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1.
Environ Res ; 232: 116315, 2023 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-37276976

RESUMO

With the increased global interest in sequestering carbon in soil, it is necessary to understand the composition of different pools of soil organic matter (SOM) that cycle over suitably short timeframes. To explore in detail the chemical composition of agroecologically relevant yet distinct fractions of SOM, the light fraction of SOM (LFOM), the 53-µm particulate organic matter (POM), and the mobile humic acid (MHA) fractions were sequentially extracted from agricultural soils and characterized using both 13C cross polarization magic angle spinning nuclear magnetic resonance (CPMAS NMR) spectroscopy and also Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). The NMR results showed a decrease in the O-alkyl C region assigned to carbohydrates (51-110 ppm) and an increase in the aromatic region (111-161 ppm) proceeding from the LFOM to the POM and then to the MHA fraction. Similarly, based on the thousands of molecular formulae assigned to the peaks detected by FT-ICR-MS, condensed hydrocarbons were dominant only in the MHA, while aliphatic formulae were abundant in the POM and LFOM fractions. The molecular formulae of the LFOM and POM were mainly grouped in the high H/C lipid-like and aliphatic space, whereas a portion of the MHA compounds showed an extremely high (17-33, average of 25) double bond equivalent (DBE) values, corresponding to low H/C values of 0.3-0.6, representative of condensed hydrocarbons. The labile components appeared most pronounced in the POM (93% of formulae have H/C ≥ 1.5) similar to the LFOM (89% of formulae have H/C ≥ 1.5) but in contrast to the MHA (74% of formulae have H/C ≥ 1.5). The presence of both labile and recalcitrant components in the MHA fraction suggests that the stability and persistence of soil organic matter is influenced by a complex interaction of physical, chemical, and biological factors in soil. Understanding the composition and distribution of different SOM fractions can provide valuable insights into the processes that govern carbon cycling in soils, which can help inform strategies for sustainable land management and climate change mitigation.


Assuntos
Substâncias Húmicas , Solo , Solo/química , Substâncias Húmicas/análise , Agricultura , Carbono , Espectrometria de Massas , Material Particulado/análise
2.
J Chem Ecol ; 48(2): 219-239, 2022 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-34988771

RESUMO

For the characterization of BOA-OH insensitive plants, we studied the time-dependent effects of the benzoxazolinone-4/5/6/7-OH isomers on maize roots. Exposure of Zea mays seedlings to 0.5 mM BOA-OH elicits root zone-specific reactions by the formation of dark rings and spots in the zone of lateral roots, high catalase activity on root hairs, and no visible defense reaction at the root tip. We studied BOA-6-OH- short-term effects on membrane lipids and fatty acids in maize root tips in comparison to the benzoxazinone-free species Abutilon theophrasti Medik. Decreased contents of phosphatidylinositol in A. theophrasti and phosphatidylcholine in maize were found after 10-30 min. In the youngest tissue, α-linoleic acid (18:2), decreased considerably in both species and recovered within one hr. Disturbances in membrane phospholipid contents were balanced in both species within 30-60 min. Triacylglycerols (TAGs) were also affected, but levels of maize diacylglycerols (DAGs) were almost unchanged, suggesting a release of fatty acids for membrane lipid regeneration from TAGs while resulting DAGs are buildings blocks for phospholipid reconstitution, concomitant with BOA-6-OH glucosylation. Expression of superoxide dismutase (SOD2) and of ER-bound oleoyl desaturase (FAD2-2) genes were contemporaneously up regulated in contrast to the catalase CAT1, while CAT3 was arguably involved at a later stage of the detoxification process. Immuno-responses were not elicited in short-terms, since the expression of NPR1, POX12 were barely affected, PR4 after 6 h with BOA-4/7-OH and PR1 after 24 h with BOA-5/6-OH. The rapid membrane recovery, reactive oxygen species, and allelochemical detoxification may be characteristic for BOA-OH insensitive plants.


Assuntos
Meristema , Raízes de Plantas , Benzoxazóis/química , Benzoxazóis/metabolismo , Benzoxazóis/farmacologia , Expressão Gênica , Lipídeos de Membrana/metabolismo , Lipídeos de Membrana/farmacologia , Meristema/metabolismo , Raízes de Plantas/genética , Raízes de Plantas/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Zea mays/genética , Zea mays/metabolismo
3.
Anal Bioanal Chem ; 411(6): 1253-1260, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30617405

RESUMO

Phosphorus (P) research still lacks techniques for rapid imaging of P use and allocation in different soil, sediment, and biological systems in a quantitative manner. In this study, we describe a time-saving and cost-efficient digital autoradiographic method for in situ quantitative imaging of 33P radioisotopes in plant materials. Our method combines autoradiography of the radiotracer applications with additions of commercially available 14C polymer references to obtain 33P activities in a quantitative manner up to 2000 Bq cm-2. Our data show that linear standard regressions for both radioisotopes are obtained, allowing the establishment of photostimulated luminescence equivalence between both radioisotopes with a factor of 9.73. Validating experiments revealed a good agreement between the calculated and applied 33P activity (R2 = 0.96). This finding was also valid for the co-exposure of 14C polymer references and 33P radioisotope specific activities in excised plant leaves for both maize (R2 = 0.99) and wheat (R2 = 0.99). The outlined autoradiographic quantification procedure retrieved 100% ± 12% of the 33P activity in the plant leaves, irrespective of plant tissue density. The simplicity of this methodology opens up new perspectives for fast quantitative imaging of 33P in biological systems and likely, thus, also for other environmental compartments.


Assuntos
Ácidos Fosfóricos/análise , Radioisótopos de Fósforo/análise , Folhas de Planta/química , Triticum/química , Zea mays/química , Autorradiografia/métodos , Radioisótopos de Carbono/análise , Fósforo/análise , Polímeros/análise
4.
Appl Microbiol Biotechnol ; 102(3): 1229-1239, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29264775

RESUMO

Rhamnolipids are biosurfactants consisting of rhamnose (Rha) molecules linked through a ß-glycosidic bond to 3-hydroxyfatty acids with various chain lengths, and they have an enormous potential for various industrial applications. The best known native rhamnolipid producer is the human pathogen Pseudomonas aeruginosa, which produces short-chain rhamnolipids mainly consisting of a Rha-Rha-C10-C10 congener. Bacteria from the genus Burkholderia are also able to produce rhamnolipids, which are characterized by their long-chain 3-hydroxyfatty acids with a predominant Rha-Rha-C14-C14 congener. These long-chain rhamnolipids offer different physicochemical properties compared to their counterparts from P. aeruginosa making them very interesting to establish novel potential applications. However, widespread applications of rhamnolipids are still hampered by the pathogenicity of producer strains and-even more important-by the complexity of regulatory networks controlling rhamnolipid production, e.g., the so-called quorum sensing system. To overcome encountered challenges of the wild type, the responsible genes for rhamnolipid biosynthesis in Burkholderia glumae were heterologously expressed in the non-pathogenic Pseudomonas putida KT2440. Our results show that long-chain rhamnolipids from Burkholderia spec. can be produced in P. putida. Surprisingly, the heterologous expression of the genes rhlA and rhlB encoding an acyl- and a rhamnosyltransferase, respectively, resulted in the synthesis of two different mono-rhamnolipid species containing one or two 3-hydroxyfatty acid chains in equal amounts. Furthermore, mixed biosynthetic rhlAB operons with combined genes from different organisms were created to determine whether RhlA or RhlB is responsible to define the fatty acid chain lengths in rhamnolipids.


Assuntos
Burkholderia/química , Glicolipídeos/biossíntese , Pseudomonas putida/metabolismo , Proteínas de Bactérias/genética , Vias Biossintéticas , Óperon , Pseudomonas putida/genética , Percepção de Quorum , Tensoativos/metabolismo
5.
Appl Microbiol Biotechnol ; 101(7): 2865-2878, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-27988798

RESUMO

The human pathogenic bacterium Pseudomonas aeruginosa produces rhamnolipids, glycolipids with functions for bacterial motility, biofilm formation, and uptake of hydrophobic substrates. Rhamnolipids represent a chemically heterogeneous group of secondary metabolites composed of one or two rhamnose molecules linked to one or mostly two 3-hydroxyfatty acids of various chain lengths. The biosynthetic pathway involves rhamnosyltransferase I encoded by the rhlAB operon, which synthesizes 3-(3-hydroxyalkanoyloxy)alkanoic acids (HAAs) followed by their coupling to one rhamnose moiety. The resulting mono-rhamnolipids are converted to di-rhamnolipids in a third reaction catalyzed by the rhamnosyltransferase II RhlC. However, the mechanism behind the biosynthesis of rhamnolipids containing only a single fatty acid is still unknown. To understand the role of proteins involved in rhamnolipid biosynthesis the heterologous expression of rhl-genes in non-pathogenic Pseudomonas putida KT2440 strains was used in this study to circumvent the complex quorum sensing regulation in P. aeruginosa. Our results reveal that RhlA and RhlB are independently involved in rhamnolipid biosynthesis and not in the form of a RhlAB heterodimer complex as it has been previously postulated. Furthermore, we demonstrate that mono-rhamnolipids provided extracellularly as well as HAAs as their precursors are generally taken up into the cell and are subsequently converted to di-rhamnolipids by P. putida and the native host P. aeruginosa. Finally, our results throw light on the biosynthesis of rhamnolipids containing one fatty acid, which occurs by hydrolyzation of typical rhamnolipids containing two fatty acids, valuable for the production of designer rhamnolipids with desired physicochemical properties.


Assuntos
Vias Biossintéticas/genética , Ácidos Graxos/metabolismo , Glicolipídeos/biossíntese , Glicolipídeos/metabolismo , Pseudomonas putida/genética , Pseudomonas putida/metabolismo , Proteínas de Bactérias/genética , Cromatografia Líquida de Alta Pressão , Decanoatos/metabolismo , Glicolipídeos/química , Glicolipídeos/isolamento & purificação , Mutação , Óperon , Pseudomonas aeruginosa/genética , Percepção de Quorum , Ramnose/análogos & derivados , Ramnose/metabolismo , Tensoativos
6.
Biodegradation ; 26(2): 139-50, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25715827

RESUMO

Recently we showed that during the degradation of sulfadiazine (SDZ) by Microbacterium lacus strain SDZm4 the principal metabolite 2-aminopyrimidine (2-AP) accumulated to the same molar amount in the culture as SDZ disappeared (Tappe et al. Appl Environ Microbiol 79:2572-2577, 2013). Although 2-AP is considered a recalcitrant agent, long-term lysimeter experiments with (14)C-pyrimidine labeled SDZ ([(14)C]pyrSDZ) provided indications for substantial degradation of the pyrimidine moiety of the SDZ molecule. Therefore, we aimed to enrich 2-AP degrading bacteria and isolated a pure culture of a Terrabacter-like bacterium, denoted strain 2APm3. When provided with (14)C-labeled SDZ, M. lacus strain SDZm4 degraded [(14)C]pyrSDZ to [(14)C]2-AP. Resting cells of 2APm3 at a concentration of 5 × 10(6) cells ml(-1) degraded 62 µM [(14)C]2-AP to below the detection limit (0.6 µM) within 5 days. Disappearance of 2-AP resulted in the production of at least two transformation products (M1 and M2) with M2 being identified as 2-amino-4-hydroxypyrimidine. After 36 days, the transformation products disappeared and 83 % of the applied [(14)C]2-AP radioactivity was trapped as (14)CO2. From this we conclude that a consortium of two species should be able to almost completely degrade SDZ in soils.


Assuntos
Genes Bacterianos , Micrococcaceae/metabolismo , Pirimidinas/metabolismo , RNA Ribossômico 16S/genética , Poluentes do Solo/metabolismo , Sulfadiazina/metabolismo , Biodegradação Ambiental , Dióxido de Carbono/metabolismo , Radioisótopos de Carbono , Cromatografia Gasosa-Espectrometria de Massas , Humanos , Filogenia
7.
J Chem Ecol ; 40(11-12): 1286-98, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25432667

RESUMO

Abutilon theophrasti Medik., previously found to be rather insensitive to benzoxazinoid containing rye mulch and the allelochemical benzoxazolin-2(3H)-one (BOA), can be associated with the zygomycete Actinomucor elegans, whereby the fungus colonizes the root relatively superficially and mainly in the maturation zone. The fungus mitigates necrosis of the cotyledons when seedlings are incubated with 2 mM BOA, in contrast to those that lack the fungus. In liquid cultures of the fungus, tryptophan was identified. The accumulation of tryptophan is increased in presence of BOA. This amino acid seems to be important in protecting Abutilon against BOA and its derivatives since it suppressed the accumulation of BOA derived, highly toxic 2-aminophen-oxazin-3-one (APO) in the medium and on the root surface during BOA incubations of Abutilon seedlings. Although A. elegans is insensitive to BOA and APO, the fungus is not able to protect the plant against harmful effects of APO, when seedlings are treated with the compound. Abutilon can detoxify BOA via BOA-6-OH glucosylation probably by a cell wall associated glucosyltransferase, but only low amounts of the product accumulate. Low tryptophan concentrations can contribute to a degradation of the toxic intermediate BOA-6-OH by Fenton reactions, whereby the amino acid is oxidized. One of the oxidation products was identified as 4(1H)-quinolinone, which is the core substructure of the quorum sensing molecule 2-heptyl-3-hydroxy-4-quinolone. The mutualistic association of Abutilon theophrasti with Actinomucor elegans is considered as opportunistic and facultative. Such plant-fungus associations depend rather likely on environmental conditions, such as the mode of fertilization.


Assuntos
Benzoxazóis/metabolismo , Malvaceae/metabolismo , Malvaceae/microbiologia , Mucorales/fisiologia , Feromônios/metabolismo , Malvaceae/genética , Dados de Sequência Molecular , Raízes de Plantas/metabolismo , Raízes de Plantas/microbiologia , Análise de Sequência de DNA
8.
J Environ Qual ; 43(4): 1450-9, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-25603092

RESUMO

Atrazine (2-chloro-4-ethylamino-6-isopropylamino-1,3,5-triazine) groundwater monitoring in the Zwischenscholle aquifer in western Germany revealed concentrations exceeding the threshold value of 0.1 µg L and increasing concentration trends even 20 yr after its ban. Accordingly, the hypothesis was raised that a continued release of bound atrazine residues from the soil into the Zwischenscholle aquifer in combination with the low atrazine degradation in groundwater contributes to elevated atrazine in groundwater. Three soil cores reaching down to the groundwater table were taken from an agricultural field where atrazine had been applied before its ban in 1991. Atrazine residues were extracted from eight soil layers down to 300 cm using accelerated solvent extraction and analyzed using liquid chromatography-tandem mass spectrometry. Extracted atrazine concentrations ranged between 0.2 and 0.01 µg kg for topsoil and subsoil, respectively. The extracted mass from the soil profiles represented 0.07% of the applied mass, with 0.01% remaining in the top layer. A complete and instantaneous remobilization of atrazine residues and vertical mixing with the groundwater body below would lead to atrazine groundwater concentrations of 0.068 µg L. Considering the area where atrazine was applied in the region and assuming instantaneous lateral mixing in the Zwischenscholle aquifer would result in a mean groundwater concentration of 0.002 µg L. A conservative estimation suggests an atrazine half-life value of about 2 yr for the soil zone, which significantly exceeds highest atrazine half-lives found in the literature (433 d for subsurface soils). The long-term environmental behavior of atrazine and its metabolites thus needs to be reconsidered.

9.
Appl Environ Microbiol ; 79(8): 2572-7, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23396336

RESUMO

Sulfadiazine (SDZ)-degrading bacterial cultures were enriched from the topsoil layer of lysimeters that were formerly treated with manure from pigs medicated with (14)C-labeled SDZ. The loss of about 35% of the applied radioactivity after an incubation period of 3 years was attributed to CO2 release due to mineralization processes in the lysimeters. Microcosm experiments with moist soil and soil slurries originating from these lysimeters confirmed the presumed mineralization potential, and an SDZ-degrading bacterium was isolated. It was identified as Microbacterium lacus, denoted strain SDZm4. During degradation studies with M. lacus strain SDZm4 using pyrimidine-ring labeled SDZ, SDZ disappeared completely but no (14)CO2 was released during 10 days of incubation. The entire applied radioactivity (AR) remained in solution and could be assigned to 2-aminopyrimidine. In contrast, for parallel incubations but with phenyl ring-labeled SDZ, 56% of the AR was released as (14)CO2, 16% was linked to biomass, and 21% remained as dissolved, not yet identified (14)C. Thus, it was shown that M. lacus extensively mineralized and partly assimilated the phenyl moiety of the SDZ molecule while forming equimolar amounts of 2-aminopyrimidine. This partial degradation might be an important step in the complete mineralization of SDZ by soil microorganisms.


Assuntos
Mycobacterium/metabolismo , Sulfadiazina/metabolismo , Animais , Técnicas de Tipagem Bacteriana , Radioisótopos de Carbono , Esterco/microbiologia , Dados de Sequência Molecular , Mycobacterium/genética , Mycobacterium/isolamento & purificação , Pirimidinas , Microbiologia do Solo , Sulfadiazina/química , Sulfadiazina/uso terapêutico , Suínos
10.
Plants (Basel) ; 12(15)2023 Jul 29.
Artigo em Inglês | MEDLINE | ID: mdl-37570969

RESUMO

Toxic breakdown products of young Camelina sativa (L.) Crantz, glucosinolates can eliminate microorganisms in the soil. Since microorganisms are essential for phosphate cycling, only insensitive microorganisms with phosphate-solubilizing activity can improve C. sativa's phosphate supply. In this study, 33P-labeled phosphate, inductively coupled plasma mass spectrometry and pot experiments unveiled that not only Trichoderma viride and Pseudomonas laurentiana used as phosphate-solubilizing inoculants, but also intrinsic soil microorganisms, including Penicillium aurantiogriseum, and the assemblies of root-colonizing microorganisms solubilized as well phosphate from apatite, trigger off competitive behavior between the organisms. Driving factors in the competitiveness are plant and microbial secondary metabolites, while glucosinolates of Camelina and their breakdown products are regarded as key compounds that inhibit the pathogen P. aurantiogriseum, but also seem to impede root colonization of T. viride. On the other hand, fungal diketopiperazine combined with glucosinolates is fatal to Camelina. The results may contribute to explain the contradictory effects of phosphate-solubilizing microorganisms when used as biofertilizers. Further studies will elucidate impacts of released secondary metabolites on coexisting microorganisms and plants under different environmental conditions.

11.
Plant Physiol ; 152(4): 2188-99, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20118270

RESUMO

Carotenoid turnover was investigated in mature leaves of Arabidopsis (Arabidopsis thaliana) by 14CO2 pulse-chase labeling under control-light (CL; 130 micromol photons m(-2) s(-1)) and high-light (HL; 1,000 micromol photons m(-2) s(-1)) conditions. Following a 30-min 14CO2 administration, photosynthetically fixed 14C was quickly incorporated in beta-carotene (beta-C) and chlorophyll a (Chl a) in all samples during a chase of up to 10 h. In contrast, 14C was not detected in Chl b and xanthophylls, even when steady-state amounts of the xanthophyll-cycle pigments and lutein increased markedly, presumably by de novo synthesis, in CL-grown plants under HL. Different light conditions during the chase did not affect the 14C fractions incorporated in beta-C and Chl a, whereas long-term HL acclimation significantly enhanced 14C labeling of Chl a but not beta-C. Consequently, the maximal 14C signal ratio between beta-C and Chl a was much lower in HL-grown plants (1:10) than in CL-grown plants (1:4). In lut5 mutants, containing alpha-carotene (alpha-C) together with reduced amounts of beta-C, remarkably high 14C labeling was found for alpha-C while the labeling efficiency of Chl a was similar to that of wild-type plants. The maximum 14C ratios between carotenes and Chl a were 1:2 for alpha-C:Chl a and 1:5 for beta-C:Chl a in CL-grown lut5 plants, suggesting high turnover of alpha-C. The data demonstrate continuous synthesis and degradation of carotenes and Chl a in photosynthesizing leaves and indicate distinct acclimatory responses of their turnover to changing irradiance. In addition, the results are discussed in the context of photosystem II repair cycle and D1 protein turnover.


Assuntos
Arabidopsis/metabolismo , Radioisótopos de Carbono/metabolismo , Carotenoides/metabolismo , Clorofila/metabolismo , Folhas de Planta/metabolismo , Clorofila A
12.
Sci Rep ; 11(1): 20627, 2021 10 18.
Artigo em Inglês | MEDLINE | ID: mdl-34663887

RESUMO

Cnidarians are characterized by the possession of stinging organelles, called nematocysts, which they use for prey capture and defense. Nematocyst discharge is controlled by a mechanosensory apparatus with analogies to vertebrate hair cells. Members of the transient receptor potential (TRPN) ion channel family are supposed to be involved in the transduction of the mechanical stimulus. A small molecule screen was performed to identify compounds that affect nematocyst discharge in Hydra. We identified several [2.2]paracyclophanes that cause inhibition of nematocyst discharge in the low micro-molar range. Further structure-activity analyses within the compound class of [2.2]paracyclophanes showed common features that are required for the inhibitory activity of the [2.2]paracyclophane core motif. This study demonstrates that Hydra can serve as a model for small molecule screens targeting the mechanosensory apparatus in native tissues.


Assuntos
Hydra/imunologia , Nematocisto/efeitos dos fármacos , Nematocisto/fisiologia , Animais , Fenômenos Biomecânicos/efeitos dos fármacos , Fenômenos Biomecânicos/fisiologia , Cnidários , Hydra/metabolismo , Bibliotecas de Moléculas Pequenas/farmacologia , Canais de Potencial de Receptor Transitório/efeitos dos fármacos , Canais de Potencial de Receptor Transitório/fisiologia
13.
Anal Bioanal Chem ; 398(7-8): 2803-11, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20803196

RESUMO

Redox cofactors like NADH and NADPH are essential for the catalytic activity of several oxidoreductases. Here, we describe a comparative study of the thermal degradation products of both cofactors in the dry and liquid states. The degradation products were first separated, detected, and quantified by high-performance liquid chromatography (HPLC). Subsequently, selected main fractions were investigated by nanoelectrospray ionization-Fourier transform ion cyclotron resonance mass spectrometry (MS). Additionally, HPLC-MS was used to elucidate the structure of all degradation products. From these data, degradation pathways for both the liquid and the solid states were elucidated. Thermal degradation in water is significantly faster compared to degradation in the solid state. Hydrolysis and oxidative ring opening of the reduced nicotinamide adenine dinucleotide (phosphate) were shown to be the main reaction paths. Surprisingly, no significant differences were observed between the degradation of both cofactors in solution and in the solid state. Our results demonstrate that the stability of both cofactors is not limiting at moderate temperatures if they are used in the dry state (e.g., solid/gas catalysis). Significant degradation of dry cofactors was only observed under conditions, which are usually not appropriate for biocatalysis (>95 °C). Besides, the situation is completely different in solution where degradation is already observed at moderate temperatures.


Assuntos
Cromatografia Líquida de Alta Pressão/métodos , NADP/química , NAD/química , Espectrometria de Massas por Ionização por Electrospray/métodos , Análise de Fourier , Temperatura Alta
14.
Sci Rep ; 10(1): 17140, 2020 10 13.
Artigo em Inglês | MEDLINE | ID: mdl-33051570

RESUMO

Information on the bioavailability and -accessibility of subsoil phosphorus (P) and how soil moisture affects its utilization by plants is scarce. The current study examined whether and to which degree wheat acquires P from subsoil allocated hydroxyapatite and how this could be affected by soil moisture. We investigated the 33P uptake by growing wheat in two rhizotron trials (soil and sand) with integrated 33P-labelled hydroxyapatite hotspots over a period of 44 days using digital autoradiography imaging and liquid scintillation counting. We applied two irrigation scenarios, mimicking either rainfall via topsoil watering or subsoil water storage. The plants showed similar biomass development when grown in soil, but a reduced growth in sand rhizotrons. Total plant P(tot) stocks were significantly larger in plants grown under improved subsoil moisture supply, further evidenced by enhanced P stocks in the ears of wheat in the sand treatment due to an earlier grain filling. This P uptake is accompanied by larger 33P signals, indicating that the plants accessed the hydroxyapatite because subsoil irrigation also promoted root proliferation within and around the hotspots. We conclude that even within a single season plants access subsoil mineral P sources, and this process is influenced by water management.

15.
Methods Mol Biol ; 2030: 403-414, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31347134

RESUMO

In this chapter we describe a method for quantification of 20 proteinogenic amino acids by liquid chromatography-mass spectrometry which affords neither derivatization nor the use of organic solvents. Analysis of the underivatized amino acids is performed by liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) in the positive ESI mode. Separation is achieved on a strong cation exchange (SCX) column (Luna 5 µ SCX 100 Å) with 5% acetic acid in water (A) and 75 mM ammonium acetate in water (B). Quantification is accomplished by use of d2-phenylalanine as internal standard achieving limits of detection of 5-50 nM. The method was successfully applied for the determination of proteinogenic amino acids in plant extracts.


Assuntos
Aminoácidos/análise , Extratos Vegetais/agonistas , Espectrometria de Massas por Ionização por Electrospray/métodos , Espectrometria de Massas em Tandem/métodos , Aminoácidos/química , Cromatografia Líquida de Alta Pressão/instrumentação , Cromatografia Líquida de Alta Pressão/métodos , Limite de Detecção , Reprodutibilidade dos Testes , Solventes/química , Espectrometria de Massas por Ionização por Electrospray/instrumentação , Espectrometria de Massas em Tandem/instrumentação
16.
Anal Bioanal Chem ; 391(1): 161-9, 2008 May.
Artigo em Inglês | MEDLINE | ID: mdl-18301882

RESUMO

An all-glass miniaturized light-phase rotary perforator for the enrichment of polar compounds has been modified/miniaturized and applied. Its application is demonstrated here for the analysis of nitrophenols and dinitrophenols from low-concentration/low-volume samples. For the method development of high-performance liquid chromatography-mass spectrometry (MS) four eluents were tested: (1) water-methanol, (2) acetic acid-methanol, (3) trifluoroacetic acid-methanol and (4) water-acetonitrile. The last eluent mentioned was used for the subsequent investigation of samples from field experiments. Detection limits varied between 1 ng and 50 pg. The relative standard deviation in repeated measurements was below 15%, corresponding to a good reproducibility. Recoveries ranged between 31 and 100%, showing a significant dependence on the extraction time and the final volume of the sample after evaporation. Quantification was carried out by using deuterated 4-nitrophenol and 2,4-dinitrophenol as standards and applying previously determined response factors. Structure determination of further substances under atmospheric pressure chemical ionization was performed by a first screening with a source collision-induced dissociation, followed by the definite analysis by MS( n ). The first results are shown for cloud water, fog water and rainwater samples from different locations.

17.
Anal Bioanal Chem ; 391(7): 2663-72, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18506428

RESUMO

A method has been developed for quantification of 20 amino acids as well as 13 (15)N-labeled amino acids in barley plants. The amino acids were extracted from plant tissues using aqueous HCl-ethanol and directly analyzed without further purification. Analysis of the underivatized amino acids was performed by liquid chromatography (LC)-electrospray ionization (ESI) tandem mass spectrometry (MS-MS) in the positive ESI mode. Separation was achieved on a strong cation exchange column (Luna 5micro SCX 100A) with 30 mM ammonium acetate in water (solvent A) and 5% acetic acid in water (solvent B). Quantification was accomplished using d (2)-Phe as an internal standard. Calibration curves were linear over the range 0.5-50 microM, and limits of detection were estimated to be 0.1-3.0 microM. The mass-spectrometric technique was employed to study the regulation of amino acid levels in barley plants grown at 15 degrees C uniform root temperature (RT) and 20-10 degrees C vertical RT gradient (RTG). The LC-MS-MS results demonstrated enhanced concentration of free amino acids in shoots at 20-10 degrees C RTG, while total free amino acid concentration in roots was similarly low for both RT treatments. (15)NO(3) (-) labeling experiments showed lower (15)N/(14)N ratios for Glu, Ser, Ala and Val in plants grown at 20-10 degrees C RTG compared with those grown at 15 degrees C RT.


Assuntos
Aminoácidos/análise , Cromatografia por Troca Iônica/métodos , Hordeum/química , Espectrometria de Massas em Tandem/métodos , Calibragem , Cátions/química , Hordeum/metabolismo , Isótopos de Nitrogênio , Extratos Vegetais/análise , Folhas de Planta/química , Folhas de Planta/metabolismo , Raízes de Plantas/química , Raízes de Plantas/metabolismo , Brotos de Planta/química , Brotos de Planta/metabolismo , Reprodutibilidade dos Testes , Espectrometria de Massas por Ionização por Electrospray/métodos
18.
J Contam Hydrol ; 213: 62-72, 2018 06.
Artigo em Inglês | MEDLINE | ID: mdl-29789148

RESUMO

We present the results of a two years study on the contamination of the Luxembourg Sandstone aquifer by metolachlor-ESA and metolachlor-OXA, two major transformation products of s-metolachlor. The aim of the study was twofold: (i) assess whether elevated concentrations of both transformation products (up to 1000 ng/l) were due to fast flow breakthough events of short duration or the signs of a contamination of the entire aquifer and (ii) estimate the time to trend reversal once the parent compound was withdrawn from the market. These two questions were addressed by a combined use of groundwater monitoring, laboratory experiments and numerical simulations of the fate of the degradation products in the subsurface. Twelve springs were sampled weekly over an eighteen month period, and the degradation rates of both the parent compound and its transformation products were measured on a representative soil in the laboratory using a radiolabeled precursor. Modelling with the numeric code PEARL simulating pesticide fate in soil coupled to a simple transfer function model for the aquifer compartment, and calibrated from the field and laboratory data, predicts a significant damping by the aquifer of the peaks of concentration of both metolachlor-ESA and -OXA leached from the soil. The time to trend reversal following the ban of s-metolachlor in spring protection zones should be observed before the end of the decade, while the return of contaminant concentrations below the drinking water limit of 100 ng/l however is expected to last up to twelve years. The calculated contribution to total water discharge of the fast-flow component from cropland and short-circuiting the aquifer was small in most springs (median of 1.2%), but sufficient to cause additional peaks of concentration of several hundred nanograms per litre in spring water. These peaks are superimposed on the more steady contamination sustained by the base flow, and should cease immediately once application of the parent compound stops.


Assuntos
Acetamidas/análise , Acetamidas/metabolismo , Poluentes do Solo/análise , Poluentes Químicos da Água/análise , Água Potável , Água Subterrânea/análise , Herbicidas/análise , Luxemburgo , Modelos Teóricos , Nascentes Naturais , Poluentes do Solo/metabolismo , Poluentes Químicos da Água/metabolismo
19.
Commun Integr Biol ; 10(3): e1302633, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28702124

RESUMO

Pantoea ananatis is a bacterium associated with other microorganisms on Abutilon theophrasti Medik. roots. It converts 6-hydroxybenzoxazolin-2(3H)-one (BOA-6-OH), a hydroxylated derivative of the allelochemical benzoxazolin-2(3H)-one, into 6-hydroxy-5-nitrobenzo[d]oxazol-2(3H)-one. The compound was identified by NMR and mass spectrometric methods. In vitro synthesis succeeded with Pantoea protein, with isolated proteins from the Abutilon root surface or with horseradish peroxidase in the presence of nitrite and H2O2. Nitro-BOA-6-OH is completely degraded further by Pantoea ananatis and Abutilon root surface proteins. Under laboratory conditions, 6-hydroxy-5-nitrobenzo[d]oxazol-2(3H)-one inhibits Lepidium sativum seedling growth whereas Abutilon theophrasti is much less affected. Although biodegradable, an agricultural use of 6-hydroxy-5-nitrobenzo[d]oxazol-2(3H)-one is undesirable because of the high toxicity of nitro aromatic compounds to mammals.

20.
Chemosphere ; 172: 310-315, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-28086159

RESUMO

The soil-plant transfer of Cs-137 and Sr-90 in different crops was determined with respect to the present-day amendment practice of using digestate from biogas fermenters. The studies were performed using large lysimeters filled with undisturbed luvisol monoliths. In contrast to the conservative tracer, Br-, neither of the studied radionuclides showed a significant vertical translocation nor effect of the applied digestate amendment compared to a non-amended control was found. Furthermore, no significant plant uptake was measured for both nuclides in wheat or oat as indicated by the low transfer factors between soil-shoot for Cs-137 (TF 0.001-0.010) and for Sr-90 (0.10-0.51). The transfer into nutritionally relevant plant parts was even lower with transfer factors for soil-grain for Cs-137 (TF 0.000-0.001) and for Sr-90 (0.01-0.06). Hence, the amendment with biogas digestate is unfortunately not an option to further reduce plant uptake of these radionuclides in agricultural crops, but it does not increase plant uptake either.


Assuntos
Radioisótopos de Césio/química , Radioisótopos de Césio/metabolismo , Poluentes Radioativos do Solo/química , Poluentes Radioativos do Solo/metabolismo , Solo/química , Radioisótopos de Estrôncio/química , Radioisótopos de Estrôncio/metabolismo , Biodegradação Ambiental , Biocombustíveis , Transporte Biológico , Radioisótopos de Césio/isolamento & purificação , Produtos Agrícolas/metabolismo , Poluentes Radioativos do Solo/isolamento & purificação , Radioisótopos de Estrôncio/isolamento & purificação
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