Hidden role of intermolecular proton transfer in the anomalously diffuse vibrational spectrum of a trapped hydronium ion.

We report the vibrational spectra of the hydronium and methyl-ammonium ions captured in the C3v binding pocket of the 18-crown-6 ether ionophore. Although the NH stretching bands of the CH3NH3+ ion are consistent with harmonic expectations, the OH stretching bands of H3O+ are surprisingly broad, appearing as a diffuse background absorption with little intensity modulation over 800 cm-1 with an onset ∼400 cm-1 below the harmonic prediction. This structure persists even when only a single OH group is present in the HD2O+ isotopologue, while the OD stretching region displays a regular progression involving a soft mode at about 85 cm-1 These results are rationalized in a vibrationally adiabatic (VA) model in which the motion of the H3O+ ion in the crown pocket is strongly coupled with its OH stretches. In this picture, H3O+ resides in the center of the crown in the vibrational zero-point level, while the minima in the VA potentials associated with the excited OH vibrational states are shifted away from the symmetrical configuration displayed by the ground state. Infrared excitation between these strongly H/D isotope-dependent VA potentials then accounts for most of the broadening in the OH stretching manifold. Specifically, low-frequency motions involving concerted motions of the crown scaffold and the H3O+ ion are driven by a Franck-Condon-like mechanism. In essence, vibrational spectroscopy of these systems can be viewed from the perspective of photochemical interconversion between transient, isomeric forms of the complexes corresponding to the initial stage of intermolecular proton transfer.

Vibrational Characterization of Radical Ion Adducts between Imidazole and CO2.

We address the molecular level origins of the dramatic difference in the catalytic mechanisms of CO2 activation by the seemingly similar molecules pyridine (Py) and imidazole (Im). This is accomplished by comparing the fundamental interactions of CO2 radical anions with Py and Im in the isolated, gas phase PyCO2- and ImCO2- complexes. These species are prepared by condensation of the neutral compounds onto a (CO2) n- cluster ion beam by entrainment in a supersonic jet ion source. The structures of the anionic complexes are determined by theoretical analysis of their vibrational spectra, obtained by IR photodissociation of weakly bound CO2 molecules in a photofragmentation mass spectrometer. Although the radical PyCO2- system adopts a carbamate-like configuration corresponding to formation of an N-C covalent bond, the ImCO2- species is revealed to be best described as an ion-molecule complex in which an oxygen atom in the CO2- radical anion is H-bonded to the NH group. Species that feature a covalent N-C interaction in ImCO2- are calculated to be locally stable structures, but are much higher in energy than the largely electrostatically bound ion-molecule complex. These results support the suggestion from solution phase electrochemical studies (Bocarsly et al. ACS Catal. 2012, 2, 1684-1692) that the N atoms are not directly involved in the catalytic activation of CO2 by Im.

Communication: Spectroscopic characterization of a strongly interacting C(2)H group on the EMIM+ cation in the (EMIM+)2X- (X = BF4, Cl, Br, and I) ternary building blocks of ionic liquids.

To unravel the intermolecular interactions at play in the assemblies of EMIM-based ionic liquids, we report the vibrational spectra of the cryogenically cooled, cationic ternary complexes with halide ions, (EMIM+)2X-, X = Cl, Br, and I. This series specifically addresses the spectral response of the acidic C(2)H group upon complexation with an atomic anion, which is isolated by selective deuteration at this position. Unlike the behavior of the related BF4- complex, the halide systems display large (∼175 cm-1) red-shifts and dramatic (∼30X) intensity enhancements in the C(2)D stretch (relative to that of the bare d(2)-EMIM+ cation), which are largest for the chloride anion. Electronic structure calculations indicate that, while the spectroscopic signatures of the interaction follow those expected for a traditional hydrogen bond to the C(2)H group, the C-H-X docking arrangement deviates substantially from linearity due to a "double contact" motif involving a weaker interaction to the nearby methyl group [Hunt et al., Chem. Soc. Rev. 44(5), 1257-1288 (2015)].

Alkali-Controlled C-H Cleavage or N-C Bond Formation by N2-Derived Iron Nitrides and Imides.

Formation of N-H and N-C bonds from functionalization of N2 is a potential route to utilization of this abundant resource. One of the key challenges is to make the products of N2 activation reactive enough to undergo further reactions under mild conditions. This paper explores the strategy of "alkali control," where the presence of an alkali metal cation enables the reduction of N2 under mild conditions, and then chelation of the alkali metal cation uncovers a highly reactive species that can break benzylic C-H bonds to give new N-H and Fe-C bonds. The ability to "turn on" this C-H activation pathway with 18-crown-6 is demonstrated with three different N2 reduction products of N2 cleavage in an iron-potassium system. The alkali control strategy can also turn on an intermolecular reaction of an N2-derived nitride with methyl tosylate that gives a new N-C bond. Since the transient K(+)-free intermediate reacts with this electrophile but not with the weak C-H bonds in 1,4-cyclohexadiene, it is proposed that the C-H cleavage occurs by a deprotonation mechanism. The combined results demonstrate that a K(+) ion can mask the latent nucleophilicity of N2-derived nitride and imide ligands within a trimetallic iron system and points a way toward control over N2 functionalization.

Capture of CO2 by a Cationic Nickel(I) Complex in the Gas Phase and Characterization of the Bound, Activated CO2 Molecule by Cryogenic Ion Vibrational Predissociation Spectroscopy.

We describe a systematic method for the preparation and spectroscopic characterization of a CO2 molecule coordinated to an activated bisphenoidal nickel(I) compound containing a tetraazamacrocyclic ligand in the gas phase. The resulting complex was then structurally characterized by using mass-selected vibrational predissociation spectroscopy. The results indicate that a highly distorted CO2 molecule is bound to the metal center in an η(2)-C,O coordination mode, thus establishing an efficient and rational method for the preparation of metal-activated CO2 for further studies using ion chemistry techniques.

Identification and Partial Structural Characterization of Mass Isolated Valsartan and Its Metabolite with Messenger Tagging Vibrational Spectroscopy.

Recent advances in the coupling of vibrational spectroscopy with mass spectrometry create new opportunities for the structural characterization of metabolites with great sensitivity. Previous studies have demonstrated this scheme on 300 K ions using very high power free electron lasers in the fingerprint region of the infrared. Here we extend the scope of this approach to a single investigator scale as well as extend the spectral range to include the OH stretching fundamentals. This is accomplished by detecting the IR absorptions in a linear action regime by photodissociation of weakly bound N2 molecules, which are attached to the target ions in a cryogenically cooled, rf ion trap. We consider the specific case of the widely used drug Valsartan and two isomeric forms of its metabolite. Advantages and challenges of the cold ion approach are discussed, including disentangling the role of conformers and the strategic choices involved in the selection of the charging mechanism that optimize spectral differentiation among candidate structural isomers. In this case, the Na+ complexes are observed to yield sharp resonances in the high frequency NH and OH stretching regions, which can be used to easily differentiate between two isomers of the metabolite. Graphical Abstract ᅟ.

Preparation of Labile Ni+(cyclam) Cations in the Gas Phase Using Electron-Transfer Reduction through Ion-Ion Recombination in an Ion Trap and Structural Characterization with Vibrational Spectroscopy.

Gas-phase ion chemistry methods that capture and characterize the degree of activation of small molecules in the active sites of homogeneous catalysts form a powerful new tool to unravel how ligand environments affect reactivity. A key roadblock in this development, however, is the ability to generate the fragile metal oxidation states that are essential for catalytic activity. Here we demonstrate the preparation of the key Ni(I) center in the widely used cyclam scaffold using ion-ion recombination as a gas-phase alternative to electrochemical reduction. The singly charged Ni+(cyclam) coordination complex is generated by electron transfer from fluoranthene and azobenzene anions to doubly charged Ni2+(cyclam), using the electron-transfer dissociation protocol in a commercial quadrupole ion trap instrument and in a custom-built octopole RF ion trap. The successful preparation of the Ni+(cyclam) cation is verified through analysis of its vibrational spectrum obtained using the infrared free electron laser FELIX.

Catalytic Oxygen Evolution from Manganese Complexes with an Oxidation-Resistant N,N,O-Donor Ligand.

There is great interest in developing Mn water-splitting catalysts due to their low cost, abundance, and relevance to the oxygen-evolving complex (OEC). Three ligands with highly donating pyridine alkoxide moieties, including 2-(pyridin-2-yl)propan-2-ol (pyalkH), 2,2'-(pyridine-2,6-diyl)bis(propan-2-ol) (py-dialkH2 ), and 2-[(2,2'-bipyridin)-6-yl]propan-2-ol (bipy-alkH), have been screened with Mn for oxygen-evolution catalysis. Complexes with the ligand bipy-alkH were shown to evolve O2 when driven by Oxone (potassium peroxymonosulfate). The catalytic mixture generated from the precursor complex [Mn(bipy-alkH)Cl2 ] retained activity in unbuffered solution beyond 160 h.

Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US.

The accumulation of independent mutations over time in two populations often leads to reproductive isolation. Reproductive isolation between diverging populations may be reinforced by barriers that occur either pre- or postzygotically. Hybrid sterility is the most common form of postzygotic isolation in plants. Four postzygotic sterility loci, comprising three hybrid sterility systems (Sa, s5, DPL), have been recently identified in Oryza sativa. These loci explain, in part, the limited hybridization that occurs between the domesticated cultivated rice varieties, O. sativa spp. japonica and O. sativa spp. indica. In the United States, cultivated fields of japonica rice are often invaded by conspecific weeds that have been shown to be of indica origin. Crop-weed hybrids have been identified in crop fields, but at low frequencies. Here we examined the possible role of these hybrid incompatibility loci in the interaction between cultivated and weedy rice. We identified a novel allele at Sa that seemingly prevents loss of fertility in hybrids. Additionally, we found wide-compatibility type alleles at strikingly high frequencies at the Sa and s5 loci in weed groups, and a general lack of incompatible alleles between crops and weeds at the DPL loci. Our results suggest that weedy individuals, particularly those of the SH and BRH groups, should be able to freely hybridize with the local japonica crop, and that prezygotic factors, such as differences in flowering time, have been more important in limiting weed-crop gene flow in the past. As the selective landscape for weedy rice changes due to increased use of herbicide resistant strains of cultivated rice, the genetic barriers that hinder indica-japonica hybridization cannot be counted on to limit the flow of favorable crop genes into weeds.

The effect of standing acoustic waves on the formation of laser-induced air plasmas.

The expected location of an air plasma produced by a focused YAG laser pulse has been found to be influenced by the acoustics of the surrounding environment. In open air, the expected location of a laser-induced air plasma is centered close to the focal point of the lens focusing the laser beam. When confining the same beam coaxially along the interior of a quartz tube, the expected location of the air plasma shifts away from the focal point, toward the focusing lens, in a region of less laser fluence. This shift is caused by an interaction between standing acoustic waves (formed from sound waves produced by previous laser-induced plasmas) and the impinging laser pulse. Standing acoustic waves in a tube produce areas (antinodes) of slightly higher and slightly lower pressure than ambient atmospheric conditions, that in turn have a noticeable affect on the probability of creating an air plasma at a given location. This leads to two observed phenomena: Increased probability of air plasma formation before the optical focal point is reached, and the formation of distinct (separate) air plasmas at the antinodes themselves.