Detalhe da pesquisa
1.
MinActionPath2: path generation between different conformations of large macromolecular assemblies by action minimization.
Nucleic Acids Res
; 2024 May 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-38783081
2.
Reclassification of family A DNA polymerases reveals novel functional subfamilies and distinctive structural features.
Nucleic Acids Res
; 51(9): 4488-4507, 2023 05 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-37070157
3.
Structural dynamics and determinants of 2-aminoadenine specificity in DNA polymerase DpoZ of vibriophage ÏVC8.
Nucleic Acids Res
; 49(20): 11974-11985, 2021 11 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-34751404
4.
Structural basis for allosteric transitions of a multidomain pentameric ligand-gated ion channel.
Proc Natl Acad Sci U S A
; 117(24): 13437-13446, 2020 06 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-32482881
5.
Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases.
PLoS Biol
; 17(1): e3000122, 2019 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30657780
6.
Parameterizing elastic network models to capture the dynamics of proteins.
J Comput Chem
; 42(23): 1643-1661, 2021 09 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34117647
7.
Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus.
J Chem Inf Model
; 61(10): 4832-4838, 2021 10 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-34652149
8.
Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation.
Proc Natl Acad Sci U S A
; 115(17): E3959-E3968, 2018 04 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-29632192
9.
Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel.
Proc Natl Acad Sci U S A
; 115(52): E12172-E12181, 2018 12 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-30541892
10.
Structural evidence for an in trans base selection mechanism involving Loop1 in polymerase µ at an NHEJ double-strand break junction.
J Biol Chem
; 294(27): 10579-10595, 2019 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-31138645
11.
Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel.
PLoS Biol
; 15(12): e2004470, 2017 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-29281623
12.
Rapid enzymatic synthesis of long RNA polymers: A simple protocol to generate RNA libraries with random sequences.
Methods
; 161: 83-90, 2019 05 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30926532
13.
Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries.
Nucleic Acids Res
; 46(12): 6271-6284, 2018 07 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29788485
14.
String method solution of the gating pathways for a pentameric ligand-gated ion channel.
Proc Natl Acad Sci U S A
; 114(21): E4158-E4167, 2017 05 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-28487483
15.
Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair.
EMBO J
; 34(8): 1126-42, 2015 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25762590
16.
An updated structural classification of replicative DNA polymerases.
Biochem Soc Trans
; 47(1): 239-249, 2019 02 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-30647142
17.
Statistical Physics Approach to the Optimal Transport Problem.
Phys Rev Lett
; 123(4): 040603, 2019 Jul 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-31491256
18.
Meet-U: Educating through research immersion.
PLoS Comput Biol
; 14(3): e1005992, 2018 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-29543809
19.
Barbiturates Bind in the GLIC Ion Channel Pore and Cause Inhibition by Stabilizing a Closed State.
J Biol Chem
; 292(5): 1550-1558, 2017 02 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-27986812
20.
Allosteric and hyperekplexic mutant phenotypes investigated on an α1 glycine receptor transmembrane structure.
Proc Natl Acad Sci U S A
; 112(9): 2865-70, 2015 Mar 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-25730860