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1.
Fish Physiol Biochem ; 48(6): 1665-1684, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36459361

RESUMO

Cell growth and differentiation signals of insulin-like growth factor-1 (IGF-1), a key regulator in embryonic and postnatal development, are mediated through the IGF-1 receptor (IGF-1R), which activates several downstream pathways. The present study aims to address crucial organogenesis and development pathways including Akt, MAPKs, heat shock response, apoptotic and autophagic machinery, and energy metabolism in relation to IGF-1R activation during five developmental stages of reared Seriola dumerili: 1 day prior to hatching fertilized eggs (D-1), hatching day (D0), 3 days post-hatching larvae (D3), 33 (D33) and 46 (D46) days post-hatching juveniles. During both the fertilized eggs stage and larval-to-juvenile transition, IGF-1R/Akt pathway activation may mediate the hypertrophic signaling, while p44/42 MAPK phosphorylation was apparent at S. dumerili post-hatching processes and juvenile organs completion. On the contrary, apoptosis was induced during embryogenesis and autophagy at hatching day indicating a potential involvement in morphogenetic rearrangements and yolk-sac reserves depletion. Larvae morphogenesis was accompanied by a metabolic turnover with increased substantial energy consumption. The findings of the present study demonstrate the developmental stages-specific shift in critical signaling pathways during the ontogeny of reared S. dumerili.


Assuntos
Perciformes , Proteínas Proto-Oncogênicas c-akt , Animais , Proteínas Proto-Oncogênicas c-akt/metabolismo , Mitógenos , Transdução de Sinais , Perciformes/fisiologia , Fator de Crescimento Insulin-Like I/metabolismo , Receptor IGF Tipo 1 , Larva/metabolismo , Morte Celular
2.
Microb Ecol ; 81(2): 460-470, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-32840670

RESUMO

In this study, we hypothesized that sympatrically grown farmed fish, i.e. fish which experience similar environmental conditions and nutritionally similar diets, would have more convergent gut microbiota. Using a "common garden" approach, we identified the core microbiota and bacterial community structure differences between five fish species farmed in the same aquaculture site on the west coast of the Aegean Sea, Greece. The investigated individuals were at similar developmental stages and reared in adjacent (< 50 m) aquaculture cages; each cage had 15 kg fish m-3. The diets were nutritionally similar to support optimal growth for each fish species. DNA from the midgut of 3-6 individuals per fish species was extracted and sequenced for the V3-V4 region of the bacterial 16S rRNA. Only 3.9% of the total 181 operational taxonomic units (OTUs) were shared among all fish. Between 5 and 74 OTUs were unique to each fish species. Each of the investigated fish species had a distinct profile of dominant OTUs, i.e. cumulative relative abundance of ≥ 80%. Co-occurrence network analysis for each fish species showed that all networks were strongly dominated by positive correlations between the abundances of their OTUs. However, each fish species had different network characteristics suggesting the differential significance of the OTUs in each of the five fish species midgut. The results of the present study may provide evidence that adult fish farmed in the Mediterranean Sea have a rather divergent and species-specific gut microbiota profile, which are shaped independently of the similar environmental conditions under which they grow.


Assuntos
Pesqueiros , Peixes/microbiologia , Microbioma Gastrointestinal , Animais , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Dieta/veterinária , Peixes/classificação , Peixes/crescimento & desenvolvimento , Grécia , Mar Mediterrâneo , RNA Ribossômico 16S , Especificidade da Espécie
3.
Ecotoxicol Environ Saf ; 143: 193-200, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28550806

RESUMO

This study investigated the microcystins (MCs)-rich irrigation water effect on lettuce of different developmental stages, i.e. during a two months period, covering the whole period from seed germination to harvest at marketable size of the plant. We followed four lettuce plant groups receiving MCs-rich water (1.81µgl-1 of dissolved MCs), originating from the Karla Reservoir, central Greece: 1) from seeds, 2) the cotyledon, 3) two true leaves and 4) four true leaves stages, all of which were compared to control plants that received tap water. Lettuce growth, photosynthetic performance, biochemical and mineral characteristics, as well as MCs accumulation in leaves, roots and soil were measured. The overall performance of lettuce at various developmental stages pointed to increased tolerance since growth showed minor alterations and non-enzymatic antioxidants remained unaffected. Plants receiving MCs-rich water from the seed stage exhibited higher photosynthetic capacity, chlorophylls and leaf nitrogen content. Nevertheless, considerable MCs accumulation in various plant tissues occurred. The earlier in their development lettuce plants started receiving MCs-rich water, the more MCs they accumulated: roots and leaves of plants exposed to MCs-rich water from seeds and cotyledons stage exhibited doubled MCs concentrations compared to respective tissues of the 4 Leaves group. Furthermore, roots accumulated significantly higher MCs amounts than leaves of the same plant group. Concerning human health risk, the Estimated Daily Intake values (EDI) of Seed and Cotyledon groups leaves exceeded Tolerable Daily Intake (TDI) by a factor of 6, while 2 Leaves and 4 Leaves groups exceeded TDI by a factor of 4.4 and 2.4 respectively. Our results indicate that irrigation of lettuce with MCs-rich water may constitute a serious public health risk, especially when contaminated water is received from the very early developmental stages (seed and cotyledon). Finally, results obtained for the tolerant lettuce indicate that MCs bioaccumulation in edible tissues is not necessarily coupled with phytotoxic effects.


Assuntos
Lactuca/efeitos dos fármacos , Microcistinas/farmacocinética , Microcistinas/toxicidade , Poluentes Químicos da Água/farmacocinética , Poluentes Químicos da Água/toxicidade , Irrigação Agrícola , Grécia , Humanos , Lactuca/crescimento & desenvolvimento , Lactuca/metabolismo , Fotossíntese/efeitos dos fármacos , Folhas de Planta/efeitos dos fármacos , Folhas de Planta/crescimento & desenvolvimento , Folhas de Planta/metabolismo , Raízes de Plantas/efeitos dos fármacos , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/metabolismo , Medição de Risco
4.
BMC Biol ; 13: 105, 2015 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-26652623

RESUMO

BACKGROUND: The deep-sea hypersaline anoxic basins (DHABs) of the Mediterranean (water depth ~3500 m) are some of the most extreme oceanic habitats known. Brines of DHABs are nearly saturated with salt, leading many to suspect they are uninhabitable for eukaryotes. While diverse bacterial and protistan communities are reported from some DHAB haloclines and brines, loriciferans are the only metazoan reported to inhabit the anoxic DHAB brines. Our goal was to further investigate metazoan communities in DHAB haloclines and brines. RESULTS: We report observations from sediments of three DHAB (Urania, Discovery, L'Atalante) haloclines, comparing these to observations from sediments underlying normoxic waters of typical Mediterranean salinity. Due to technical difficulties, sampling of the brines was not possible. Morphotype analysis indicates nematodes are the most abundant taxon; crustaceans, loriciferans and bryozoans were also noted. Among nematodes, Daptonema was the most abundant genus; three morphotypes were noted with a degree of endemicity. The majority of rRNA sequences were from planktonic taxa, suggesting that at least some individual metazoans were preserved and inactive. Nematode abundance data, in some cases determined from direct counts of sediments incubated in situ with CellTracker(TM) Green, was patchy but generally indicates the highest abundances in either normoxic control samples or in upper halocline samples; nematodes were absent or very rare in lower halocline samples. Ultrastructural analysis indicates the nematodes in L'Atalante normoxic control sediments were fit, while specimens from L'Atalante upper halocline were healthy or had only recently died and those from the lower halocline had no identifiable organelles. Loriciferans, which were only rarely encountered, were found in both normoxic control samples as well as in Discovery and L'Atalante haloclines. It is not clear how a metazoan taxon could remain viable under this wide range of conditions. CONCLUSIONS: We document a community of living nematodes in normoxic, normal saline deep-sea Mediterranean sediments and in the upper halocline portions of the DHABs. Occurrences of nematodes in mid-halocline and lower halocline samples did not provide compelling evidence of a living community in those zones. The possibility of a viable metazoan community in brines of DHABs is not supported by our data at this time.


Assuntos
Distribuição Animal , Biodiversidade , Sedimentos Geológicos/química , Invertebrados/fisiologia , Anaerobiose , Animais , Invertebrados/classificação , Mar Mediterrâneo , Oxirredução , RNA Ribossômico/análise , Salinidade , Análise de Sequência de DNA
5.
J Sci Food Agric ; 95(12): 2386-94, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25312872

RESUMO

BACKGROUND: Sea bream fillets are one of the most important value-added products of the seafood market. Fresh seafood spoils mainly owing to bacterial action. In this study an exploration of initial and spoilage microbiota of sea bream fillets stored under air and commercial modified atmosphere packaging (MAP) at 0 and 5 °C was conducted by 16S rRNA gene sequence analysis of isolates grown on plates. Sensory evaluation and enumeration of total viable counts and spoilage microorganisms were also conducted to determine shelf life and bacterial growth respectively. RESULTS: Different temperatures and atmospheres affected growth and synthesis of spoilage microbiota as well as shelf life. Shelf life under air at 0 and 5 °C was 14 and 5 days respectively, while under MAP it was 20 and 8 days respectively. Initial microbiota were dominated by Pseudomonas fluorescens, Psychrobacter and Macrococcus caseolyticus. Different temperatures and atmospheres affected the synthesis of spoilage microbiota. At the end of shelf life, different phylotypes of Pseudomonas closely related to Pseudomonas fragi were found to dominate in most cases, while Pseudomonas veronii dominated in fillets under MAP at 0 °C. Furthermore, in fillets under MAP at 5 °C, new dominant species such as Carnobacterium maltaromaticum, Carnobacterium divergens and Vagococcus fluvialis were revealed. CONCLUSION: Different temperature and atmospheric conditions affected bacterial growth, shelf life and the synthesis of spoilage microbiota. Molecular identification revealed species and strains of microorganisms that have not been reported before for sea bream fillets stored under various conditions, thus providing valuable information regarding microbiological spoilage.


Assuntos
Produtos Pesqueiros/microbiologia , Microbiologia de Alimentos , Conservação de Alimentos , Dourada , Animais , Bactérias/genética , Bactérias/isolamento & purificação , Contagem de Colônia Microbiana , DNA Bacteriano/genética , Humanos , Filogenia , RNA Ribossômico 16S/genética , Temperatura
6.
Animals (Basel) ; 13(13)2023 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-37443952

RESUMO

Metamorphosis entails hormonally regulated morphological and physiological changes requiring high energy levels. Probiotics as feed supplements generate ameliorative effects on host nutrient digestion and absorption. Thereby, the aim of the present research was to investigate the impact of the probiotic Phaeobacter inhibens as a water additive on cellular signaling pathways in the metamorphosis of greater amberjack (Seriola dumerili). Activation of insulin-like growth factor type 1 receptor (IGF-1R), protein kinase B (Akt), mitogen-activated protein kinases (MAPKs) and AMP-activated protein kinase (AMPK), induction of heat shock proteins (Hsps), and programmed cell death were assessed through SDS-Page/immunoblot analysis, while energy metabolism was determined through enzymatic activities. According to the results, greater amberjack reared in P. inhibens-enriched water entered the metamorphic phase with greater body length, while protein synthesis was triggered to facilitate the hypertrophic growth as indicated by IGF-1/Akt activation and AMPK inhibition. Contrarily, MAPKs levels were reduced, whereas variations in Hsps response were evident in the probiotic treatment. Apoptosis and autophagy were mobilized potentially for the structural remodeling processes. Furthermore, the elevated enzymatic activities of intermediary metabolism highlighted the excess energy demands of metamorphosis. Collectively, the present findings demonstrate that P. inhibens may reinforce nutrient utilization, thus leading greater amberjack to an advanced growth and developmental state.

7.
ScientificWorldJournal ; 2012: 504135, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22654619

RESUMO

Lake Karla, Greece, was dried up in 1962 and its refilling started in 2009. We examined the Cyanobacteria and unicellular eukaryotes found during two fish kill incidents, in March and April 2010, in order to detect possible causative agents. Both microscopic and molecular (16S/18S rRNA gene diversity) identification were applied. Potentially toxic Cyanobacteria included representatives of the Planktothrix and Anabaena groups. Known toxic eukaryotes or parasites related to fish kill events were Prymnesium parvum and Pfiesteria cf. piscicida, the latter being reported in an inland lake for the second time. Other potentially harmful microorganisms, for fish and other aquatic life, included representatives of Fungi, Mesomycetozoa, Alveolata, and Heterokontophyta (stramenopiles). In addition, Euglenophyta, Chlorophyta, and diatoms were represented by species indicative of hypertrophic conditions. The pioneers of L. Karla's plankton during the first months of its water refilling process included species that could cause the two observed fish kill events.


Assuntos
Doenças dos Peixes/microbiologia , Peixes/microbiologia , Plâncton/patogenicidade , Anabaena/patogenicidade , Animais , Cianobactérias/patogenicidade , Grécia , Lagos , Pfiesteria piscicida/patogenicidade
8.
Sci Rep ; 12(1): 121, 2022 01 07.
Artigo em Inglês | MEDLINE | ID: mdl-34996900

RESUMO

Herein, the effect of dietary inclusion of insect (Tenebrio molitor) meal on hepatic pathways of apoptosis and autophagy in three farmed fish species, gilthead seabream (Sparus aurata), European seabass (Dicentrarchus labrax) and rainbow trout (Oncorhynchus mykiss), fed diets at 25%, 50% and 60% insect meal inclusion levels respectively, was investigated. Hepatic proteome was examined by liver protein profiles from the three fish species, obtained by two-dimensional gel electrophoresis. Although cellular stress was evident in the three teleost species following insect meal, inclusion by T. molitor, D. labrax and O. mykiss suppressed apoptosis through induction of hepatic autophagy, while in S. aurata both cellular procedures were activated. Protein abundance showed that a total of 30, 81 and 74 spots were altered significantly in seabream, European seabass and rainbow trout, respectively. Insect meal inclusion resulted in individual protein abundance changes, with less number of proteins altered in gilthead seabream compared to European seabass and rainbow trout. This is the first study demonstrating that insect meal in fish diets is causing changes in liver protein abundances. However, a species-specific response both in the above mentioned bioindicators, indicates the need to strategically manage fish meal replacement in fish diets per species.


Assuntos
Ração Animal , Apoptose , Autofagia , Insetos Comestíveis/embriologia , Proteínas de Peixes/metabolismo , Pesqueiros , Peixes/metabolismo , Fígado/metabolismo , Proteoma , Tenebrio/embriologia , Animais , Bass/metabolismo , Larva , Valor Nutritivo , Oncorhynchus mykiss/metabolismo , Proteômica , Dourada/metabolismo , Especificidade da Espécie
9.
Environ Pollut ; 312: 120038, 2022 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-36030951

RESUMO

Understanding the processes that underlay an ecological disaster represents a major scientific challenge. Here, we investigated phytoplankton and zooplankton community changes before and during a fauna mass kill in a European protected wetland. Evidence on gradual development and collapse of harmful phytoplankton blooms, allowed us to delineate the biotic and abiotic interactions that led to this ecological disaster. Before the mass fauna kill, mixed blooms of known harmful cyanobacteria and the killer alga Prymnesium parvum altered biomass flow and minimized zooplankton resource use efficiency. These blooms collapsed under high nutrient concentrations and inhibitory ammonia levels, with low phytoplankton biomass leading to a dramatic drop in photosynthetic oxygenation and a shift to a heterotrophic ecosystem phase. Along with the phytoplankton collapse, extremely high numbers of red planktonic crustaceans-Daphnia magna, visible through satellite images, indicated low oxygen conditions as well as a decrease or absence of fish predation pressure. Our findings provide clear evidence that the mass episode of fish and birds kill resulted through severe changes in phytoplankton and zooplankton dynamics, and the alternation on key abiotic conditions. Our study highlights that plankton-related ecosystem functions mirror the accumulated heavy anthropogenic impacts on freshwaters and could reflect a failure in conservation and restoration measures.


Assuntos
Ecossistema , Fitoplâncton , Amônia , Animais , Aves , Peixes , Oxigênio , Plâncton , Áreas Alagadas , Zooplâncton
10.
Microb Ecol ; 62(3): 655-68, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21538105

RESUMO

We investigated the top 30-cm sediment prokaryotic community structure in 5-cm spatial resolution, at an active site of the Amsterdam mud volcano, East Mediterranean Sea, based on the 16S rRNA gene diversity. A total of 339 and 526 sequences were retrieved, corresponding to 25 and 213 unique (≥98% similarity) phylotypes of Archaea and Bacteria, respectively, in all depths. The Shannon-Wiener diversity index H was higher for Bacteria (1.92-4.03) than for Archaea (0.99-1.91) and varied differently between the two groups. Archaea were dominated by anaerobic methanotrophs ANME-1, -2 and -3 groups and were related to phylotypes involved in anaerobic oxidation of methane from similar habitats. The much more complex Bacteria community consisted of 20 phylogenetic groups at the phylum/candidate division level. Proteobacteria, in particular δ-Proteobacteria, was the dominant group. In most sediment layers, the dominant phylotypes of both the Archaea and Bacteria communities were found in neighbouring layers, suggesting some overlap in species richness. The similarity of certain prokaryotic communities was also depicted by using four different similarity indices. The direct comparison of the retrieved phylotypes with those from the Kazan mud volcano of the same field revealed that 40.0% of the Archaea and 16.9% of the Bacteria phylotypes are common between the two systems. The majority of these phylotypes are closely related to phylotypes originating from other mud volcanoes, implying a degree of endemicity in these systems.


Assuntos
Archaea/isolamento & purificação , Bactérias/isolamento & purificação , Biodiversidade , Sedimentos Geológicos/microbiologia , Archaea/genética , Archaea/crescimento & desenvolvimento , Bactérias/genética , Bactérias/crescimento & desenvolvimento , DNA Arqueal/genética , DNA Bacteriano/genética , Sedimentos Geológicos/química , Mar Mediterrâneo , Filogenia , RNA Ribossômico 16S/genética , Água do Mar/química , Água do Mar/microbiologia , Análise de Sequência de DNA , Microbiologia da Água
11.
Environ Monit Assess ; 181(1-4): 563-75, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21213042

RESUMO

Phytoplankton and water quality of Marathonas drinking-water Reservoir were examined for the first time. During the study period (July-September 2007), phytoplankton composition was indicative of eutrophic conditions although phytoplankton biovolume was low (max. 2.7 mm³ l⁻¹). Phytoplankton was dominated by cyanobacteria and diatoms, whereas desmids and dinoflagellates contributed with lower biovolume values. Changing flushing rate in the reservoir (up to 0.7% of reservoir's water volume per day) driven by water withdrawal and occurring in pulses for a period of 15-25 days was associated with phytoplankton dynamics. Under flushing pulses: (1) biovolume was low and (2) both 'good' quality species and the tolerant to flushing 'nuisance' cyanobacterium Microcystis aeruginosa dominated. According to the Water Framework Directive, the metrics of phytoplankton biovolume and cyanobacterial percentage (%) contribution indicated a moderate ecological water quality. In addition, the total biovolume of cyanobacteria as well as the dominance of the known toxin-producing M. aeruginosa in the reservoir's phytoplankton indicated a potential hazard for human health according to the World Health Organization.


Assuntos
Fitoplâncton/crescimento & desenvolvimento , Microbiologia da Água , Qualidade da Água/normas , Abastecimento de Água/estatística & dados numéricos , Água Potável/química , Eutrofização , Grécia , Microcystis/crescimento & desenvolvimento , Microcystis/isolamento & purificação , Fitoplâncton/isolamento & purificação , Estações do Ano
12.
Environ Monit Assess ; 173(1-4): 155-65, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20195748

RESUMO

The structure of the cyanobacterial community in a large drinking water reservoir (Marathonas, Greece) was investigated in October 2007 and September 2008. Cyanobacteria-specific primers were used for the PCR amplification of cyanobacterial 16S rDNAs from three water column sites and the water collection tank. In total, 199 clones were sequenced representing 52 unique cyanobacterial, including chloroplast-related, and 11 non-cyanobacterial phylotypes. All cyanobacterial phylotypes belonged to the order Chroococcales. Cluster analysis showed that the cyanobacterial communities in 2007 in the three water column sites showed high similarity between the stations and low diversity (H=1.17-1.44), due to the occurring common phylotypes, while all sites in 2008 had very low similarities between them and higher diversity (H=1.56-2.40). Some of the most abundant phylotypes were closely related (>98%) to members of the genus Gloeocapsa and a potentially toxin-producing strain of Microcystis aeruginosa. The non-cyanobacterial phylotypes were either unaffiliated or belonged to the Verrucomicrobia, and were related with sequences originating from lake water habitats.


Assuntos
Cianobactérias/genética , Abastecimento de Água/análise , Cianobactérias/classificação , Grécia , Microcystis/classificação , Microcystis/genética , RNA Ribossômico 16S/genética , Microbiologia da Água
13.
Microorganisms ; 9(4)2021 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-33800578

RESUMO

Insect meals are considered promising, eco-friendly, alternative ingredients for aquafeed. Considering the dietary influence on establishment of functioning gut microbiota, the effect of the insect meal diets on the microbial ecology should be addressed. The present study assessed diet- and species-specific shifts in gut resident bacterial communities of juvenile reared Dicentrarchus labrax and Sparus aurata in response to three experimental diets with insect meals from three insects (Hermetia illucens, Tenebrio molitor, Musca domestica), using high-throughput Illumina sequencing of the V3-V4 region of the 16S rRNA gene. The dominant phyla were Firmicutes, Proteobacteria and Actinobacteria in all dietary treatments. Anaerococcus sp., Cutibacterium sp. and Pseudomonas sp. in D. labrax, and Staphylococcus sp., Hafnia sp. and Aeromonas sp. in S. aurata were the most enriched shared species, following insect-meal inclusion. Network analysis of the dietary treatments highlighted diet-induced changes in the microbial community assemblies and revealed unique and shared microbe-to-microbe interactions. PICRUSt-predicted Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were significantly differentiated, including genes associated with metabolic pathways. The present findings strengthen the importance of diet in microbiota configuration and underline that different insects as fish feed ingredients elicit species-specific differential responses of structural and functional dynamics in gut microbial communities.

14.
Arch Environ Contam Toxicol ; 58(1): 71-8, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19495844

RESUMO

Colonization and succession of an epibiotic animal community on chromated copper arsenate (CCA)-treated wood were studied for 18 months in the eastern Mediterranean (Saronikos Gulf, Aegean Sea). Pine wood panels, 200 x 100 x 25 mm, impregnated with CCA at retentions of 0, 12, 24, and 48 kg m(-3) were used. The abundance or surface coverage of the most characteristic taxa (polychaetes, mollusca, crustacea bryozoa, sponges, ascidians) was measured in situ, while 12 months after submersion two panels of each retention were removed and examined in the laboratory. A total of 26 taxa were identified, among which polychaetes of the family Serpulidae dominated. The controls carried the largest number of species (17) but the lowest number of individuals. On panels with CCA retentions of 12 and 24 kg m(-3), 14 and 16 species were observed, respectively, while at 48 kg m(-3), only 9 species were found. Only the controls were affected by boring bivalves of the family Teredinidae and started to break up within 3 months of submersion. Statistically significant differences in barnacle and polychaete abundance were found between treated and untreated panels. There were no significant differences among panels treated at the three CCA loadings. Ordination by nonmetric multidimensional scaling showed a seasonal effect on the colonization of the treated panels, with the highest recruitment during the warmer months of the study.


Assuntos
Arseniatos/toxicidade , Poluentes Químicos da Água/toxicidade , Animais , Bivalves/efeitos dos fármacos , Poliquetos/efeitos dos fármacos , Urocordados/efeitos dos fármacos , Madeira
15.
Environ Monit Assess ; 165(1-4): 27-38, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19404754

RESUMO

We analyzed the bacterial 16S rRNA gene diversity throughout the major components of the drinking water distribution system of a ca. 52,000-inhabitants city (Trikala City, Greece) in order to describe the changes of the bacterial assemblages and to detect possible bacterial pathogens which are not included in the standard monitoring process. Bacterial DAPI counts and DNA extraction was performed in the water pumping wells, the water treatment tank and tap water from households. Approximately 920 bp of the bacterial 16S rDNA were PCR-amplified, cloned, and sequenced for a total of 191 clones, which belonged to 112 unique phylotypes. The water of the pumping wells harbored a typical subsurface bacterial assemblage, with no human pathogens, dominated by beta-Proteobacteria. Cell abundance in the water treatment tank decreased significantly, close to detection limit, but bacterial diversity remained high. However, the dominance of beta-Proteobacteria decreased considerably, indicating the sensitivity of this group to drinking water disinfection treatment. Tap water from the households hosted a much less diverse, low-cell bacterial assemblage, dominated by Mycobacterium-like phylotypes, related to biofilm bacterial communities.


Assuntos
Bactérias/isolamento & purificação , RNA Ribossômico 16S/análise , População Urbana , Microbiologia da Água , Abastecimento de Água , Bactérias/genética , Grécia , Humanos , Análise de Sequência de DNA
16.
Microorganisms ; 7(10)2019 Sep 21.
Artigo em Inglês | MEDLINE | ID: mdl-31546574

RESUMO

Since the introduction of the term holobiont [...].

17.
Genes (Basel) ; 10(7)2019 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-31247994

RESUMO

One of the most widely reared fish in the Mediterranean Sea is Sparus aurata. The succession of S. aurata whole-body microbiota in fertilized eggs, five, 15, 21 and 71 days post hatch (dph) larvae and the contribution of the rearing water and the provided feed (rotifers, Artemia sp. and commercial diet) to the host's microbiota was investigated by 454 pyrosequencing of the 16S rRNA gene diversity. In total, 1917 bacterial operational taxonomic units (OTUs) were found in all samples. On average, between 93 ± 2.1 and 366 ± 9.2 bacterial OTUs per sample were found, with most of them belonging to Proteobacteria and Bacteroidetes. Ten OTUs were shared between all S. aurata stages and were also detected in the rearing water or diet. The highest OTU richness occurred at the egg stage and the lowest at the yolk sac stage (5 dph). The rearing water and diet microbial communities contributed in S. aurata microbiota without overlaps in their microbial composition and structure. The commercial diet showed higher contribution to the S. aurata microbiota than the rearing water. After stage D71 the observed microbiota showed similarities with that of adult S. aurata as indicated by the increased number of OTUs associated with γ-Proteobacteria and Firmicutes.


Assuntos
Bactérias/classificação , Microbiota/genética , Dourada/microbiologia , Ração Animal , Animais , Artemia/genética , Bactérias/genética , Bactérias/isolamento & purificação , Bacteroidetes/genética , Dieta , Firmicutes/genética , Pesqueiros , Larva/microbiologia , Mar Mediterrâneo , Proteobactérias/genética , RNA Ribossômico 16S/genética , Rotíferos/genética , Dourada/embriologia , Dourada/crescimento & desenvolvimento , Alimentos Marinhos/microbiologia , Zigoto/microbiologia
19.
AIMS Microbiol ; 4(3): 397-412, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-31294223

RESUMO

Chitinolytic bacteria are widespread in marine and terrestrial environment, and this is rather a reflection of their principle growth substrate's ubiquity, chitin, in our planet. In this paper, we investigated the development of naturally occurring bacterial biofilms on the exoskeleton of the shrimp Melicertus kerathurus during its degradation in sea water. During a 12-day experiment with exoskeleton fragments in batch cultures containing only sea water as the growth medium at 18 °C in darkness, we analysed the formation and succession of biofilms by scanning electron microscopy and 16S rRNA gene diversity by next generation sequencing. Bacteria belonging to the γ- and α-Proteobacteria and Bacteroidetes showed marked (less or more than 10%) changes in their relative abundance from the beginning of the experiment. These bacterial taxa related to known chitinolytic bacteria were the Pseudolateromonas porphyrae, Halomonas aquamarina, Reinekea aestuarii, Colwellia asteriadis and Vibrio crassostreae. These bacteria could be considered as appropriate candidates for the degradation of chitinous crustacean waste from the seafood industry as they dominated in the biofilms developed on the shrimp's exoskeleton in natural sea water with no added substrates and the degradation of the shrimp exoskeleton was also evidenced.

20.
PeerJ ; 4: e1829, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27069786

RESUMO

Mussel biofiltration is a widely used approach for the mitigation of aquaculture water. In this study, we investigated the effect of mussel biofiltration on the communities of particle-associated bacteria and unicellular eukaryotes in a sea bass aquaculture in southern North Sea. We assessed the planktonic community changes before and after biofiltration based on the diversity of the 16S and 18S rRNA genes by using next generation sequencing technologies. Although there was no overall reduction in the operational taxonomic units (OTU) numbers between the control (no mussels) and the test (with mussels) tanks, a clear reduction in the relative abundance of the top three most dominant OTUs in every sampling time was observed, ranging between 2-28% and 16-82% for Bacteria and Eukarya, respectively. The bacterial community was dominated by OTUs related to phytoplankton blooms and/or high concentrations of detritus. Among the eukaryotes, several fungal and parasitic groups were found. Their relative abundance in most cases was also reduced from the control to the test tanks; a similar decreasing pattern was also observed for both major higher taxa and functional (trophic) groups. Overall, this study showed the effectiveness of mussel biofiltration on the decrease of microbiota abundance and diversity in seawater fueling fish farms.

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