Pesquisa | Portal de Pesquisa da BVS Enfermagem

1.

Validation of a real-time PCR-based qualitative assay for the detection of methylated SEPT9 DNA in human plasma.

Potter, Nicholas T; Hurban, Patrick; White, Mary N; Whitlock, Kara D; Lofton-Day, Catherine E; Tetzner, Reimo; Koenig, Thomas; Quigley, Neil B; Weiss, Gunter.

Clin Chem ; 60(9): 1183-91, 2014 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-24938752

2.

Efficient and accurate whole genome assembly and methylome profiling of E. coli.

Powers, Jason G; Weigman, Victor J; Shu, Jenny; Pufky, John M; Cox, Donald; Hurban, Patrick.

BMC Genomics ; 14: 675, 2013 Oct 03.

Artigo em Inglês | MEDLINE | ID: mdl-24090403

3.

High-throughput toxicogenomic screening of chemicals in the environment using metabolically competent hepatic cell cultures.

Franzosa, Jill A; Bonzo, Jessica A; Jack, John; Baker, Nancy C; Kothiya, Parth; Witek, Rafal P; Hurban, Patrick; Siferd, Stephen; Hester, Susan; Shah, Imran; Ferguson, Stephen S; Houck, Keith A; Wambaugh, John F.

NPJ Syst Biol Appl ; 7(1): 7, 2021 Jan 27.

Artigo em Inglês | MEDLINE | ID: mdl-33504769

4.

A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.

Trick, Martin; Cheung, Foo; Drou, Nizar; Fraser, Fiona; Lobenhofer, Edward K; Hurban, Patrick; Magusin, Andreas; Town, Christopher D; Bancroft, Ian.

BMC Plant Biol ; 9: 50, 2009 May 08.

Artigo em Inglês | MEDLINE | ID: mdl-19426481

5.

Rat toxicogenomic study reveals analytical consistency across microarray platforms.

Guo, Lei; Lobenhofer, Edward K; Wang, Charles; Shippy, Richard; Harris, Stephen C; Zhang, Lu; Mei, Nan; Chen, Tao; Herman, Damir; Goodsaid, Federico M; Hurban, Patrick; Phillips, Kenneth L; Xu, Jun; Deng, Xutao; Sun, Yongming Andrew; Tong, Weida; Dragan, Yvonne P; Shi, Leming.

Nat Biotechnol ; 24(9): 1162-9, 2006 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-17061323

6.

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.

Patterson, Tucker A; Lobenhofer, Edward K; Fulmer-Smentek, Stephanie B; Collins, Patrick J; Chu, Tzu-Ming; Bao, Wenjun; Fang, Hong; Kawasaki, Ernest S; Hager, Janet; Tikhonova, Irina R; Walker, Stephen J; Zhang, Liang; Hurban, Patrick; de Longueville, Francoise; Fuscoe, James C; Tong, Weida; Shi, Leming; Wolfinger, Russell D.

Nat Biotechnol ; 24(9): 1140-50, 2006 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-16964228

7.

Design, Optimization, and Multisite Evaluation of a Targeted Next-Generation Sequencing Assay System for Chimeric RNAs from Gene Fusions and Exon-Skipping Events in Non-Small Cell Lung Cancer.

Blidner, Richard A; Haynes, Brian C; Hyter, Stephen; Schmitt, Sarah; Pessetto, Ziyan Y; Godwin, Andrew K; Su, Dan; Hurban, Patrick; van Kempen, Léon C; Aguirre, Maria L; Gokul, Shobha; Cardwell, Robyn D; Latham, Gary J.

J Mol Diagn ; 21(2): 352-365, 2019 03.

Artigo em Inglês | MEDLINE | ID: mdl-30529127

8.

Multicenter study of acetaminophen hepatotoxicity reveals the importance of biological endpoints in genomic analyses.

Beyer, Richard P; Fry, Rebecca C; Lasarev, Michael R; McConnachie, Lisa A; Meira, Lisiane B; Palmer, Valerie S; Powell, Christine L; Ross, Pamela K; Bammler, Theo K; Bradford, Blair U; Cranson, Alex B; Cunningham, Michael L; Fannin, Rickie D; Higgins, Gregory M; Hurban, Patrick; Kayton, Robert J; Kerr, Kathleen F; Kosyk, Oksana; Lobenhofer, Edward K; Sieber, Stella O; Vliet, Portia A; Weis, Brenda K; Wolfinger, Russel; Woods, Courtney G; Freedman, Jonathan H; Linney, Elwood; Kaufmann, William K; Kavanagh, Terrance J; Paules, Richard S; Rusyn, Ivan; Samson, Leona D; Spencer, Peter S; Suk, William; Tennant, Raymond J; Zarbl, Helmut.

Toxicol Sci ; 99(1): 326-37, 2007 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-17562736

9.

Profiles of global gene expression in ionizing-radiation-damaged human diploid fibroblasts reveal synchronization behind the G1 checkpoint in a G0-like state of quiescence.

Zhou, Tong; Chou, Jeff W; Simpson, Dennis A; Zhou, Yingchun; Mullen, Thomas E; Medeiros, Margarida; Bushel, Pierre R; Paules, Richard S; Yang, Xuebin; Hurban, Patrick; Lobenhofer, Edward K; Kaufmann, William K.

Environ Health Perspect ; 114(4): 553-9, 2006 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-16581545

10.

Toward an integrative systems toxicology.

Hurban, Patrick.

Pharmacogenomics ; 5(8): 1163-6, 2004 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-15584882

11.

Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype.

Lobenhofer, Edward K; Auman, J Todd; Blackshear, Pamela E; Boorman, Gary A; Bushel, Pierre R; Cunningham, Michael L; Fostel, Jennifer M; Gerrish, Kevin; Heinloth, Alexandra N; Irwin, Richard D; Malarkey, David E; Merrick, B Alex; Sieber, Stella O; Tucker, Charles J; Ward, Sandra M; Wilson, Ralph E; Hurban, Patrick; Tennant, Raymond W; Paules, Richard S.

Genome Biol ; 9(6): R100, 2008.

Artigo em Inglês | MEDLINE | ID: mdl-18570634

12.

Identification of primary transcriptional regulation of cell cycle-regulated genes upon DNA damage.

Zhou, Tong; Chou, Jeff; Mullen, Thomas E; Elkon, Rani; Zhou, Yingchun; Simpson, Dennis A; Bushel, Pierre R; Paules, Richard S; Lobenhofer, Edward K; Hurban, Patrick; Kaufmann, William K.

Cell Cycle ; 6(8): 972-81, 2007 Apr 15.

Artigo em Inglês | MEDLINE | ID: mdl-17404513

13.

Application of visualization tools to the analysis of histopathological data enhances biological insight and interpretation.

Lobenhofer, Edward K; Boorman, Gary A; Phillips, Kenneth L; Heinloth, Alexandra N; Malarkey, David E; Blackshear, Pamela E; Houle, Christopher; Hurban, Patrick.

Toxicol Pathol ; 34(7): 921-8, 2006.

Artigo em Inglês | MEDLINE | ID: mdl-17178692

14.

Variation in the hepatic gene expression in individual male Fischer rats.

Boorman, Gary A; Irwin, Richard D; Vallant, Molly K; Gerken, Diane K; Lobenhofer, Edward K; Hejtmancik, Milton R; Hurban, Patrick; Brys, April M; Travlos, Greg S; Parker, Joel S; Portier, Christopher J.

Toxicol Pathol ; 33(1): 102-10, 2005.

Artigo em Inglês | MEDLINE | ID: mdl-15805061

15.

Standardizing global gene expression analysis between laboratories and across platforms.

Bammler, Theodore; Beyer, Richard P; Bhattacharya, Sanchita; Boorman, Gary A; Boyles, Abee; Bradford, Blair U; Bumgarner, Roger E; Bushel, Pierre R; Chaturvedi, Kabir; Choi, Dongseok; Cunningham, Michael L; Deng, Shibing; Dressman, Holly K; Fannin, Rickie D; Farin, Fredrico M; Freedman, Jonathan H; Fry, Rebecca C; Harper, Angel; Humble, Michael C; Hurban, Patrick; Kavanagh, Terrance J; Kaufmann, William K; Kerr, Kathleen F; Jing, Li; Lapidus, Jodi A; Lasarev, Michael R; Li, Jianying; Li, Yi-Ju; Lobenhofer, Edward K; Lu, Xinfang; Malek, Renae L; Milton, Sean; Nagalla, Srinivasa R; O'malley, Jean P; Palmer, Valerie S; Pattee, Patrick; Paules, Richard S; Perou, Charles M; Phillips, Ken; Qin, Li-Xuan; Qiu, Yang; Quigley, Sean D; Rodland, Matthew; Rusyn, Ivan; Samson, Leona D; Schwartz, David A; Shi, Yan; Shin, Jung-Lim; Sieber, Stella O; Slifer, Susan.

Nat Methods ; 2(5): 351-6, 2005 May.

Artigo em Inglês | MEDLINE | ID: mdl-15846362

16.

The auxin-induced transcriptome for etiolated Arabidopsis seedlings using a structure/function approach.

Pufky, John; Qiu, Yang; Rao, Mulpuri V; Hurban, Patrick; Jones, Alan M.

Funct Integr Genomics ; 3(4): 135-43, 2003 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-14648238

17.

Microarray analyses of the metabolic responses of Saccharomyces cerevisiae to organic solvent dimethyl sulfoxide.

Zhang, Weiwen; Needham, David L; Coffin, Marie; Rooker, April; Hurban, Patrick; Tanzer, Matthew M; Shuster, Jeffrey R.

J Ind Microbiol Biotechnol ; 30(1): 57-69, 2003 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-12545388

18.

MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues.

Barad, Omer; Meiri, Eti; Avniel, Amir; Aharonov, Ranit; Barzilai, Adi; Bentwich, Isaac; Einav, Uri; Gilad, Shlomit; Hurban, Patrick; Karov, Yael; Lobenhofer, Edward K; Sharon, Eilon; Shiboleth, Yoel M; Shtutman, Marat; Bentwich, Zvi; Einat, Paz.

Genome Res ; 14(12): 2486-94, 2004 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-15574827

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