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1.
Nat Methods ; 16(2): 151-162, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30664776

RESUMO

G-protein-coupled receptors (GPCRs) transduce physiological and sensory stimuli into appropriate cellular responses and mediate the actions of one-third of drugs. GPCR structural studies have revealed the general bases of receptor activation, signaling, drug action and allosteric modulation, but so far cover only 13% of nonolfactory receptors. We broadly surveyed the receptor modifications/engineering and methods used to produce all available GPCR crystal and cryo-electron microscopy (cryo-EM) structures, and present an interactive resource integrated in GPCRdb ( http://www.gpcrdb.org ) to assist users in designing constructs and browsing appropriate experimental conditions for structure studies.


Assuntos
Biologia Computacional/métodos , Internet , Receptores Acoplados a Proteínas G/genética , Sítio Alostérico , Animais , Bovinos , Microscopia Crioeletrônica , Cristalografia por Raios X , Bases de Dados de Proteínas , Desenho de Fármacos , Glicosilação , Células HEK293 , Humanos , Mutação , Fosforilação , Domínios Proteicos , Engenharia de Proteínas , Rodopsina/química , Transdução de Sinais , Software
2.
Proteins ; 89(11): 1577-1586, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34272892

RESUMO

G protein-coupled receptors (GPCRs) participate in most physiological processes and are important drug targets in many therapeutic areas. Recently, many GPCR X-ray structures became available, facilitating detailed studies of their sequence-structure-mobility-function relations. We show that the functional role of many conserved GPCR sequence motifs is to create weak spots in the transmembrane helices that provide the structural plasticity necessary for ligand binding and signaling. Different receptor families use different conserved sequence motifs to obtain similar helix irregularities that allow for the same motions upon GPCR activation. These conserved motions come together to facilitate the timely release of the conserved sodium ion to the cytosol. Most GPCR crystal structures could be determined only after stabilization of the transmembrane helices by mutations that remove weak spots. These mutations often lead to diminished binding of agonists, but not antagonists, which logically agrees with the fact that large helix rearrangements occur only upon agonist binding. Upon activation, six of the seven TM helices in GPCRs undergo helix motions and/or deformations facilitated by weak spots in these helices. The location of these weak spots is much more conserved than the sequence motifs that cause them. Knowledge about these weak spots helps understand the activation process of GPCRs and thus helps design medicines.


Assuntos
Domínios e Motivos de Interação entre Proteínas , Receptores Acoplados a Proteínas G/química , Transdução de Sinais , Software , Sequência de Aminoácidos , Sítios de Ligação , Membrana Celular/metabolismo , Sequência Conservada , Bases de Dados de Proteínas , Células Eucarióticas/metabolismo , Expressão Gênica , Humanos , Mutação , Ligação Proteica , Conformação Proteica em alfa-Hélice , Dobramento de Proteína , Receptores Acoplados a Proteínas G/classificação , Receptores Acoplados a Proteínas G/genética , Receptores Acoplados a Proteínas G/metabolismo , Sódio/metabolismo , Termodinâmica
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