Discrete Models in Epidemiology: New Contagion Probability Functions Based on Real Data Behavior.

Mathematical modeling is a tool used for understanding diseases dynamics. The discrete-time model is an especial case in modeling that satisfactorily describes the epidemiological dynamics because of the discrete nature of the real data. However, discrete models reduce their descriptive and fitting potential because of assuming a homogeneous population. Thus, in this paper, we proposed contagion probability functions according to two infection paradigms that consider factors associated with transmission dynamics. For example, we introduced probabilities of establishing an infectious interaction, the number of contacts with infectious and the level of connectivity or social distance within populations. Through the probabilities design, we overcame the homogeneity assumption. Also, we evaluated the proposed probabilities through their introduction into discrete-time models for two diseases and different study zones with real data, COVID-19 for Germany and South Korea, and dengue for Colombia. Also, we described the oscillatory dynamics for the last one using the contagion probabilities alongside parameters with a biological sense. Finally, we highlight the implementation of the proposed probabilities would improve the simulation of the public policy effect of control strategies over an infectious disease outbreak.

A discrete model for the evaluation of public policies: The case of Colombia during the COVID-19 pandemic.

In mathematical epidemiology, it is usual to implement compartmental models to study the transmission of diseases, allowing comprehension of the outbreak dynamics. Thus, it is necessary to identify the natural history of the disease and to establish promissory relations between the structure of a mathematical model, as well as its parameters, with control-related strategies (real interventions) and relevant socio-cultural behaviors. However, we identified gaps between the model creation and its implementation for the use of decision-makers for policy design. We aim to cover these gaps by proposing a discrete mathematical model with parameters having intuitive meaning to be implemented to help decision-makers in control policy design. The model considers novel contagion probabilities, quarantine, and diffusion processes to represent the recovery and mortality dynamics. We applied mathematical model for COVID-19 to Colombia and some of its localities; moreover, the model structure could be adapted for other diseases. Subsequently, we implemented it on a web platform (MathCOVID) for the usage of decision-makers to simulate the effect of policies such as lock-downs, social distancing, identification in the contagion network, and connectivity among populations. Furthermore, it was possible to assess the effects of migration and vaccination strategies as time-dependent inputs. Finally, the platform was capable of simulating the effects of applying one or more policies simultaneously.

The Influence of Anthropogenic and Environmental Disturbances on Parameter Estimation of a Dengue Transmission Model.

Some deterministic models deal with environmental conditions and use parameter estimations to obtain experimental parameters, but they do not consider anthropogenic or environmental disturbances, e.g., chemical control or climatic conditions. Even more, they usually use theoretical or measured in-lab parameters without worrying about uncertainties in initial conditions, parameters, or changes in control inputs. Thus, in this study, we estimate parameters (including chemical control parameters) and confidence contours under uncertainty conditions using data from the municipality of Bello (Colombia) during 2010-2014, which includes two epidemic outbreaks. Our study shows that introducing non-periodic pulse inputs into the mathematical model allows us to: (i) perform parameter estimation by fitting real data of consecutive dengue outbreaks, (ii) highlight the importance of chemical control as a method of vector control, and (iii) reproduce the endemic behavior of dengue. We described a methodology for parameter and sub-contour box estimation under uncertainties and performed reliable simulations showing the behavior of dengue spread in different scenarios.

Identification of Hazard and Socio-Demographic Patterns of Dengue Infections in a Colombian Subtropical Region from 2015 to 2020: Cox Regression Models and Statistical Analysis.

Dengue is a disease of high interest for public health in the affected localities. Dengue virus is transmitted by Aedes species and presents hyperendemic behaviors in tropical and subtropical regions. Colombia is one of the countries most affected by the dengue virus in the Americas. Its central-west region is a hot spot in dengue transmission, especially the Department of Antioquia, which has suffered from multiple dengue outbreaks in recent years (2015-2016 and 2019-2020). In this article, we perform a retrospective analysis of the confirmed dengue cases in Antioquia, discriminating by both subregions and dengue severity from 2015 to 2020. First, we conduct an exploratory analysis of the epidemic data, and then a statistical survival analysis is carried out using a Cox regression model. Our findings allow the identification of the hazard and socio-demographic patterns of dengue infections in the Colombian subtropical region of Antioquia from 2015 to 2020.

An alternative model to explain the vectorial capacity using as example Aedes aegypti case in dengue transmission.

Vectorial capacity (VC), as a concept that describes the potential of a vector to transmit a pathogen, has had historical problems related to lacks in dimensional significance and high error propagation from parameters that take part in the model to output. Hence, values estimated with those equations are not sufficiently reliable to consider in control strategies or vector population study. In this paper, we propose a new VC model consistent at dimensional level, i.e., the definition and the equation of VC have same and consistent units, with a parameter estimation method and mathematical structure that reduces the uncertainty in model output, using as a case of study an Aedes aegypti population of the municipality of Bello, Colombia. After a literature review, we selected one VC equation following biological, measurability and dimensional criteria, then we rendered a local and global sensitivity analysis, identifying the mortality rate of mosquitoes as a target component of the equation. Thus, we studied the Weibull and Exponential distributions as probabilistic models that represent the expectation of mosquitoes infective life, intending to include the best distribution in a selected VC structure. The proposed mortality rate estimation method includes a new parameter that represents an increase or decrease in vector mortality, as it may apply. We noticed that its estimation reduces the uncertainty associated with the expectation of mosquitoes' infective life expression, which also reduces the output range and variance in almost a half.