.20). Specifically, there was no association with 19 of 20 morbidities. An excess risk of cancer in the central nervous system was observed (IRR 5.88; 95% CI: 1.41 to 24.6); however, the number of exposed cases was very small (n = 2). CONCLUSIONS: Parvovirus B19 infection during pregnancy was not associated with overall morbidity or mortality in infancy and childhood.


Assuntos
Infecções por Parvoviridae/mortalidade , Parvovirus B19 Humano , Complicações Infecciosas na Gravidez/mortalidade , Efeitos Tardios da Exposição Pré-Natal/mortalidade , Adolescente , Adulto , Criança , Pré-Escolar , Dinamarca/epidemiologia , Métodos Epidemiológicos , Feminino , Humanos , Lactente , Recém-Nascido , Idade Materna , Pessoa de Meia-Idade , Gravidez , Adulto Jovem
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