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Acta Crystallogr F Struct Biol Commun ; 73(Pt 12): 672-681, 2017 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-29199988

RESUMO

The Gram-negative bacterium Sphingomonas wittichii RW1 is notable for its ability to metabolize a variety of aromatic hydrocarbons. Not surprisingly, the S. wittichii genome contains a number of putative aromatic hydrocarbon-degrading gene clusters. One of these includes an enzyme of unknown function, Swit_4259, which belongs to the acetoacetate decarboxylase-like superfamily (ADCSF). Here, it is reported that Swit_4259 is a small (28.8 kDa) tetrameric ADCSF enzyme that, unlike the prototypical members of the superfamily, does not have acetoacetate decarboxylase activity. Structural characterization shows that the tertiary structure of Swit_4259 is nearly identical to that of the true decarboxylases, but there are important differences in the fine structure of the Swit_4259 active site that lead to a divergence in function. In addition, it is shown that while it is a poor substrate, Swit_4259 can catalyze the hydration of 2-oxo-hex-3-enedioate to yield 2-oxo-4-hydroxyhexanedioate. It is also demonstrated that Swit_4259 has pyruvate aldolase-dehydratase activity, a feature that is common to all of the family V ADCSF enzymes studied to date. The enzymatic activity, together with the genomic context, suggests that Swit_4259 may be a hydratase with a role in the metabolism of an as-yet-unknown hydrocarbon. These data have implications for engineering bioremediation pathways to degrade specific pollutants, as well as structure-function relationships within the ADCSF in general.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Carboxiliases/química , Sphingomonas/enzimologia , Acetoacetatos/química , Acetoacetatos/metabolismo , Proteínas de Bactérias/genética , Carboxiliases/genética , Carboxiliases/metabolismo , Domínio Catalítico , Cristalografia por Raios X , Ácidos Cetoglutáricos/metabolismo , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Conformação Proteica , Ácido Pirúvico/química , Ácido Pirúvico/metabolismo , Espectrometria de Massas por Ionização por Electrospray , Especificidade por Substrato
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