Pesquisa | Portal de Pesquisa da BVS Enfermagem

1.

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments.

Choi, Meena; Eren-Dogu, Zeynep F; Colangelo, Christopher; Cottrell, John; Hoopmann, Michael R; Kapp, Eugene A; Kim, Sangtae; Lam, Henry; Neubert, Thomas A; Palmblad, Magnus; Phinney, Brett S; Weintraub, Susan T; MacLean, Brendan; Vitek, Olga.

J Proteome Res ; 16(2): 945-957, 2017 02 03.

Artigo em Inglês | MEDLINE | ID: mdl-27990823

2.

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Chalkley, Robert J; Bandeira, Nuno; Chambers, Matthew C; Clauser, Karl R; Cottrell, John S; Deutsch, Eric W; Kapp, Eugene A; Lam, Henry H N; McDonald, W Hayes; Neubert, Thomas A; Sun, Rui-Xiang.

Mol Cell Proteomics ; 13(1): 360-71, 2014 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-24187338

3.

A standardized framing for reporting protein identifications in mzIdentML 1.2.

Seymour, Sean L; Farrah, Terry; Binz, Pierre-Alain; Chalkley, Robert J; Cottrell, John S; Searle, Brian C; Tabb, David L; Vizcaíno, Juan Antonio; Prieto, Gorka; Uszkoreit, Julian; Eisenacher, Martin; Martínez-Bartolomé, Salvador; Ghali, Fawaz; Jones, Andrew R.

Proteomics ; 14(21-22): 2389-99, 2014 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-25092112

4.

Hierarchical clustering of shotgun proteomics data.

Koskinen, Ville R; Emery, Patrick A; Creasy, David M; Cottrell, John S.

Mol Cell Proteomics ; 10(6): M110.003822, 2011 Jun.

Artigo em Inglês | MEDLINE | ID: mdl-21447708

5.

Response to: the problem with peptide presumption and low Mascot scoring.

Cottrell, John S; Creasy, David M.

J Proteome Res ; 10(11): 5272-3, 2011 Nov 04.

Artigo em Inglês | MEDLINE | ID: mdl-21942731

6.

Cerebral Microangiopathy in Leukoencephalopathy With Cerebral Calcifications and Cysts: A Pathological Description.

Helman, Guy; Viaene, Angela N; Takanohashi, Asako; Breur, Marjolein; Berger, Rebecca; Woidill, Sarah; Cottrell, John R; Schiffmann, Raphael; Crow, Yanick J; Simons, Cas; Bugiani, Marianna; Vanderver, Adeline.

J Child Neurol ; 36(2): 133-140, 2021 02.

Artigo em Inglês | MEDLINE | ID: mdl-32988269

7.

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

Eisenacher, Martin; Martens, Lennart; Hardt, Tanja; Kohl, Michael; Barsnes, Harald; Helsens, Kenny; Häkkinen, Jari; Levander, Fredrik; Aebersold, Ruedi; Vandekerckhove, Joël; Dunn, Michael J; Lisacek, Frederique; Siepen, Jennifer A; Hubbard, Simon J; Binz, Pierre-Alain; Blüggel, Martin; Thiele, Herbert; Cottrell, John; Meyer, Helmut E; Apweiler, Rolf; Stephan, Christian.

Proteomics ; 9(15): 3928-33, 2009 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-19637238

8.

Nuclear translocation of adenoviral-enhanced yellow fluorescent protein-tagged-human constitutive androstane receptor (hCAR): a novel tool for screening hCAR activators in human primary hepatocytes.

Li, Haishan; Chen, Tao; Cottrell, John; Wang, Hongbing.

Drug Metab Dispos ; 37(5): 1098-106, 2009 May.

Artigo em Inglês | MEDLINE | ID: mdl-19196842

9.

Protein identification using MS/MS data.

Cottrell, John S.

J Proteomics ; 74(10): 1842-51, 2011 Sep 06.

Artigo em Inglês | MEDLINE | ID: mdl-21635977

10.

Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis.

Schweitzer, Mary H; Zheng, Wenxia; Organ, Chris L; Avci, Recep; Suo, Zhiyong; Freimark, Lisa M; Lebleu, Valerie S; Duncan, Michael B; Vander Heiden, Matthew G; Neveu, John M; Lane, William S; Cottrell, John S; Horner, John R; Cantley, Lewis C; Kalluri, Raghu; Asara, John M.

Science ; 324(5927): 626-31, 2009 May 01.

Artigo em Inglês | MEDLINE | ID: mdl-19407199

11.

John Cottrell, David Creasy & Darryl Pappin. Interview by H. Craig Mak.

Cottrell, John; Creasy, David; Pappin, Darryl.

Nat Biotechnol ; 30(10): 963, 2012 Oct.

Artigo em Inglês | MEDLINE | ID: mdl-23051816

12.

Inflammation and IGF-I activate the Akt pathway in breast cancer.

Prueitt, Robyn L; Boersma, Brenda J; Howe, Tiffany M; Goodman, Julie E; Thomas, Douglas D; Ying, Lei; Pfiester, Candice M; Yfantis, Harris G; Cottrell, John R; Lee, Dong H; Remaley, Alan T; Hofseth, Lorne J; Wink, David A; Ambs, Stefan.

Int J Cancer ; 120(4): 796-805, 2007 Feb 15.

Artigo em Inglês | MEDLINE | ID: mdl-17096325

13.

Unimod: Protein modifications for mass spectrometry.

Creasy, David M; Cottrell, John S.

Proteomics ; 4(6): 1534-6, 2004 Jun.

Artigo em Inglês | MEDLINE | ID: mdl-15174123

14.

Error tolerant searching of uninterpreted tandem mass spectrometry data.

Creasy, David M; Cottrell, John S.

Proteomics ; 2(10): 1426-34, 2002 Oct.

Artigo em Inglês | MEDLINE | ID: mdl-12422359

15.

Esophagin and proliferating cell nuclear antigen (PCNA) are biomarkers of human esophageal neoplastic progression.

Kimos, Martha C; Wang, Suna; Borkowski, Andrew; Yang, Guang-Yu; Yang, Chung S; Perry, Kellie; Olaru, Andreea; Deacu, Elena; Sterian, Anca; Cottrell, John; Papadimitriou, John; Sisodia, Lopa; Selaru, Florin M; Mori, Yuriko; Xu, Yan; Yin, Jing; Abraham, John M; Meltzer, Stephen J.

Int J Cancer ; 111(3): 415-7, 2004 Sep 01.

Artigo em Inglês | MEDLINE | ID: mdl-15221970

16.

The PSI-MOD community standard for representation of protein modification data.

Montecchi-Palazzi, Luisa; Beavis, Ron; Binz, Pierre-Alain; Chalkley, Robert J; Cottrell, John; Creasy, David; Shofstahl, Jim; Seymour, Sean L; Garavelli, John S.

Nat Biotechnol ; 26(8): 864-6, 2008 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-18688235

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