Testing plastomes and nuclear ribosomal DNA sequences as the next-generation DNA barcodes for species identification and phylogenetic analysis in Acer.

BACKGROUND: Acer is a taxonomically intractable and speciose genus that contains over 150 species. It is challenging to distinguish Acer species only by morphological method due to their abundant variations. Plastome and nuclear ribosomal DNA (nrDNA) sequences are recommended as powerful next-generation DNA barcodes for species discrimination. However, their efficacies were still poorly studied. The current study will evaluate the application of plastome and nrDNA in species identification and perform phylogenetic analyses for Acer. RESULT: Based on a collection of 83 individuals representing 55 species (c. 55% of Chinese species) from 13 sections, our barcoding analyses demonstrated that plastomes exhibited the highest (90.47%) species discriminatory power among all plastid DNA markers, such as the standard plastid barcodes matK + rbcL + trnH-psbA (61.90%) and ycf1 (76.19%). And the nrDNA (80.95%) revealed higher species resolution than ITS (71.43%). Acer plastomes show abundant interspecific variations, however, species identification failure may be due to the incomplete lineage sorting (ILS) and chloroplast capture resulting from hybridization. We found that the usage of nrDNA contributed to identifying those species that were unidentified by plastomes, implying its capability to some extent to mitigate the impact of hybridization and ILS on species discrimination. However, combining plastome and nrDNA is not recommended given the cytonuclear conflict caused by potential hybridization. Our phylogenetic analysis covering 19 sections (95% sections of Acer) and 128 species (over 80% species of this genus) revealed pervasive inter- and intra-section cytonuclear discordances, hinting that hybridization has played an important role in the evolution of Acer. CONCLUSION: Plastomes and nrDNA can significantly improve the species resolution in Acer. Our phylogenetic analysis uncovered the scope and depth of cytonuclear conflict in Acer, providing important insights into its evolution.

Impact of the climatic changes in the Pliocene-Pleistocene transition on Irano-Turanian species. The radiation of genus Jurinea (Compositae).

The Irano-Turanian region is one of the world's richest floristic regions and the centre of diversity for numerous xerophytic plant lineages. However, we still have limited knowledge on the timing of evolution and biogeographic history of its flora, and potential drivers of diversification remain underexplored. To fill this knowledge gap, we focus on the Eurasian genus Jurinea (ca. 200 species), one of the largest plant radiations that diversified in the region. We applied a macroevolutionary integrative approach to explicitly test diversification hypotheses and investigate the relative roles of geography vs. ecology and niche conservatism vs. niche lability in speciation processes. To do so, we gathered a sample comprising 77% of total genus richness and obtained data about (1) its phylogenetic history, recovering 502 nuclear loci sequences; (2) growth forms; (3) ecological niche, compiling data of 21 variables for more than 2500 occurrences; and (4) paleoclimatic conditions, to estimate climatic stability. Our results revealed that climate was a key factor in the evolutionary dynamics of Jurinea. The main diversification and biogeographic events that occurred during past climate changes, which led to colder and drier conditions, are the following: (1) the origin of the genus (10.7 Ma); (2) long-distance dispersals from the Iranian Plateau to adjacent regions (∼7-4 Ma); and (3) the diversification shift during Pliocene-Pleistocene Transition (ca. 3 Ma), when net diversification rate almost doubled. Our results supported the pre-adaptation hypothesis, i.e., the evolutionary success of Jurinea was linked to the retention of the ancestral niche adapted to aridity. Interestingly, the paleoclimatic analyses revealed that in the Iranian Plateau long-term climatic stability favoured old-lineage persistence, resulting in current high species richness of semi-arid and cold adapted clades; whereas moderate climate oscillations stimulated allopatric diversification in the lineages distributed in the Circumboreal region. In contrast, growth form lability and high niche disparity among closely related species in the Central Asian clade suggest adaptive radiation to mountain habitats. In sum, the radiation of Jurinea is the result of both adaptive and non-adaptive processes influenced by climatic, orogenic and ecological factors.

Phylogeny, origin, and dispersal of Dubyaea (Asteraceae) based on Hyb-Seq data.

Dubyaea DC. is a small genus of Asteraceae that is almost exclusively endemic to the Pan-Himalayan region. Within Dubyaea, phylogenetic relationships remain poorly understood. Here, our well-supported phylogeny based on Hyb-Seq data shows that all samples of Dubyaea in this study belong to a monophyletic group, which is sister to the clade of Soroseris, Syncalathium, and Nabalus. Dubyaea (s. str.) can be divided into three major clades, which are supported by flower color as well as morphological features of the stems and basal leaves. Based on our phylogenetic results, we performed biogeographic analyses and inferred that Dubyaea arose in the late Miocene in Hengduan Mountains and its eastern areas. Following its evolutionary origin, Dubyaea underwent diversification in situ as well as spread to the Himalayas.

Phylogeny, origin and dispersal of Saussurea (Asteraceae) based on chloroplast genome data.

Saussurea is one of the largest genera of the tribe Cardueae of Asteraceae, comprising about 460 species from the Northern Hemisphere with most species distributed in QTPss and adjacent areas. Here, we established a well-supported phylogenetic framework for Saussurea based on whole chloroplast genomes of 136 taxa plus 16 additional taxa of Cardueae using Bayesian inference and Maximum Likelihood. Our phylogenetic results are inconsistent with previous subgeneric classifications of Saussurea. We nearly completely delimited subgen. Eriocoryne, and found that subgen. Theodorea, subgen. Saussurea section Laguranthera and Rosulascentes are closely related to each other. Based on our phylogenetic results, we performed biogeographic analyses and inferred that the genus Saussurea arose during early-middle Miocene within the Hengduan Mountains. We expect that landscape heterogeneity within the QTPss and adjacent areas, such as the Hengduan Mountains, played an important role in the evolution of Saussurea. Following its evolutionary origin, the genus underwent rapid diversification in situs and dispersed northwards in several migrational patterns. Both continuous uplift of the QTPss and adjacent areas as well as global cooling since mid-Miocene probably led to geographic expansion and diffusion of Saussurea, with the latter, in particular, resulting in the northward dispersal.

[Research of front-end speech enhancement and beamforming algorithm based on dual microphoneforcochlear implant].

Speech enhancement methods based on microphone array adopt many microphones to record speech signal simultaneously. As spatial information is increased, these methods can increase speech recognition for cochlear implant in noisy environment. Due to the size limitation, the number of microphones used in the cochlear implant cannot be too large, which limits the design of microphone array beamforming. To balance the size limitation of cochlear implant and the spatial orientation information of the signal acquisition, we propose a speech enhancement and beamforming algorithm based on dual thin uni-directional / omni-directional microphone pairs (TP) in this paper. Each TP microphone contains two sound tubes for signal acquisition, which increase the overall spatial orientation information. In this paper, we discuss the beamforming characteristics with different gain vectors and the influence of the inter-microphone distance on beamforming, which provides valuable theoretical analysis and engineering parameters for the application of dual microphone speech enhancement technology in cochlear implants.

[Research progress of microphone array based front-end speech enhancement technology for cochlear implant].

Microphone array based methods are gradually applied in the front-end speech enhancement and speech recognition improvement for cochlear implant in recent years. By placing several microphones in different locations in space, this method can collect multi-channel signals containing a lot of spatial position and orientation information. Microphone array can also yield specific beamforming mode to enhance desired signal and suppress ambient noise, which is particularly suitable to be applied in face-to-face conversation for cochlear implant users. And its application value has attracted more and more attention from researchers. In this paper, we describe the principle of microphone array method, analyze the microphone array based speech enhancement technologies in present literature, and further present the technical difficulties and development trend.

[Research on spectrum feature of speech processing strategy for cochlear implant].

Cochlear implant (CI) in present Chinese environment will lose pitch information and result in low speech recognition. In order to research Chinese feature-based speech processing strategy for cochlear implant contrapuntally and to improve the speech recognition for CI recipients, we improve the CI front-end signal acquisition platform and research the signal features. Our search includes the waveform, spectrogram, energy intensity, pitch and formant parameters for different speech processing strategies of cochlear implant. Features in two kinds of speech processing strategies are analyzed and extracted for the study of parameter characteristics. Therefore, the proposed aim of this paper is to extend the research on Chinese-based CI speech processing strategy.

Strategy and Technical Progress of Recycling of Spent Vanadium-Titanium-Based Selective Catalytic Reduction Catalysts.

Selective catalytic reduction denitration technology, abbreviated as SCR, is essential for the removal of nitrogen oxide from the flue gas of coal-fired power stations and has been widely used. Due to the strong demand for energy and the requirements for environmental protection, a large amount of SCR catalyst waste is produced. The spent SCR catalyst contains high-grade valuable metals, and proper disposal or treatment of the SCR catalyst can protect the environment and realize resource recycling. This review focuses on the two main routes of regeneration and recycling of spent vanadium-titanium SCR catalysts that are currently most widely commercially used and summarizes in detail the technologies of recycling, high-efficiency recycling, and recycling of valuable components of spent vanadium-titanium SCR catalysts. This review also discusses in depth the future development direction of recycling spent vanadium-titanium SCR catalysts. It provides a reference for promoting recycling, which is crucial for resource recovery and green and low-carbon development.

Broadband beamforming compensation algorithm in CI front-end acquisition.

BACKGROUND: To increase the signal to noise ratio (SNR) and to suppress directional noise in front-end signal acquisition, microphone array technologies are being applied in the cochlear implant (CI). Due to size constraints, the dual microphone-based system is most suitable for actual application. However, direct application of the array technology will result in the low frequency roll-off problem, which can noticeably distort the desired signal. METHODS: In this paper, we theoretically analyze the roll-off characteristic on the basis of CI parameters and present a new low-complexity compensation algorithm. We obtain the linearized frequency response of the two-microphone array from modeling and analysis for further algorithm realization. REALIZATION AND RESULTS: Linear method was used to approximate the theoretical response with adjustable delay and weight parameters. A CI dual-channel hardware platform is constructed for experimental research. Experimental results show that our algorithm performs well in compensation and realization. DISCUSSIONS: We discuss the effect from environment noise. Actual daily noise with more low-frequency energy will weaken the algorithm performance. A balance between low-frequency distortion and corresponding low-frequency noise need to be considered. CONCLUSIONS: Our novel compensation algorithm uses linear function to obtain the desired system response, which is a low computational-complexity method for CI real-time processing. Algorithm performance is tested in CI CIS modulation and the influence of experimental distance and environmental noise were further analyzed to evaluate algorithm constraint.

Interface Effects on Magnetic Flux Pinning in La0.7Sr0.3MnO3/YBa 2Cu3O7-x Bilayers.

The magnetic pinning properties of a ferromagnet/superconductor hybrid structure consisting of a La0.7Sr0.3MnO3(LSMO) layer with various thicknesses on top of a fixed thickness YBa2Cu3O7-x (YBCO) layer are investigated in this article. The existence of a weakly magnetic layer was identified at the interface between YBCO and LSMO by a ferromagnetic resonance (FMR) study. Magnetic moment and anisotropy of the interfacial layer were probed using the angular-dependent FMR study. This layer gives rise to an additional flux pinning contribution to the bulk magnetic pinning from the LSMO layer. Our study provides insight into the complex interface physics in the LSMO/YBCO bilayer system, promoting a new pathway for the development of novel flux pinning-related functionality.

Real-time spectrum estimation-based dual-channel speech-enhancement algorithm for cochlear implant.

BACKGROUND: Improvement of the cochlear implant (CI) front-end signal acquisition is needed to increase speech recognition in noisy environments. To suppress the directional noise, we introduce a speech-enhancement algorithm based on microphone array beamforming and spectral estimation. The experimental results indicate that this method is robust to directional mobile noise and strongly enhances the desired speech, thereby improving the performance of CI devices in a noisy environment. METHODS: The spectrum estimation and the array beamforming methods were combined to suppress the ambient noise. The directivity coefficient was estimated in the noise-only intervals, and was updated to fit for the mobile noise. RESULTS: The proposed algorithm was realized in the CI speech strategy. For actual parameters, we use Maxflat filter to obtain fractional sampling points and cepstrum method to differentiate the desired speech frame and the noise frame. The broadband adjustment coefficients were added to compensate the energy loss in the low frequency band. DISCUSSIONS: The approximation of the directivity coefficient is tested and the errors are discussed. We also analyze the algorithm constraint for noise estimation and distortion in CI processing. The performance of the proposed algorithm is analyzed and further be compared with other prevalent methods. CONCLUSIONS: The hardware platform was constructed for the experiments. The speech-enhancement results showed that our algorithm can suppresses the non-stationary noise with high SNR. Excellent performance of the proposed algorithm was obtained in the speech enhancement experiments and mobile testing. And signal distortion results indicate that this algorithm is robust with high SNR improvement and low speech distortion.

Advanced genome-editing technologies enable rapid and large-scale generation of genetic variants for strain engineering and synthetic biology.

Targeted genome editing not only improves our understanding of fundamental rules in life sciences but also affords us versatile toolkits to improve industrially relevant phenotypes in various host cells. In this review, we summarize the recent endeavor to develop efficient genome-editing tools, and emphasize the utility of these tools to generate massive scale of genetic variants. We categorize these tools into traditional recombination-based tools, and more advanced CRISPR as well as RNA-based genome-editing tools. This diverse panel of sophisticated tools has been applied to accelerate strain engineering, upgrade biomanufacturing, and customize biosensing. In parallel with high-throughput phenotyping and AI-based optimization algorithms, we envision that genome-editing technologies will become a driving force to automate and streamline biological engineering, and empower us to address critical challenges in health, environment, energy, and sustainability.

Correlation of grain orientations and the thickness of gradient MoS2 films.

In this study, we synthesized gradient MoS2 films with a home-made suspended mask and characterized them by transmission electron microscopy (TEM) and Raman spectroscopy. The advantage of using gradient films is to simultaneously produce numerous samples under the same growth condition but with different thicknesses. The cross-sectional TEM images and their Fourier transform spectra revealed the thickness dependency of the grain orientations for synthetic MoS2 films. Combining the TEM results and the data of Raman A1g and E1 2g peaks, we found the correlation between the grain orientation and the A1g/E1 2g peak area ratio. We demonstrated the potential of using the non-polarized Raman Spectroscopy to characterize the grain structures of synthetic MoS2 films.

Respiratory tract infections in children with allergic asthma on allergen immunotherapy during influenza season.

To describle how respiratory tract infections (RTIs) that occurred in children with allergic asthma (AA) on allergen immunotherapy (AIT) during an influenza season. Data including clinical symptoms and treatment history of children (those with AA on AIT and their siblings under 14 years old), who suffered from RTIs during an influenza season (Dec 1st, 2019-Dec 31st, 2019), were collected (by face to face interview and medical records) and analyzed. Children on AIT were divided into 2 groups: stage 1 (dose increasing stage) and stage 2 (dose maintenance stage). Their siblings were enrolled as control. During the study period, 49 children with AA on AIT (33 patients in stage 1 and 16 patients in stage 2) as well as 49 children without AA ( their siblings ) were included. There were no significant differences in occurrences of RTIs among the three groups (p > 0.05). Compared with children in the other two groups, patients with RTIs in stage 2 had less duration of coughing and needed less medicine. Children on AIT with maintenance doses had fewer symptoms and recovered quickly when they were attacked by RTIs, which suggested that AIT with dose maintenance may enhance disease resistance of the body.

2-Methyl-3-nitro-benzyl cyanide.

The title compound, C(9)H(8)N(2)O, was prepared from o-xylene by nitration, oxidation, hydrolysis, reduction, chlorination and cyanation. There are two mol-ecules in the asymmetric unit with a dihedral angle of 20.15 (7)° between their aromatic rings.

2-Amino-6-nitro-1H-benzoimidazol-3-ium chloride.

In the cation of the title compound, C(7)H(7)N(4)O(2) (+)·Cl(-), the benzimidazole ring system is planar with a maximum deviation of -0.019 (3) Å. In the crystal structure, C-H⋯Cl, N-H⋯Cl, and N-H⋯Cl inter-actions link the mol-ecules into a two-dimensional network. π-π contacts between benzimidazole rings [centroid-centroid distances = 3.928 (1) and 3.587 (1) Å] may further stabilize the structure.

(2-Methyl-3-nitro-phen-yl)methanol.

The asymmetric unit of the title compound, C(8)H(9)NO(3), contains two crystallographically independent mol-ecules, whose aromatic rings are oriented at a dihedral angle of 83.29 (3)°. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into chains.

[Studies on the lowering blood sugar substances from agrimony].

OBJECTIVE: To isolate and identify the chemical constituents from the active section lowering blood sugar of agrimony. METHODS: The compounds were separated by repeated silica gel, Sephadex LH-20 and HPLC chromatographies. The structures of compounds isolated were identified by analysis of their spectral data and chemical properties. RESULTS: Nine compounds were isolated from the active section with lowering blood sugar of agrimony and their structures were identified as apigenin-7-O-3-D-glucopyranoside (1), catechin (2), quercetin (3), rutin (4), kaempferol-3-O-alpha-L-rhamnoside (5), Kampferol-3-O-beta-D-glucopyranoside (6), lutcolin-7-O-beta-D-glucopyranosidc (7), 19alpha, 24-dihydroxy ursolic acid (8), 3,3'-di-O-mcthyl ellagic acid4-O-beta-D-glucopyranoside (9). CONCLUSION: Compounds 1, 7, 8, 9 are isolated from thia plant for the first time.

Novel oxazabicycles as a new class of photochromic colorants.

A new photochromic colorant with an oxazabicyclic moiety has been synthesized by an efficient method. It turns pale red upon UV irradiation and undergoes reverse reaction while being heated. This work may open an exciting new avenue for future development of the photochromic dyes with novel molecular structures.

4-Bromo-2,6-dimethyl-anilinium bromide monohydrate.

In the title compound, C(8)H(11)BrN(+)·Br(-)·H(2)O, a network of N-H⋯O, N-H⋯Br and O-H⋯Br hydrogen bonds helps to consolidate the crystal packing.