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1.
Public Health ; 234: 58-63, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-38954883

RESUMO

OBJECTIVES: In the American regions, Brazil accounts for 97% of visceral leishmaniasis (VL) cases, with a case fatality rate of approximately 10%. This study aimed to investigate the VL mortality distribution in Brazil and identify high-priority and high-risk areas for intervention strategies. STUDY DESIGN: This was an ecological study that analysed the spatial-temporal patterns of VL mortality in Brazilian municipalities. METHODS: Age-standardised VL mortality rates from the Global Burden of Disease study from 2001 to 2018 were used. The distribution of mortality in the municipalities was assessed, and subsequently the Local Index of Spatial Autocorrelation (LISA) analysis was conducted to identify contiguous areas with high mortality rates. Scan analysis identified clusters of high spatial-temporal risks. RESULTS: The highest mortality rates and clusters were in municipalities located in the Northeast region and in the states of Tocantins and Roraima (North region), Mato Grosso do Sul (Central-West region), and Minas Gerais (Southeast region). According to LISA, there was an increase in the number of municipalities classified as high priority from the first 3-year period (n = 434) to the last 3-year period (n = 644). The spatio-temporal analysis identified 21 high-risk clusters for VL mortality. CONCLUSION: Areas with a high risk of VL mortality should prioritise preventing transmission, invest in early diagnosis and treatment, and promote the training of healthcare professionals.


Assuntos
Cidades , Carga Global da Doença , Leishmaniose Visceral , Análise Espaço-Temporal , Leishmaniose Visceral/mortalidade , Leishmaniose Visceral/epidemiologia , Humanos , Brasil/epidemiologia , Cidades/epidemiologia , Masculino , Adulto , Feminino
2.
Anim Genet ; 52(4): 505-508, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34106478

RESUMO

The objectives of this study were to provide the buffalo research community with an updated SNP map for the Axiom Buffalo Genotyping (ABG) array with genomic positions for SNP currently unmapped and to map all cattle QTL from the CattleQTLdb onto the buffalo reference assembly. To update the ABG array map, all SNP probe sequences from the ABG array were re-aligned against the UOA_WB_1 assembly. With the new map, the number of mapped markers increased by approximately 10% and went from 106 778 to 116 708, which reduced the average marker spacing by approximately 2 kb. A comparison of results between signatures of autozygosity study using the ABG and the new map showed that, when the additional markers were used there was an increase in the autozygosity peaks and additional peaks in BBU5 and BBU11 could be identified. After sequence alignment and quality control, 64 650 (UMD3.1) and 76 530 (ARS_UCD1.2) cattle QTL were mapped onto the buffalo genome. The mapping of the bovine QTL database onto the buffalo genome should be useful for genome-wide association studies in buffalo and, given the high homology between the two species, the positions of cattle QTL on the buffalo genome can serve as a stepping stone towards a water buffalo QTL database.


Assuntos
Búfalos/genética , Estudo de Associação Genômica Ampla/veterinária , Genótipo , Locos de Características Quantitativas , Animais , Bovinos/genética
3.
J Dairy Sci ; 104(2): 1917-1927, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33272579

RESUMO

Characterization of autozygosity is relevant to monitor genetic diversity and manage inbreeding levels in breeding programs. Identification of autozygosity hotspots can unravel genomic regions targeted by selection for economically important traits and can help identify candidate genes for selection. In this study, we estimated the inbreeding levels of a Brazilian population of Murrah buffalo undergoing selection for milk production traits, particularly milk yield. We also studied the distribution of runs of homozygosity (ROH) islands and identified putative genes and quantitative trait loci (QTL) under selection. We genotyped 422 Murrah buffalo for 51,611 SNP; 350 of these had ROH longer than 10 Mb, indicating the occurrence of inbreeding in the last 5 generations. The mean length of the ROH per animal was 4.28 ± 1.85 Mb. Inbreeding coefficients were calculated from the genomic relationship matrix, the pedigree, and the ROH, with estimates varying between 0.242 and 0.035. Inbreeding estimates from the pedigree had a low correlation with the genomic estimates, and estimates from the genomic relationship matrix were much higher than those from the pedigree or the ROH. Signatures of selection were identified in 6 genomic regions, located on chromosomes 1, 2, 3, 5, 16, and 18, encompassing a total of 190 genes and 174 QTL. Many of the genes (e.g., APRT and ACSF3) and QTL identified are related to milk production traits, such as milk yield, milk fat yield and percentage, and milk protein yield and percentage. Other genes are associated with reproduction and immune response traits as well as morphological aspects of the buffalo species. Inbreeding levels in this population are still low but are increasing due to selection and should be managed to avoid future losses due to inbreeding depression. The proximity of genes linked to milk production traits with genes associated with reproduction and immune system traits suggests the need to include these latter genes in the breeding program to avoid negatively affecting them due to selection for production traits.


Assuntos
Búfalos/genética , Genômica , Leite/metabolismo , Reprodução , Animais , Brasil , Búfalos/fisiologia , Feminino , Genótipo , Homozigoto , Endogamia , Masculino , Linhagem , Fenótipo , Locos de Características Quantitativas/genética
4.
Br Poult Sci ; 62(6): 846-851, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34114920

RESUMO

1. The bioavailability of a trace mineral source is related to its intestinal solubility (bioaccessibility), which in turn is determined by its physicochemical properties. It is still not clear which characteristics are more relevant in affecting solubility and bioavailability of mineral sources. Zinc oxide (ZnO) is a common feed additive used to supplement zinc in the diet of monogastric animals. However, different sources have shown variable responses on animal bioavailability.2. This study hypothesised that different sources of feed grade ZnO have various physicochemical features that lead to distinct bioavailability values. Feed grade ZnO samples collected from the feed industry worldwide were characterised for their physicochemical features and tested in broilers to allow bioavailability determined.3. A total of 135 male Cobb broiler chickens were fed a standard starter diet from day 1 after hatching up to d 7. At d 8, animals were allocated in individual cages and fed one of the following dietary treatments during 15 days: a basal diet with 23.5 ppm of zinc and seven test diets with supplemented ZnO or zinc sulphate (ZnSO4) at 6 or 12 ppm.4. Different sources of ZnO showed an effect of solubility in the stomach and supplementation influenced total Zn levels in the ileum. The bioavailability of the different sources varied from 49% to 160% in relation to ZnSO4. Aggregate size of particles seems to explain most of the variability in the bioavailability of the different sources tested in broilers. In conclusion, physicochemical properties of ZnO can partly explain the variability observed in terms of biological value.


Assuntos
Óxido de Zinco , Ração Animal/análise , Animais , Disponibilidade Biológica , Galinhas , Dieta/veterinária , Suplementos Nutricionais , Masculino , Sulfato de Zinco
5.
Epidemiol Infect ; 146(5): 565-570, 2018 04.
Artigo em Inglês | MEDLINE | ID: mdl-29463341

RESUMO

The aim of this study was to evaluate the distribution of cases and the social determinants associated with death from human visceral leishmaniasis (HVL) and VL-HIV co-infection in Belo Horizonte, Minas Gerais state, Brazil, between 2006 and 2013. Descriptive statistics and analysis of associations were performed using chi-square of the raised variables, such as sex, age, skin colour and schooling of cases of HVL. During the study period, there were 866 cases of HVL with 111 deaths in Belo Horizonte. Morbidity and lethality rates (LR) of HVL in Belo Horizonte remained high over almost all the years evaluated, with an average incidence rate of 4.18 cases/100 000 inhabitants and a LR of 11.16%. With respect to skin colour, it was found that people characterised as black or mulatto had higher morbidity, followed by white. Regarding schooling, LR was more prevalent among individuals with lower education. One of the social risk factors was co-infection with HIV, which was present in many cases of HVL. Furthermore, it was found that older age and the male sex were also risk factors for death from HVL in Belo Horizonte.


Assuntos
Coinfecção/epidemiologia , Infecções por HIV/epidemiologia , Leishmaniose Visceral/epidemiologia , Adolescente , Adulto , Fatores Etários , Idoso , Idoso de 80 Anos ou mais , Brasil/epidemiologia , Criança , Pré-Escolar , Coinfecção/parasitologia , Coinfecção/virologia , Feminino , Infecções por HIV/virologia , Humanos , Incidência , Lactente , Recém-Nascido , Leishmaniose Visceral/mortalidade , Leishmaniose Visceral/parasitologia , Masculino , Pessoa de Meia-Idade , Morbidade , Prevalência , Fatores de Risco , Fatores Sexuais , Fatores Socioeconômicos , Adulto Jovem
6.
Phys Chem Chem Phys ; 20(28): 19045-19056, 2018 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-29972185

RESUMO

Typical direct liquid fuel cells (DLFCs) use a liquid fuel and O2 as the oxidant. However, for applications where O2 is not available (e.g., space and underwater), the gas has been replaced by H2O2 as a liquid oxidant. This work presents a study of various ceramic disc electrodes with K2NiO4 structure and nominal compositions La2NiO4, La2CuO4, La1.9Pr0.1CuO4, La1.9Sr0.1CuO4, La1.8Ce0.2NiO4, La1.9Pr0.1NiO4, La1.8Pr0.2NiO4 and La1.9Sr0.1NiO4 to assess their stability and activity for the hydrogen peroxide reduction reaction (HPRR) in alkaline media. Stability tests conducted in 2 M NaOH show that Ni and Cu are readily dissolved, as occurs for substituting elements such as Sr, in agreement with calculated Pourbaix diagrams. Such degradation affects the surface of the materials, which is depleted of transition metals. This has consequences for the ORR and HPRR activity due to formation of a La-rich passivation layer on the surface. Only La2CuO4 and La1.8Ce0.2NiO4 display HPRR activity at around -0.25 V vs. RHE. An attempt is made to correlate the composition, chemical stability and electrochemical behaviour of these materials based on known molecular-orbital models proposed for the oxygen reduction reaction.

7.
Genet Mol Res ; 16(2)2017 May 31.
Artigo em Inglês | MEDLINE | ID: mdl-28613377

RESUMO

The genetic diversity study has paramount importance in breeding programs; hence, it allows selection and choice of the parental genetic divergence, which have the agronomic traits desired by the breeder. This study aimed to characterize the genetic divergence between 24 soybean genotypes through their agronomic traits, using multivariate clustering methods to select the potential genitors for the promising hybrid combinations. Six agronomic traits evaluated were number of days to flowering and maturity, plant height at flowering and maturity, insertion height of the first pod, and yield. The genetic divergence evaluated by multivariate analysis that esteemed first the Mahalanobis' generalized distance (D2), then the clustering using Tocher's optimization methods, and then the unweighted pair group method with arithmetic average (UPGMA). Tocher's optimization method and the UPGMA agreed with the groups' constitution between each other, the formation of eight distinct groups according Tocher's method and seven distinct groups using UPGMA. The trait number of days for flowering (45.66%) was the most efficient to explain dissimilarity between genotypes, and must be one of the main traits considered by the breeder in the moment of genitors choice in soybean-breeding programs. The genetic variability allowed the identification of dissimilar genotypes and with superior performances. The hybridizations UFU 18 x UFUS CARAJÁS, UFU 15 x UFU 13, and UFU 13 x UFUS CARAJÁS are promising to obtain superior segregating populations, which enable the development of more productive genotypes.


Assuntos
Variação Genética , Genótipo , Glycine max/genética , Modelos Genéticos , Melhoramento Vegetal/métodos , Característica Quantitativa Herdável , Glycine max/crescimento & desenvolvimento
8.
Reprod Domest Anim ; 52(5): 911-913, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28580618

RESUMO

Puberty is a stage of sexual development determined by the interaction of environmental factors and genetic mechanisms. Among them, thyroid function plays a key role in sexual development and spermatogenic function and is under the control of several genes, including the well-described thyroglobulin gene (TG). Previous reports have shown genetic association between thyroid function and selected single nucleotide polymorphisms (SNPs) in taurine cattle. Therefore, the identification of genetic mechanisms involved in the regulation of this trait can assist with the selection for early pubertal bulls, thus improving genetic progress in livestock breeding. The aim of this study was to validate the association between TG SNPs and age at puberty in zebuine bulls. Three SNPs (rs110406764, rs109662686, rs109057985) were genotyped in 159 Guzerat animals using SEQUENOM technology. Results showed a significant association (p < .05) between the studied SNPs and puberty age, in agreement with our previous reports in a taurine breed. Interestingly, allele frequencies were different from those already reported, being GAT the most favourable allele for age at puberty in Guzerat (94.4 days lower). Overall, our findings corroborate previous reports and reinforce the importance of genetic influence in the regulation of sexual development and puberty through a thyroid pathway in zebuine cattle.


Assuntos
Bovinos/genética , Maturidade Sexual/genética , Tireoglobulina/genética , Animais , Cruzamento , Masculino , Polimorfismo de Nucleotídeo Único , Escroto/anatomia & histologia , Espermatogênese
9.
Genet Mol Res ; 16(3)2017 Sep 27.
Artigo em Inglês | MEDLINE | ID: mdl-28973775

RESUMO

Breeding programs currently use statistical analysis to assist in the identification of superior genotypes at various stages of a cultivar's development. Differently from these analyses, the computational intelligence approach has been little explored in genetic improvement of cotton. Thus, this study was carried out with the objective of presenting the use of artificial neural networks as auxiliary tools in the improvement of the cotton to improve fiber quality. To demonstrate the applicability of this approach, this research was carried out using the evaluation data of 40 genotypes. In order to classify the genotypes for fiber quality, the artificial neural networks were trained with replicate data of 20 genotypes of cotton evaluated in the harvests of 2013/14 and 2014/15, regarding fiber length, uniformity of length, fiber strength, micronaire index, elongation, short fiber index, maturity index, reflectance degree, and fiber quality index. This quality index was estimated by means of a weighted average on the determined score (1 to 5) of each characteristic of the HVI evaluated, according to its industry standards. The artificial neural networks presented a high capacity of correct classification of the 20 selected genotypes based on the fiber quality index, so that when using fiber length associated with the short fiber index, fiber maturation, and micronaire index, the artificial neural networks presented better results than using only fiber length and previous associations. It was also observed that to submit data of means of new genotypes to the neural networks trained with data of repetition, provides better results of classification of the genotypes. When observing the results obtained in the present study, it was verified that the artificial neural networks present great potential to be used in the different stages of a genetic improvement program of the cotton, aiming at the improvement of the fiber quality of the future cultivars.


Assuntos
Genótipo , Gossypium/genética , Modelos Genéticos , Redes Neurais de Computação , Seleção Artificial , Fibra de Algodão/normas , Gossypium/crescimento & desenvolvimento , Melhoramento Vegetal/métodos , Característica Quantitativa Herdável , Seleção Genética
10.
BMC Genomics ; 16: 872, 2015 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-26510479

RESUMO

BACKGROUND: Asian buffaloes (Bubalus bubalis) have an important socio-economic role. The majority of the population is situated in developing countries. Due to the scarce resources in these countries, very few species-specific biotechnology tools exist and a lot of cattle-derived technologies are applied to buffaloes. However, the application of cattle genomic tools to buffaloes is not straightforward and, as results suggested, despite genome sequences similarity the genetic polymorphisms are different. RESULTS: The first SNP chip genotyping platform designed specifically for buffaloes has recently become available. Herein, a genome-wide association study (GWAS) and gene network analysis carried out in buffaloes is presented. Target phenotypes were six milk production and four reproductive traits. GWAS identified SNP with significant associations and suggested candidate genes that were specific to each trait and also genes with pleiotropic effect, associated to multiple traits. CONCLUSIONS: Network predictions of interactions between these candidate genes may guide further molecular analyses in search of disruptive mutations, help select genes for functional experiments and evidence metabolism differences in comparison to cattle. The cattle SNP chip does not offer an optimal coverage of buffalo genome, thereafter the development of new buffalo-specific genetic technologies is warranted. An annotated reference genome would greatly facilitate genetic research, with potential impact to buffalo-based dairy production.


Assuntos
Búfalos/genética , Animais , Indústria de Laticínios , Estudo de Associação Genômica Ampla , Genótipo , Polimorfismo de Nucleotídeo Único/genética
11.
Analyst ; 140(3): 854-9, 2015 Feb 07.
Artigo em Inglês | MEDLINE | ID: mdl-25460364

RESUMO

LTA zeolite is used both in industry as well as in laboratories, because of its spatial-specific structure which is useful in gas adsorption and in ion exchange separation. At-line reaction monitoring and multivariate analysis of data, such as Principal Component Analysis (PCA), are fundamentals of the Process Analytical Technology (PAT), which consists of the use of analyzers with rapid detection and low sample preparation for analysis during the process stream. In this work, an optimization of zeolite LTA synthesis was performed aiming to obtain nanocrystals and the synthesis was monitored using Raman spectroscopy and PCA. A reaction mixture of 6.2Na2O : Al2O3 : 2SiO2 : 128H2O was used and it was possible to obtain a small particle size and high crystallinity after 72 h of synthesis at 25 °C. The synthesis was monitored at-line, using Raman spectroscopy in both liquid and solid phases. The extension of the reaction could be clearly observed by the PCA scores. As expected, the liquid phase presented changes over time, but the solid phase presented three specific stationary conditions at 0-24 h, 32-56 h and 72-80, related to the beginning of the reaction, the nucleation process, and the crystal formation, respectively. In addition, it was possible to identify the intermediates of the reaction and with the aid of PCA to monitor the reaction close to the real time.

12.
J Dairy Sci ; 98(5): 3492-5, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25726116

RESUMO

The diacylglycerol-O-transferase 1 gene is a positional and functional candidate for milk composition traits. The objective of this study was to evaluate the segregation of the variable number of tandem repeat polymorphisms in the regulatory region of diacylglycerol-O-transferase 1 gene in a water buffalo herd, and to assess the association of this mutation with milk production traits. For this purpose, 196 Murrah buffalo cows were genotyped by PCR. The association of the marker with total milk, fat, and protein yields at 305 d of lactation, milk fat and protein percentage, and somatic cell scores were evaluated by single-trait analyses using a generalized mixed model. Two segregating alleles were identified in the population. The allele with 2 repeats affected fat percentage favorably. The present results suggest that this polymorphism is an interesting marker to include in the genetic evaluation of buffaloes.


Assuntos
Leite/química , Repetições Minissatélites , Polimorfismo Genético , Alelos , Animais , Búfalos/genética , Diacilglicerol O-Aciltransferase/genética , Diacilglicerol O-Aciltransferase/metabolismo , Gorduras na Dieta/análise , Feminino , Genótipo , Lactação , Proteínas do Leite/análise , Mutação , Fenótipo , Regiões Promotoras Genéticas
13.
Genet Mol Res ; 14(4): 18188-97, 2015 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-26782466

RESUMO

The hormone ghrelin is produced in the stomach wall, has an orexigenic function, stimulates growth hormone secretion, and affects the energy balance of the animal. Therefore, the ghrelin gene (GHRL) is considered to be a good candidate marker for the identification of traits of great economic importance in cattle, such as those associated with feed intake, growth, and carcass quality. The use of molecular genetic markers associated with such traits permits the earlier and more accurate identification of superior animals, thus reducing the interval between generations, and increasing the genetic gain. Six SNPs were found in the GHRL gene, located in intron 3, intron 4, and exon 5. The positions of the SNPs on the gene and the substitutions were: g.2184A>G, g.2347T>C, g.4469T>C, g.4548A>G, g.4663T>C, and g.4729T>C (GenBank accession No. JX565585). After analysis of linkage disequilibrium, association tests were performed between four SNPs with the traits year weight for males, yearling weight for females, dry matter intake, loin eye area, and rump fat thickness (P ≤ 0.05). Therefore, GHRL is an important candidate gene that may be used to identify genetic variations that influence traits of economic importance in beef cattle.


Assuntos
Estudos de Associação Genética , Grelina/genética , Carne , Carne Vermelha , Animais , Peso Corporal/genética , Bovinos , Feminino , Genótipo , Haplótipos , Desequilíbrio de Ligação , Masculino , Fenótipo , Polimorfismo de Nucleotídeo Único
14.
Genet Mol Res ; 14(1): 234-43, 2015 Jan 16.
Artigo em Inglês | MEDLINE | ID: mdl-25729955

RESUMO

The objective of this study was to identify associations between known polymorphisms in genes related to adipose tissue and sexual precocity in Nellore cattle. A total of 1689 precocious and non-precocious heifers belonging to farms participating in Conexão Delta G breeding program were studied. SNPs from the Illumina High-Density Bovine SNP BeadChip were used. This chip contains 777,000 SNPs located within the region of the candidate genes at a distance of up to 5 kb, considering that linkage disequilibrium (LD) exists at this distance. Linear models were used for statistical analysis. The fastPHASE and GenomeStudio programs were used for haplotype reconstruction and LD analysis based on r2 statistics. Fifty-seven candidate genes and 443 SNPs were analyzed: among the latter, 370 SNPs formed 83 haplotypes, while the remaining SNPs were studied separately. Statistical analysis showed that only three haplotypes, one haplotype consisting of two SNPs located in the FABP4 gene and two haplotypes consisting of four and two SNPs located in the PPP3CA gene, had a significant effect on sexual precocity at P < 0.05. It can be concluded that the FABP4 and PPP3CA genes influence sexual precocity and may therefore be used in selection programs designed to improve sexual precocity in Nellore cattle.


Assuntos
Bovinos/genética , Estudos de Associação Genética , Metabolismo dos Lipídeos/genética , Puberdade Precoce/genética , Animais , Cromossomos de Mamíferos/genética , DNA/isolamento & purificação , Feminino , Frequência do Gene , Técnicas de Genotipagem , Haplótipos , Masculino , Polimorfismo de Nucleotídeo Único
15.
Poult Sci ; 94(12): 2863-9, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26476088

RESUMO

This study investigates the genetic association of the SNP present in the ACTA1 gene with performance traits, organs and carcass of broilers to help marker-assisted selection of a paternal broiler line (TT) from EMBRAPA Swine and Poultry, Brazil. Genetic and phenotypic data of 1,400 broilers for 68 traits related to body performance, organ weights, weight of carcass parts, and yields as a percentage of organs and carcass parts were used. The maximum likelihood method, considering 4 analytical models, was used to analyze the genetic association between the SNP and these important economic traits. The association analysis was performed using a mixed animal model including the random effect of the animal (polygenic), and the fixed effects of sex (2 levels), hatch (5 levels) and SNP (3 levels), besides the random error. The traits significantly associated (P<0.05) with the SNP were analyzed, along with body weight at 42 days of age (BW42), by the restricted maximum likelihood method using the multi-trait animal model to estimate genetic parameters. The analysis included the residual and additive genetic random effects and the sex-hatch fixed effect. The additive effects of the SNP were associated with breast meat (BMY), liver yield (LIVY), body weight at 35 days of age (BW35); drumstick skin (DSW), drumstick (DW) and breast (BW) weights. The heritability estimates for these traits, in addition to BW42, ranged from 0.24±0.06 to 0.45±0.08 for LIVY and BW35, respectively. The genetic correlation ranged from 0.02±0.18 for LIVY and BMY to 0.97±0.01 for BW35 and BW42. Based on the results of this study, it can be concluded that ACTA1 gene is associated with performance traits BW35, LIV and BMY, DW, BW and DW adjusted for body weight at 42 days of age. Therefore, the ACTA1 gene is an important molecular marker that could be used together with others already described to increase the economically important traits in broilers.


Assuntos
Actinas/genética , Proteínas Aviárias/genética , Galinhas/fisiologia , Polimorfismo de Nucleotídeo Único , Actinas/metabolismo , Animais , Proteínas Aviárias/metabolismo , Peso Corporal , Brasil , Galinhas/genética , Galinhas/crescimento & desenvolvimento , Feminino , Marcadores Genéticos , Funções Verossimilhança , Masculino , Carne/análise , Tamanho do Órgão
16.
Genet Mol Res ; 13(3): 4797-804, 2014 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-25062415

RESUMO

Diallel crossing methods provide information regarding the performance of genitors between themselves and their hybrid combinations. However, with a large number of parents, the number of hybrid combinations that can be obtained and evaluated become limited. One option regarding the number of parents involved is the adoption of circulant diallels. However, information is lacking regarding diallel analysis using mixed models. This study aimed to evaluate the efficacy of the method of linear mixed models to estimate, for variable resistance to foliar fungal diseases, components of general and specific combining ability in a circulant table with different s values. Subsequently, 50 diallels were simulated for each s value, and the correlations and estimates of the combining abilities of the different diallel combinations were analyzed. The circulant diallel method using mixed modeling was effective in the classification of genitors regarding their combining abilities relative to the complete diallels. The numbers of crosses in which each genitor(s) will compose the circulant diallel and the estimated heritability affect the combining ability estimates. With three crosses per parent, it is possible to obtain good concordance (correlation above 0.8) between the combining ability estimates.


Assuntos
Alelos , Carica/genética , Modelos Genéticos , Doenças das Plantas/genética , Folhas de Planta/genética , Seleção Genética , Cruzamento , Carica/imunologia , Carica/microbiologia , Cruzamentos Genéticos , Fungos/imunologia , Genótipo , Doenças das Plantas/imunologia , Doenças das Plantas/microbiologia , Imunidade Vegetal/genética , Folhas de Planta/imunologia , Folhas de Planta/microbiologia
17.
Genet Mol Res ; 13(2): 4202-15, 2014 Jun 09.
Artigo em Inglês | MEDLINE | ID: mdl-25036164

RESUMO

To define the best strategies for genomic association studies and genomic selection, it is necessary to determine the extent of linkage disequilibrium (LD) and the genetic structure of the study population. The current study evaluated the transference of genomic information contained in the Illumina BovineHD BeadChip from cattle to buffaloes, and assessed the extent of the LD in buffaloes. Of the 688,593 bovine single nucleotide polymorphism (SNP) that were successfully genotyped from the 384 buffalo samples, only 16,580 markers were polymorphic, and had minor allele frequencies greater than 0.05. A total of 16,580 polymorphic SNPs were identified, which were uniformly distributed throughout the autosomes, because the density and mean distance between markers were similar for all autosomes. The average minor allele frequency for the 16,580 SNPs was 0.23. The overall mean LD for pairs of adjacent markers was 0.29 and 0.71, when measured as for r2 and |D'|, respectively. The 16,580 polymorphic SNPs were matched to Bos taurus chromosome in the current bovine genome assembly (Btau 4.2), and could be utilized in association studies. In conclusion, the Illumina BovineHD BeadChip contains approximately 16,580 polymorphic markers for the water buffalo, which are broadly distributed across the genome. These data could be used in genomic association and genomic selection studies; however, it might be necessary to develop a panel with specific SNP markers for water buffaloes.


Assuntos
Búfalos/genética , Frequência do Gene , Genoma , Genômica/métodos , Polimorfismo de Nucleotídeo Único , Animais , Bovinos , Cromossomos de Mamíferos , Estudos de Associação Genética , Desequilíbrio de Ligação
18.
Reprod Domest Anim ; 49(4): e35-e39, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24925165

RESUMO

This short communication reports the impact of endometrial biopsies, uterine flushings and follicular fluid aspiration procedures at day 6 post artificial insemination (AI) on pregnancy rates. In Experiment 1, cows were timed AI (TAI) and assigned to the following treatment groups: control (n = 37), uterine flushing (n = 35) and endometrial biopsy (n = 38). On day 30 post AI, pregnancy rates were 40.5%, 33% and 28.5%, respectively (p > 0.1). Pregnancy rate on day 60 was lower (p < 0.004) in flushed cows than in the controls. In Experiment 2, oestrus was detected and cows were assigned to flushing (n = 32) or biopsy (n = 33) treatments 6 days after AI, which resulted in pregnancy rates of 31% and 36%, respectively (p > 0.1). In Experiment 3, cows were, 6 days after TAI, randomly assigned to the following treatments: control (n = 84) or aspiration of the largest follicle (n = 73). Pregnancy rates on day 30 post AI were 63.5% for the control group and 53% for the aspirated group (p > 0.1). In conclusion, uterine flushing and endometrial biopsy negatively affect pregnancy rates, but neither procedure can be considered to be incompatible with pregnancy maintenance. Follicular aspiration during pregnancy does not interact with pregnancy success. The amount and quality of samples obtained are compatible with the use of cellular and molecular analysis of uterine variables from cows that failed or succeeded on maintaining pregnancy.


Assuntos
Biópsia/efeitos adversos , Fertilidade , Irrigação Terapêutica/efeitos adversos , Útero/fisiologia , Animais , Bovinos , Desenvolvimento Embrionário , Endométrio/irrigação sanguínea , Endométrio/patologia , Feminino , Líquido Folicular , Inseminação Artificial/veterinária , Folículo Ovariano , Gravidez , Taxa de Gravidez , Sucção , Fatores de Tempo , Ultrassonografia Pré-Natal/veterinária
19.
Genet Mol Res ; 13(4): 10256-68, 2014 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-25501237

RESUMO

The aim of this study was to identify single-nucleotide polymorphisms (SNPs) in buffaloes associated with milk yield and content, in addition to somatic cell scores based on the cross-species transferability of SNPs from cattle to buffalo. A total of 15,745 SNPs were analyzed, of which 1562 showed 1% significance and 4742 with 5% significance, which were associated for all traits studied. After application of Bonferroni's correction for multiple tests of the traits analyzed, we found 2 significant SNPs placed on cattle chromosomes BTA15 and BTA20, which are homologous to buffalo chromosomes BBU16 and BBU19, respectively. In this genome association study, we found several significant SNPs affecting buffalo milk production and quality. Furthermore, the use of the high-density bovine BeadChip was suitable for genomic analysis in buffaloes. Although extensive chromosome arm homology was described between cattle and buffalo, the exact chromosomal position of SNP markers associated with these economically important traits in buffalo can be determined only through buffalo genome sequencing.


Assuntos
Búfalos/genética , Estudo de Associação Genômica Ampla/veterinária , Lactação , Polimorfismo de Nucleotídeo Único , Animais , Bovinos , Cromossomos de Mamíferos , Feminino , Marcadores Genéticos , Genótipo , Locos de Características Quantitativas
20.
Environ Pollut ; 350: 123989, 2024 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-38642791

RESUMO

The increasing global food demand is threatening the sustainability of agrifood production systems. The intensification of agricultural practices, with inadequate use of pesticides and fertilizers, poses major challenges to the good functioning of agroecosystems and drastically degrades the soil quality. Nanotechnology is expected to optimize the current farming practices and mitigate some associated impacts. Layered double hydroxides (LDHs) are a class of nanomaterials with high potential for use in agricultural productions, mostly due to their sustained release of nutrients. Considering its novelty and lack of studies on the terrestrial ecosystem, it is essential to assess potential long-term harmful consequences to non-target organisms. Our study aimed to evaluate the effect of Zn-Al-NO3 LDH and Mg-Al-NO3 LDH ageing on the survival and reproduction of two soil invertebrate species Enchytraeus crypticus and Folsomia candida. We postulated that the toxicity of nanomaterials to soil invertebrates would change with time, such that the ageing of soil amendments would mediate their impacts on both species. Our results showed that the toxicity of LDHs was species-dependent, with Zn-Al-NO3 LDH being more toxic to E. crypticus, while Mg-Al-NO3 LDH affected more F. candida, especially in the last ageing period, where reproduction was the most sensitive biological parameter. The toxicity of both nanomaterials increased with ageing time, as shown by the decrease of the EC50 values over time. The influence of LDH dissolution and availability of Zn and Mg in the soil pore water was the main factor related to the toxicity, although we cannot rule out the influence of other structural constituents of LDHs (e.g., nitrates and aluminium). This study supports the importance of incorporating ageing in the ecotoxicity testing of nanomaterials, considering their slow release, as effects on soil organisms can change and lead to more severe impacts on the ecosystem functioning.


Assuntos
Fertilizantes , Oligoquetos , Poluentes do Solo , Solo , Animais , Fertilizantes/toxicidade , Poluentes do Solo/toxicidade , Solo/química , Oligoquetos/efeitos dos fármacos , Nanoestruturas/toxicidade , Reprodução/efeitos dos fármacos , Hidróxidos/toxicidade , Hidróxidos/química , Ecossistema , Invertebrados/efeitos dos fármacos
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