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1.
Anal Chem ; 95(21): 8332-8339, 2023 05 30.
Artigo em Inglês | MEDLINE | ID: mdl-37198732

RESUMO

Poly(dimethylsiloxane) (PDMS) is used in microfluidics owing to its biocompatibility and simple fabrication. However, its intrinsic hydrophobicity and biofouling inhibit its microfluidic applications. Conformal hydrogel-skin coating for PDMS microchannels, involving the microstamping transfer of the masking layer, is reported herein. A selective uniform hydrogel layer with a thickness of ∼1 µm was coated in diverse PDMS microchannels with a resolution of ∼3 µm, maintaining its structure and hydrophilicity after 180 days (6 months). The wettability transition of PDMS was demonstrated through the switched emulsification in a flow-focusing device (water-in-oil [pristine PDMS] to oil-in-water [hydrophilic PDMS]). A one-step bead-based immunoassay was performed to detect the anti-severe acute respiratory syndrome coronavirus 2 IgG using a hydrogel-skin-coated point-of-care platform.


Assuntos
COVID-19 , Microfluídica , Humanos , Hidrogéis , Dimetilpolisiloxanos/química , Molhabilidade , Água
2.
Nat Chem Biol ; 17(1): 104-112, 2021 01.
Artigo em Inglês | MEDLINE | ID: mdl-33139950

RESUMO

Tyrian purple, mainly composed of 6,6'-dibromoindigo (6BrIG), is an ancient dye extracted from sea snails and was recently demonstrated as a biocompatible semiconductor material. However, its synthesis remains limited due to uncharacterized biosynthetic pathways and the difficulty of regiospecific bromination. Here, we introduce an effective 6BrIG production strategy in Escherichia coli using tryptophan 6-halogenase SttH, tryptophanase TnaA and flavin-containing monooxygenase MaFMO. Since tryptophan halogenases are expressed in highly insoluble forms in E. coli, a flavin reductase (Fre) that regenerates FADH2 for the halogenase reaction was used as an N-terminal soluble tag of SttH. A consecutive two-cell reaction system was designed to overproduce regiospecifically brominated precursors of 6BrIG by spatiotemporal separation of bromination and bromotryptophan degradation. These approaches led to 315.0 mg l-1 6BrIG production from tryptophan and successful synthesis of regiospecifically dihalogenated indigos. Furthermore, it was demonstrated that 6BrIG overproducing cells can be directly used as a bacterial dye.


Assuntos
Proteínas de Escherichia coli/genética , Escherichia coli/genética , FMN Redutase/genética , Regulação Bacteriana da Expressão Gênica , Indóis/metabolismo , Oxirredutases/genética , Oxigenases/genética , Triptofano/metabolismo , Triptofanase/genética , Materiais Biocompatíveis/química , Materiais Biocompatíveis/metabolismo , Clonagem Molecular , Corantes/isolamento & purificação , Corantes/metabolismo , Escherichia coli/enzimologia , Proteínas de Escherichia coli/metabolismo , FMN Redutase/metabolismo , Flavina-Adenina Dinucleotídeo/análogos & derivados , Flavina-Adenina Dinucleotídeo/metabolismo , Expressão Gênica , Vetores Genéticos/química , Vetores Genéticos/metabolismo , Halogenação , Índigo Carmim/isolamento & purificação , Índigo Carmim/metabolismo , Indóis/isolamento & purificação , Engenharia Metabólica/métodos , Oxirredutases/metabolismo , Oxigenases/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Semicondutores , Estereoisomerismo , Triptofanase/metabolismo
3.
Biotechnol Bioeng ; 119(10): 2938-2949, 2022 10.
Artigo em Inglês | MEDLINE | ID: mdl-35876239

RESUMO

6-Bromoindirubin (6BrIR), found in Murex sea snails, is a precursor of indirubin-derivatives anticancer drugs. However, its synthesis remains limited due to uncharacterized biosynthetic pathways and difficulties in site-specific bromination and oxidation at the indole ring. Here, we present an efficient 6BrIR production strategy in Escherichia coli by using four enzymes, that is, tryptophan 6-halogenase fused with flavin reductase Fre (Fre-L3-SttH), tryptophanase (TnaA), toluene 4-monooxygenase (PmT4MO), and flavin-containing monooxygenase (MaFMO). Although most indole oxygenases preferentially oxygenate the electronically active C3 position of indole, PmT4MO was newly characterized to perform C2 oxygenation of 6-bromoindole with 45% yield to produce 6-bromo-2-oxindole. In addition, 6BrIR was selectively generated without indigo and indirubin byproducts by controlling the reducing power of cysteine and oxygen supply during the MaFMO reaction. These approaches led to 34.1 mg/L 6BrIR productions, making it possible to produce the critical precursor of the anticancer drugs only from natural ingredients such as tryptophan, NaBr, and oxygen.


Assuntos
Escherichia coli , Triptofano , Escherichia coli/metabolismo , Indóis , Oxigênio/metabolismo , Triptofano/metabolismo
4.
Metab Eng ; 66: 68-78, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-33845171

RESUMO

Acetoin is widely used in food and cosmetics industries as a taste and fragrance enhancer. To produce (R)-acetoin in Saccharomyces cerevisiae, acetoin biosynthetic genes encoding α-acetolactate synthase (AlsS) and α-acetolactate decarboxylase (AlsD) from Bacillus subtilis and water-forming NADH oxidase (NoxE) from Lactococcus lactis were integrated into delta-sequences in JHY605 strain, where the production of ethanol, glycerol, and (R,R)-2,3-butanediol (BDO) was largely eliminated. We further improved acetoin production by increasing acetoin tolerance by adaptive laboratory evolution, and eliminating other byproducts including meso-2,3-BDO and 2,3-dimethylglycerate, a newly identified byproduct. Ara1, Ypr1, and Ymr226c (named Ora1) were identified as (S)-alcohol-forming reductases, which can reduce (R)-acetoin to meso-2,3-BDO in vitro. However, only Ara1 and Ypr1 contributed to meso-2,3-BDO production in vivo. We elucidate that Ora1, having a substrate preference for (S)-acetoin, reduces (S)-α-acetolactate to 2,3-dimethylglycerate, thus competing with AlsD-mediated (R)-acetoin production. By deleting ARA1, YPR1, and ORA1, 101.3 g/L of (R)-acetoin was produced with a high yield (96% of the maximum theoretical yield) and high stereospecificity (98.2%).


Assuntos
Acetoína , Saccharomyces cerevisiae , Oxirredutases do Álcool/genética , Butileno Glicóis , NAD , Saccharomyces cerevisiae/genética
5.
Langmuir ; 37(22): 6702-6710, 2021 Jun 08.
Artigo em Inglês | MEDLINE | ID: mdl-34018742

RESUMO

Steel sandwich sheets (steel-polymer-steel), which are composed of lightweight polymers bonded on both sides with rigid steel sheets, have recently been developed as functional lightweight materials. In this study, a steel sandwich sheet (electrogalvanized (EG) steel sheet-polypropylene (PP)-EG steel sheet) with improved normal adhesion is fabricated without adhesives. Instead, adhesion is achieved via mechanical interlocking between the etched EG steel sheets and PP. Hierarchical structures were formed on the EG steel sheet surface by electrochemical etching to attain effective mechanical interlocking for improving normal adhesion without any adhesives. In the case of the EG steel sheet etched at 6 V for 7 s, a high fraction (∼35%) of holes (size: <1 µm2) with nanoscale scalloped structures was formed on the EG steel sheet surface. The normal adhesion test result of the fabricated steel sandwich sheet showed that the adhesion strength increased from virtually 0 (bare) to 559.6 kPa as a result of mechanical interlocking. The results of the focused ion beam-scanning electron microscopy and energy-dispersive spectrometry analyses confirmed the cohesive failure of PP resulting from the successful mechanical interlocking of PP with the holes formed on the etched EG steel sheet. To examine the effect of hierarchical structures on the normal adhesion of the steel sandwich sheet, finite element analysis was implemented.

6.
Chembiochem ; 21(10): 1446-1452, 2020 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-31916339

RESUMO

Tryptophan halogenases are found in diverse organisms and catalyze regiospecific halogenation. They play an important role in the biosynthesis of halogenated indole alkaloids, which are biologically active and of therapeutic importance. Here, a tryptophan 6-halogenase (SatH) from Streptomyces albus was characterized by using a whole-cell reaction system in Escherichia coli. SatH showed substrate specificity for chloride and bromide ions, leading to regiospecific halogenation at the C6-position of l-tryptophan. In addition, SatH exhibited higher performance in bromination than that of previously reported tryptophan halogenases in the whole-cell reaction system. Through structure-based protein mutagenesis, it has been revealed that two consecutive residues, A78/V79 in SatH and G77/I78 in PyrH, are key determinants in the regioselectivity difference between tryptophan 6- and 5-halogenases. Substituting the AV with GI residues switched the regioselectivity of SatH by moving the orientation of tryptophan. These data contribute to an understanding of the key residues that determine the regioselectivity of tryptophan halogenases.


Assuntos
Proteínas de Bactérias/metabolismo , Oxirredutases/metabolismo , Streptomyces/enzimologia , Triptofano/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Domínio Catalítico , Halogenação , Mutagênese Sítio-Dirigida , Mutação , Oxirredutases/química , Oxirredutases/genética , Filogenia , Homologia de Sequência , Especificidade por Substrato , Triptofano/química
7.
J Basic Microbiol ; 59(3): 249-255, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30548881

RESUMO

Tragacanth, a highly branched carbohydrate polymer isolated from Astragalus, is one of the most commonly used gums in food industry. The primary structure of tragacanth is composed of galacturonic acid monomers connected with α 1-4 links, and it is very similar to the pectin. Tragacanth degradation by microorganisms is significant in two aspects: first, food preservation and microbial growth control due to too much use of tragacanth in the food industry, second, therapeutic and pharmaceutical potential of obtained oligosaccharides. In the present study, we report three new strains of bacteria, Acinetobacter guillouiae strain TD1, Kosakonia sacchari strain TD2, and Bacillus vallismortis strain PD1 with the capability of growing in tragacanth as an only source of carbon and energy. The evolutionary history of the isolated strains was analyzed based on 16S rRNA gene sequences in MEGA7 using the neighbor-joining method. The production of di and tri galacturonic acid due to pectinase activities of the strains were detected by thin layer chromatography (TLC) and liquid chromatography/Mass spectroscopy (LC/MS) analysis. Here is the first report of the ability to grow in tragacanth and pectinase activity monitoring in bacteria. Our results revealed that all of the isolated strains are capable of degrading pectin and tragacanth to oligo-galacturonic acids. The obtained products, which have different structures depending on the tragacanth structures and types of pectinolytic enzymes, would show therapeutic and pharmaceutical potentials.


Assuntos
Bactérias/enzimologia , Cromatografia Líquida , Espectrometria de Massas , Oligossacarídeos/análise , Poligalacturonase/metabolismo , Tragacanto/metabolismo , Acinetobacter/classificação , Acinetobacter/enzimologia , Acinetobacter/genética , Acinetobacter/crescimento & desenvolvimento , Bacillus/classificação , Bacillus/enzimologia , Bacillus/genética , Bacillus/crescimento & desenvolvimento , Bactérias/classificação , Bactérias/genética , Bactérias/crescimento & desenvolvimento , Enterobacteriaceae/classificação , Enterobacteriaceae/enzimologia , Enterobacteriaceae/genética , Enterobacteriaceae/crescimento & desenvolvimento , Estrutura Molecular , Oligossacarídeos/química , Oligossacarídeos/metabolismo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Tragacanto/química , Águas Residuárias/microbiologia
8.
Metab Eng ; 47: 414-422, 2018 05.
Artigo em Inglês | MEDLINE | ID: mdl-29719215

RESUMO

ω-Hydroxy palmitic acid (ω-HPA) is a valuable compound for an ingredient of artificially synthesized ceramides and an additive for lubricants and adhesives. Production of such a fatty acid derivative is limited by chemical catalysis, but plausible by biocatalysis. However, its low productivity issue, including formations of unsaturated fatty acid (UFA) byproducts in host cells, remains as a hurdle toward industrial biological processes. In this study, to achieve selective and high-level production of ω-HPA from glucose in Escherichia coli, FadR, a native transcriptional regulator of fatty acid metabolism, and its regulon were engineered. First, FadR was co-expressed with a thioesterase with a specificity toward palmitic acid production to enhance palmitic acid production yield, but a considerable quantity of UFAs was also produced. In order to avoid the UFA production caused by fadR overexpression, FadR regulon was rewired by i) mutating FadR consensus binding sites of fabA or fabB, ii) integrating fabZ into fabI operon, and iii) enhancing the strength of fabI promoter. This approach led to dramatic increases in both proportion (48.3-83.0%) and titer (377.8 mg/L to 675.8 mg/L) of palmitic acid, mainly due to the decrease in UFA synthesis. Introducing a fatty acid ω-hydroxylase, CYP153A35, into the engineered strain resulted in a highly selective production of ω-HPA (83.5 mg/L) accounting for 87.5% of total ω-hydroxy fatty acids. Furthermore, strategies, such as i) enhancement in CYP153A35 activity, ii) expression of a fatty acid transporter, iii) supplementation of triton X-100, and iv) separation of the ω-HPA synthetic pathway into two strains for a co-culture system, were applied and resulted in 401.0 mg/L of ω-HPA production. For such selective productions of palmitic acid and ω-HPA, the rewiring of FadR regulation in E. coli is a promising strategy to develop an industrial process with economical downstream processing.


Assuntos
Proteínas de Bactérias , Escherichia coli , Glucose , Ácidos Palmíticos/metabolismo , Regulon , Proteínas Repressoras , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Glucose/genética , Glucose/metabolismo , Proteínas Repressoras/genética , Proteínas Repressoras/metabolismo
9.
Biochim Biophys Acta Proteins Proteom ; 1866(1): 60-67, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-28821467

RESUMO

Self-sufficient CYP102As possess outstanding hydroxylating activity to fatty acids such as myristic acid. Other CYP102 subfamily members share substrate specificity of CYP102As, but, occasionally, unusual characteristics of its own subfamily have been found. In this study, only one self-sufficient cytochrome P450 from Streptomyces cattleya was renamed from CYP102A_scat to CYP102G4, purified and characterized. UV-Vis spectrometry pattern, FAD/FMN analysis, and protein sequence comparison among CYP102s have shown that CYP102 from Streptomyces cattleya belongs to CYP102G subfamily. It showed hydroxylation activity toward fatty acids generating ω-1, ω-2, and ω-3-hydroxyfatty acids, which is similar to the general substrate specificity of CYP102 family. Unexpectedly, however, expression of CYP102G4 showed indigo production in LB medium batch flask culture, and high catalytic activity (kcat/Km) for indole was measured as 6.14±0.10min-1mM-1. Besides indole, CYP102G4 was able to hydroxylate aromatic compounds such as flavone, benzophenone, and chloroindoles. Homology model has shown such ability to accept aromatic compounds is due to its bigger active site cavity. Unlike other CYP102s, CYP102G4 did not have biased cofactor dependency, which was possibly determined by difference in NAD(P)H binding residues (Ala984, Val990, and Tyr1064) compared to CYP102A1 (Arg966, Lys972 and Trp1046). Overall, a self-sufficient CYP within CYP102G subfamily was characterized using purified enzymes, which appears to possess unique properties such as an only prokaryotic CYP naturally producing indigo.


Assuntos
Proteínas de Bactérias/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Ácidos Graxos/metabolismo , Índigo Carmim/metabolismo , NADPH-Ferri-Hemoproteína Redutase/metabolismo , Streptomyces/enzimologia , Motivos de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Benzofenonas/metabolismo , Domínio Catalítico , Clonagem Molecular , Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Ácidos Graxos/química , Flavonas/metabolismo , Expressão Gênica , Hidroxilação , Indóis/metabolismo , Cinética , Modelos Moleculares , NADP/química , NADP/metabolismo , NADPH-Ferri-Hemoproteína Redutase/química , NADPH-Ferri-Hemoproteína Redutase/genética , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Streptomyces/genética , Homologia Estrutural de Proteína , Especificidade por Substrato
10.
Biomacromolecules ; 19(5): 1602-1613, 2018 05 14.
Artigo em Inglês | MEDLINE | ID: mdl-29589900

RESUMO

Prevention of biofouling and microbial contamination of implanted biomedical devices is essential to maintain their functionality and biocompatibility. For this purpose, polypept(o)ide block copolymers have been developed, in which a protein-resistant polysarcosine (pSar) block is combined with a dopamine-modified poly(glutamic acid) block for surface coating and silver nanoparticles (Ag NPs) formation. In the development of a novel, versatile, and biocompatible antibacterial surface coating, block lengths pSar were varied to derive structure-property relationships. Notably, the catechol moiety performs two important tasks in parallel; primarily it acts as an efficient anchoring group to metal oxide surfaces, while it furthermore induces the formation of Ag NPs. Attributing to the dual function of catechol moieties, antifouling pSar brush and antimicrobial Ag NPs can not only adhere stably on metal oxide surfaces, but also display passive antifouling and active antimicrobial activity, showing good biocompatibility simultaneously. The developed strategy seems to provide a promising platform for functional modification of biomaterials surface to preserve their performance while reducing the risk of bacterial infections.


Assuntos
Anti-Infecciosos/química , Catecóis/química , Dopamina/análogos & derivados , Nanopartículas/química , Ácido Poliglutâmico/análogos & derivados , Óxidos/química , Prata/química
11.
Appl Microbiol Biotechnol ; 102(1): 269-277, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29124283

RESUMO

CYP153A35 from Gordonia alkanivorans was recently characterized as fatty acid ω-hydroxylase. To enhance the catalytic activity of CYP153A35 toward palmitic acid, site-directed saturation mutagenesis was attempted using a semi-rational approach that combined structure-based computational analysis and subsequent saturation mutagenesis. Using colorimetric high-throughput screening (HTS) method based on O-demethylation activity of P450, CYP153A35 D131S and D131F mutants were selected. The best mutant, D131S, having a single mutation on BC-loop, showed 13- and 17-fold improvement in total turnover number (TTN) and catalytic efficiency (k cat/K M) toward palmitic acid compared to wild-type, respectively. However, in whole-cell reaction, D131S mutant showed only 50% improvement in ω-hydroxylated palmitic acid yield compared to the wild type. Docking simulation studies explained that the effect of D131S mutation on the catalytic activity would be mainly caused by the binding pose of fatty acids in the substrate access tunnel of the enzyme. This effect of D131S mutation on the catalytic activity is synergistic with that of the mutations in the active site previously reported.


Assuntos
Sistema Enzimático do Citocromo P-450/genética , Ácido Palmítico/metabolismo , Engenharia de Proteínas/métodos , Catálise , Domínio Catalítico , Colorimetria , Sistema Enzimático do Citocromo P-450/metabolismo , Bactéria Gordonia/enzimologia , Bactéria Gordonia/metabolismo , Ensaios de Triagem em Larga Escala , Hidroxilação , Cinética , Simulação de Acoplamento Molecular , Mutagênese Sítio-Dirigida , Mutação , Especificidade por Substrato
12.
Appl Microbiol Biotechnol ; 102(16): 6915-6921, 2018 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-29948112

RESUMO

A potent phytoestrogen, (S)-equol, is a promising isoflavone derivative drawing our great attention owing to its various biological and clinical benefits. Through selective activation of the estrogen receptor ERß or androgen receptor, (S)-equol reduces menopausal symptoms, osteoporosis, skin aging, hair loss, and incidence of prostate or ovarian cancers without adverse effects. Traditional biosynthesis of (S)-equol exploited non-productive natural equol-producing anaerobic bacteria that mainly belong to Coriobacteriaceae isolated from human intestine. Recently, we developed a recombinant Escherichia coli strain which could convert daidzein into (S)-equol effectively under an aerobic condition. However, the yield was limited up to about the 200 mg/L level due to unknown reasons. In this study, we identified that the bottleneck of the limited production was the low solubility of isoflavone (i.e., 2.4 mg/L) in the reaction medium. In order to solve the solubility problem without harmful effect to the whole-cell catalyst, we applied commercial hydrophilic polymers (HPs) and a polar aprotic co-solvent in the reaction medium. Among the examined water-soluble polymers, polyvinylpyrrolidone (PVP)-40k was verified as the most promising supplement which increased daidzein solubility by 40 times and (S)-equol yield up to 1.22 g/L, the highest ever reported and the first g/L level biotransformation. Furthermore, PVP-40k was verified to significantly increase the solubilities of other water-insoluble natural polyphenols in aqueous solution. We suggest that addition of both HP and polar aprotic solvent in the reaction mixture is a powerful alternative to enhance production of polyphenolic chemicals rather than screening appropriate organic solvents for whole-cell catalysis of polyphenols.


Assuntos
Equol/biossíntese , Microbiologia Industrial/métodos , Solventes/química , Escherichia coli/genética , Isoflavonas/química , Água/química
13.
Appl Environ Microbiol ; 82(7): 1992-2002, 2016 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-26801575

RESUMO

(S)-Equol, a gut bacterial isoflavone derivative, has drawn great attention because of its potent use for relieving female postmenopausal symptoms and preventing prostate cancer. Previous studies have reported on the dietary isoflavone metabolism of several human gut bacteria and the involved enzymes for conversion of daidzein to (S)-equol. However, the anaerobic growth conditions required by the gut bacteria and the low productivity and yield of (S)-equol limit its efficient production using only natural gut bacteria. In this study, the low (S)-equol biosynthesis of gut microorganisms was overcome by cloning the four enzymes involved in the biosynthesis from Slackia isoflavoniconvertens into Escherichia coli BL21(DE3). The reaction conditions were optimized for (S)-equol production from the recombinant strain, and this recombinant system enabled the efficient conversion of 200 µM and 1 mM daidzein to (S)-equol under aerobic conditions, achieving yields of 95% and 85%, respectively. Since the biosynthesis of trans-tetrahydrodaidzein was found to be a rate-determining step for (S)-equol production, dihydrodaidzein reductase (DHDR) was subjected to rational site-directed mutagenesis. The introduction of the DHDR P212A mutation increased the (S)-equol productivity from 59.0 mg/liter/h to 69.8 mg/liter/h in the whole-cell reaction. The P212A mutation caused an increase in the (S)-dihydrodaidzein enantioselectivity by decreasing the overall activity of DHDR, resulting in undetectable activity for (R)-dihydrodaidzein, such that a combination of the DHDR P212A mutant with dihydrodaidzein racemase enabled the production of (3S,4R)-tetrahydrodaidzein with an enantioselectivity of >99%.


Assuntos
Actinobacteria/enzimologia , Proteínas de Bactérias/genética , Equol/biossíntese , Escherichia coli/metabolismo , Isoflavonas/metabolismo , Oxirredutases/genética , Actinobacteria/genética , Proteínas de Bactérias/metabolismo , Equol/química , Escherichia coli/genética , Mutação , Oxirredutases/metabolismo , Estereoisomerismo
14.
Appl Microbiol Biotechnol ; 100(24): 10375-10384, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27344594

RESUMO

Bacterial cytochrome P450 enzymes in cytochrome P450 (CYP)153 family were recently reported as fatty acid ω-hydroxylase. Among them, CYP153As from Marinobacter aquaeolei VT8 (CYP153A33), Alcanivorax borkumensis SK2 (CYP153A13), and Gordonia alkanivorans (CYP153A35) were selected, and their specific activities and product yields of ω-hydroxy palmitic acid based on whole cell reactions toward palmitic acid were compared. Using CamAB as redox partner, CYP153A35 and CYP153A13 showed the highest product yields of ω-hydroxy palmitic acid in whole cell and in vitro reactions, respectively. Artificial self-sufficient CYP153A35-BMR was constructed by fusing it to the reductase domain of CYP102A1 (i.e., BM3) from Bacillus megaterium, and its catalytic activity was compared with CYP153A35 and CamAB systems. Unexpectedly, the system with CamAB resulted in a 1.5-fold higher yield of ω-hydroxy palmitic acid than that using A35-BMR in whole cell reactions, whereas the electron coupling efficiency of CYP153A35-BM3 reductase was 4-fold higher than that of CYP153A35 and CamAB system. Furthermore, various CamAB expression systems according to gene arrangements of the three proteins and promoter strength in their gene expression were compared in terms of product yields and productivities. Tricistronic expression of the three proteins in the order of putidaredoxin (CamB), CYP153A35, and putidaredoxin reductase (CamA), i.e., A35-AB2, showed the highest product yield from 5 mM palmitic acid for 9 h in batch reaction owing to the concentration of CamB, which is the rate-limiting factor for the activity of CYP153A35. However, in fed-batch reaction, A35-AB1, which expressed the three proteins individually using three T7 promoters, resulted with the highest product yield of 17.0 mM (4.6 g/L) ω-hydroxy palmitic acid from 20 mM (5.1 g/L) palmitic acid for 30 h.


Assuntos
Alcanivoraceae/enzimologia , Sistema Enzimático do Citocromo P-450/metabolismo , Bactéria Gordonia/enzimologia , Marinobacter/enzimologia , Ácidos Palmíticos/metabolismo , Sistema Enzimático do Citocromo P-450/genética , Transporte de Elétrons , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
15.
Appl Microbiol Biotechnol ; 99(16): 6667-76, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25957153

RESUMO

Hydroxylated fatty acids (HFAs) are used as important precursors for bulk and fine chemicals in the chemical industry. Here, to overproduce long-chain (C16-C18) fatty acids and hydroxy fatty acid, their biosynthetic pathways including thioesterase (Lreu_0335) from Lactobacillus reuteri DSM20016, ß-hydroxyacyl-ACP dehydratase (fabZ) from Escherichia coli, and a P450 system (i.e., CYP153A from Marinobacter aquaeolei VT8 and camA/camB from Pseudomonas putida ATCC17453) were overexpressed. Acyl-CoA synthase (fadD) involved in fatty acid degradation by ß-oxidation was also deleted in E. coli BW25113. The engineered E. coli FFA4 strain without the P450 system could produce 503.0 mg/l of palmitic (C16) and 508.4 mg/l of stearic (C18) acids, of which the amounts are ca. 1.6- and 2.3-fold higher than those of the wild type. On the other hand, the E. coli HFA4 strain including the P450 system for ω-hydroxylation could produce 211.7 mg/l of ω-hydroxy palmitic acid, which was 42.1 ± 0.1 % of the generated palmitic acid, indicating that the hydroxylation reaction was the rate-determining step for the HFA production. For the maximum production of ω-hydroxy palmitic acid, NADH, i.e., an essential cofactor for P450 reaction, was overproduced by the integration of NAD(+)-dependent formate dehydrogenase (FDH) from Candida boidinii into E. coli chromosome and the deletion of alcohol dehydrogenase (ADH). Finally, the NADH-level-optimized E. coli strain produced 610 mg/l of ω-hydroxy palmitic acid (ω-HPA), which was almost a threefold increase in its yield compared to the same strain without NADH overproduction.


Assuntos
Vias Biossintéticas/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Engenharia Metabólica , Ácidos Palmíticos/metabolismo , Candida/genética , Limosilactobacillus reuteri/genética , Marinobacter/genética , Pseudomonas putida/genética
16.
Sci Adv ; 10(18): eadg8771, 2024 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-38691600

RESUMO

To facilitate the interrogation of protein function at scale, we have developed high-throughput insertion of tags across the genome (HITAG). HITAG enables users to rapidly produce libraries of cells, each with a different protein of interest C-terminally tagged. HITAG is based on a modified strategy for performing Cas9-based targeted insertions, coupled with an improved approach for selecting properly tagged lines. Analysis of the resulting clones generated by HITAG reveals high tagging specificity, with most successful tagging events being indel free. Using HITAG, we fuse mCherry to a set of 167 stress granule-associated proteins and elucidate the features that drive a subset of proteins to strongly accumulate within these transient RNA-protein granules.


Assuntos
Loci Gênicos , Humanos , Sistemas CRISPR-Cas , Proteínas/genética , Proteínas/metabolismo , Ensaios de Triagem em Larga Escala/métodos , Grânulos Citoplasmáticos/metabolismo , Grânulos Citoplasmáticos/genética
17.
Anal Methods ; 15(34): 4252-4259, 2023 Aug 31.
Artigo em Inglês | MEDLINE | ID: mdl-37591803

RESUMO

A supraparticle is a spherical superstructure composed of fine building blocks, typically synthesized through colloidal assembly from evaporating and contracting suspension droplets. Microfluidic emulsification is known to be effective in producing large amounts of water-in-oil droplets. However, the process of supraparticle self-assembly has been limited by the evaporation of the oil that supports it and the sluggish shrinkage of water droplets. These are caused by the high volatility and low diffusion rates of water in the bulk oil layer, making the process last hours or even days. To address these challenges, we introduce a new system in this paper: the supraparticle reliable fabrication (SURF) system. This microfluidic-based system can quickly and reliably assemble spherical supraparticles in 20 min. The SURF system combines a conventional flow focusing device with a thinly layered low-volatile/water-soluble oil, and an open-microfluidic droplet evaporator. This setup facilitates the creation of uniform supraparticles with various materials and diameters (coefficient of variation: <3.5%). As a proof-of-concept for potential biochemical applications, we demonstrate a sensitive chemical reaction on the fabricated supraparticles, emphasizing the effectiveness of the SURF system as an alternative to traditional supraparticle synthesis and particle-based applications.

18.
Langmuir ; 28(30): 11250-7, 2012 Jul 31.
Artigo em Inglês | MEDLINE | ID: mdl-22746551

RESUMO

We report the drop impact characteristics on four hydrophobic surfaces with different well-scale structures (smooth, nano, micro, and hierarchical micro/nano) and the effects of those structures on the behavior of water drops during impact. The specimens were fabricated using silicon wet etching, black silicon formation, or the combination of these methods. On the surfaces, the microstructures form obstacles to drop spreading and retracting, the nanostructures give extreme water-repellency, and the hierarchical micro/nanostructures facilitate drop fragmentation. The maximum spreading factor (D*(max)) differed among the structures. On the basis of published models of D*(max), we interpret the results of our experiment and suggest reasonable explanations for these differences. Especially, the micro/nanostructures caused instability of the interface between liquid and air at Weber number We > ~80 and impacting drops fragmented at We > ~150.

19.
Langmuir ; 28(5): 2614-9, 2012 Feb 07.
Artigo em Inglês | MEDLINE | ID: mdl-22224927

RESUMO

Recently, there has been intensive research on the use of nanotechnology to improve the wettability of solid surfaces. It is well-known that nanostructures can improve the wettability of a surface, and this is a very important safety consideration in regard to the occurrence of boiling crises during two-phase heat transfer, especially in the operation of nuclear power plant systems. Accordingly, there is considerable interest in wetting phenomena on nanostructures in the field of nuclear heat transfer. Much of the latest research on liquid absorption on a surface with nanostructures indicates that liquid spreading is generated by capillary wicking. However, there has been comparatively little research on how capillary forces affect liquid spreading on a surface with nanotubes. In this paper, we present a visualization of liquid spreading on a zircaloy surface with nanotubes, and establish a simple quantitative method for measuring the amount of water absorbed by the nanotubes. We successfully describe liquid spreading on a two-dimensional surface via one-dimensional analysis. As a result, we are able to postulate a relationship between liquid spreading and capillary wicking in the nanotubes.

20.
J Colloid Interface Sci ; 623: 54-62, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-35569223

RESUMO

Despite the successful implementation of elegant strategies for the fabrication of Janus microstructures, two critical factors have limited the applicability of most techniques for the partial modification of living cell surfaces: harsh conditions that could disintegrate cells, and the lack of an effective route to accomplish a mild modification for living cells. In this study, an expeditious synthesis, named lower-half occupation by capillary ascended liquids (LOCAL), is proposed for the fabrication of asymmetrical structures surrounding not only microbeads but also both living adherent and buoyant mammalian cells. The microbeads or living cells are safely supported and trapped on the apical sides of a micropillar array, which prevents them from contacting the bottom substrate. As the coating agents further transfer and contact the trapped particles through interpillar capillary flow, the autonomous capillary ascending coats the free bottom surfaces of the target particles within 2 min, with significantly small quantities of coating agents. The self-assembled architectures of the cells demonstrate thoroughly maintained cell viability, highlighting the potential of the LOCAL method as a desirable alternative to the widely applied state-of-art methods for developing Janus beads and Janus cells.


Assuntos
Mamíferos , Animais
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